Wall clock time and date at job start Thu Apr 9 2020 15:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35916 * 116.99733 * 2 1 4 4 C 1.38869 * 119.98035 * 0.02562 * 3 2 1 5 5 C 1.38268 * 120.24864 * 179.97438 * 4 3 2 6 6 C 1.37986 * 120.21355 * 0.02562 * 5 4 3 7 7 C 1.39639 * 119.95794 * 359.97438 * 6 5 4 8 8 C 1.47733 * 120.12126 * 179.97438 * 7 6 5 9 9 O 1.21596 * 120.00342 * 122.72696 * 8 7 6 10 10 N 1.34775 * 119.99820 * 302.72160 * 8 7 6 11 11 C 1.36875 * 120.00225 * 183.68738 * 10 8 7 12 12 H 1.07998 * 120.00510 * 138.81412 * 11 10 8 13 13 C 1.39052 * 119.99523 * 318.81516 * 11 10 8 14 14 N 1.31363 * 119.99848 * 158.76317 * 13 11 10 15 15 Si 1.86799 * 120.00315 * 338.75526 * 13 11 10 16 16 H 1.48503 * 109.46927 * 95.71537 * 15 13 11 17 17 H 1.48504 * 109.47258 * 215.71872 * 15 13 11 18 18 H 1.48505 * 109.46976 * 335.71911 * 15 13 11 19 19 C 1.46496 * 120.00160 * 3.68593 * 10 8 7 20 20 C 1.53003 * 109.47400 * 114.04995 * 19 10 8 21 21 C 1.53003 * 109.47532 * 234.05075 * 19 10 8 22 22 C 1.38434 * 119.98060 * 179.97438 * 3 2 1 23 23 C 1.50702 * 120.10452 * 0.28292 * 22 3 2 24 24 H 1.08996 * 109.47415 * 299.99383 * 1 2 3 25 25 H 1.09004 * 109.47144 * 59.99668 * 1 2 3 26 26 H 1.09006 * 109.47097 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.88005 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.88851 * 179.97438 * 5 4 3 29 29 H 1.07995 * 120.01784 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99960 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47165 * 354.05481 * 19 10 8 32 32 H 1.09004 * 109.46895 * 65.49710 * 20 19 10 33 33 H 1.08992 * 109.47617 * 185.49649 * 20 19 10 34 34 H 1.09003 * 109.47318 * 305.50389 * 20 19 10 35 35 H 1.08997 * 109.46719 * 62.98360 * 21 19 10 36 36 H 1.09000 * 109.46925 * 182.98644 * 21 19 10 37 37 H 1.08998 * 109.46738 * 302.98660 * 21 19 10 38 38 H 1.08999 * 109.46901 * 264.19351 * 23 22 3 39 39 H 1.09001 * 109.46929 * 24.18780 * 23 22 3 40 40 H 1.09003 * 109.47240 * 144.19051 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2892 2.3754 0.0005 5 6 1.9111 3.6103 0.0011 6 6 3.2884 3.6942 0.0005 7 6 4.0579 2.5290 0.0000 8 6 5.5328 2.6146 -0.0011 9 8 6.1735 2.0815 0.8843 10 7 6.1682 3.2835 -0.9836 11 6 7.5361 3.2993 -1.0270 12 1 8.0477 3.1967 -1.9726 13 6 8.2672 3.4475 0.1465 14 7 9.5206 3.0572 0.1932 15 14 7.4670 4.2018 1.6565 16 1 6.9645 3.1210 2.5424 17 1 8.4666 5.0189 2.3904 18 1 6.3338 5.0651 1.2371 19 6 5.3947 3.9935 -2.0052 20 6 5.6357 5.4987 -1.8729 21 6 5.8348 3.5268 -3.3943 22 6 3.4284 1.2831 0.0005 23 6 4.2512 0.0205 -0.0053 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2108 2.3162 0.0014 28 1 1.3169 4.5121 0.0011 29 1 3.7708 4.6604 0.0006 30 1 10.0305 3.1602 1.0119 31 1 4.3340 3.7823 -1.8701 32 1 6.6774 5.7215 -2.1041 33 1 4.9872 6.0329 -2.5672 34 1 5.4145 5.8139 -0.8532 35 1 5.6142 2.4654 -3.5076 36 1 5.2973 4.0930 -4.1550 37 1 6.9064 3.6896 -3.5096 38 1 4.5365 -0.2320 1.0159 39 1 3.6641 -0.7937 -0.4303 40 1 5.1479 0.1739 -0.6058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691144199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:38 Heat of formation + Delta-G solvation = -32.583488 kcal Electronic energy + Delta-G solvation = -22748.587980 eV Core-core repulsion = 19529.556712 eV Total energy + Delta-G solvation = -3219.031268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.32650 -39.01652 -36.83432 -35.59402 -32.58841 -32.31765 -30.57422 -30.05901 -27.56080 -26.62327 -26.58648 -25.01750 -22.64982 -21.41863 -20.75435 -19.34466 -18.15307 -16.54444 -16.13569 -15.78741 -15.66830 -15.47805 -15.09478 -14.22546 -13.94391 -13.39887 -13.33085 -13.18280 -13.06049 -12.78105 -12.42763 -12.29614 -12.22879 -11.88142 -11.80169 -11.61936 -11.40822 -11.07987 -11.03700 -10.80372 -10.75861 -10.66303 -10.13327 -10.02022 -9.82234 -8.66122 -8.47239 -8.33902 -7.92140 -7.60653 -6.18786 -3.90905 1.36082 1.62566 3.23883 3.35479 3.50614 3.70924 3.78084 4.09086 4.46334 4.63747 4.86759 4.98130 5.06303 5.09052 5.19209 5.30691 5.36198 5.44263 5.53754 5.56636 5.70813 5.87707 5.93597 5.99954 6.12711 6.13423 6.24171 6.35553 6.40923 6.46542 6.47908 6.59595 6.67765 6.78106 6.86411 6.90381 6.97219 7.49957 7.84786 8.00517 8.78483 8.91812 9.43820 9.83573 10.84980 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.006861 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.127086 B = 4080.279463 C = 4432.870111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.118 3.882 4 C -0.205 4.205 5 C -0.093 4.093 6 C -0.136 4.136 7 C -0.059 4.059 8 C 0.478 3.522 9 O -0.537 6.537 10 N -0.441 5.441 11 C -0.344 4.344 12 H 0.098 0.902 13 C 0.094 3.906 14 N -0.860 5.860 15 Si 0.914 3.086 16 H -0.254 1.254 17 H -0.312 1.312 18 H -0.282 1.282 19 C 0.115 3.885 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.077 4.077 23 C -0.102 4.102 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.272 0.728 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.591 0.120 -3.482 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.073 3.927 4 C -0.224 4.224 5 C -0.111 4.111 6 C -0.155 4.155 7 C -0.063 4.063 8 C 0.268 3.732 9 O -0.420 6.420 10 N -0.161 5.161 11 C -0.470 4.470 12 H 0.116 0.884 13 C -0.116 4.116 14 N -0.494 5.494 15 Si 0.746 3.254 16 H -0.180 1.180 17 H -0.242 1.242 18 H -0.208 1.208 19 C 0.011 3.989 20 C -0.212 4.212 21 C -0.210 4.210 22 C -0.078 4.078 23 C -0.158 4.158 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.976 -0.368 -2.997 17.242 hybrid contribution -0.658 0.718 0.746 1.227 sum -17.634 0.350 -2.251 17.781 Atomic orbital electron populations 1.23001 0.79001 1.03551 1.01102 1.86074 1.20761 1.26880 1.89045 1.18629 0.91456 0.84107 0.98497 1.21168 0.99504 0.92317 1.09417 1.20751 0.94181 0.96817 0.99350 1.21289 0.93664 0.97986 1.02533 1.20063 0.95148 0.92439 0.98651 1.18130 0.85737 0.82683 0.86617 1.90622 1.65778 1.49134 1.36485 1.43656 1.06384 1.42402 1.23693 1.18756 0.77989 1.53970 0.96270 0.88410 1.25329 0.94515 0.92994 0.98736 1.69747 1.10045 1.40747 1.28891 0.86328 0.77945 0.77676 0.83466 1.18001 1.24235 1.20770 1.21310 0.95782 0.92213 0.89626 1.22091 1.02789 0.95433 1.00934 1.22011 1.02805 1.00619 0.95521 1.19208 0.90235 0.95517 1.02862 1.20592 0.98854 0.93270 1.03123 0.92896 0.92876 0.88531 0.85744 0.85796 0.85559 0.91786 0.90301 0.91240 0.93004 0.93089 0.93050 0.93029 0.91250 0.90828 0.91828 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.45 9.44 -19.47 -0.18 -4.63 16 3 C 0.12 1.88 6.65 -39.28 -0.26 1.62 16 4 C -0.21 -2.80 9.03 -39.34 -0.36 -3.15 16 5 C -0.09 -1.30 10.03 -39.66 -0.40 -1.70 16 6 C -0.14 -2.36 7.49 -39.15 -0.29 -2.66 16 7 C -0.06 -1.22 4.73 -104.99 -0.50 -1.72 16 8 C 0.48 11.83 4.42 -12.38 -0.05 11.77 16 9 O -0.54 -15.32 11.45 5.28 0.06 -15.26 16 10 N -0.44 -10.62 2.11 -108.83 -0.23 -10.85 16 11 C -0.34 -9.52 8.69 -15.00 -0.13 -9.65 16 12 H 0.10 2.80 6.80 -52.49 -0.36 2.44 16 13 C 0.09 2.77 4.81 -17.45 -0.08 2.68 16 14 N -0.86 -26.19 13.95 55.50 0.77 -25.42 16 15 Si 0.91 24.87 24.78 -169.99 -4.21 20.66 16 16 H -0.25 -7.35 6.23 56.52 0.35 -7.00 16 17 H -0.31 -8.32 7.11 56.52 0.40 -7.92 16 18 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 19 C 0.11 2.19 2.54 -67.93 -0.17 2.02 16 20 C -0.15 -2.69 8.94 37.16 0.33 -2.36 16 21 C -0.15 -2.61 9.11 37.16 0.34 -2.27 16 22 C -0.08 -1.45 5.93 -104.04 -0.62 -2.07 16 23 C -0.10 -1.92 8.91 36.01 0.32 -1.60 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.12 1.29 6.28 -52.49 -0.33 0.96 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.13 2.17 6.68 -52.49 -0.35 1.82 16 30 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 31 H 0.08 1.40 4.78 -51.93 -0.25 1.15 16 32 H 0.07 1.29 7.95 -51.93 -0.41 0.88 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.93 7.43 -51.93 -0.39 0.54 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.29 6.72 -51.93 -0.35 0.95 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.06 1.04 7.36 -51.93 -0.38 0.65 16 40 H 0.07 1.52 7.25 -51.93 -0.38 1.14 16 LS Contribution 316.93 15.07 4.78 4.78 Total: -1.00 -33.47 316.93 -5.60 -39.07 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.71 Total: -0.52 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.88 Total: -7.82 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.54 Total: -36.27 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.12 Total: -19.89 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -4.21 Total: 20.66 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.47 -5.60 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691144199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.485 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds