Wall clock time and date at job start Thu Apr 9 2020 15:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35916 * 116.99733 * 2 1 4 4 C 1.38869 * 119.98035 * 0.02562 * 3 2 1 5 5 C 1.38268 * 120.24864 * 179.97438 * 4 3 2 6 6 C 1.37986 * 120.21355 * 0.02562 * 5 4 3 7 7 C 1.39639 * 119.95794 * 359.97438 * 6 5 4 8 8 C 1.47733 * 120.12126 * 179.97438 * 7 6 5 9 9 O 1.21596 * 120.00342 * 122.72696 * 8 7 6 10 10 N 1.34775 * 119.99820 * 302.72160 * 8 7 6 11 11 C 1.36875 * 120.00225 * 183.68738 * 10 8 7 12 12 H 1.07998 * 120.00510 * 138.81412 * 11 10 8 13 13 C 1.39052 * 119.99523 * 318.81516 * 11 10 8 14 14 N 1.31363 * 119.99848 * 158.76317 * 13 11 10 15 15 Si 1.86799 * 120.00315 * 338.75526 * 13 11 10 16 16 H 1.48503 * 109.46927 * 95.71537 * 15 13 11 17 17 H 1.48504 * 109.47258 * 215.71872 * 15 13 11 18 18 H 1.48505 * 109.46976 * 335.71911 * 15 13 11 19 19 C 1.46496 * 120.00160 * 3.68593 * 10 8 7 20 20 C 1.53003 * 109.47400 * 114.04995 * 19 10 8 21 21 C 1.53003 * 109.47532 * 234.05075 * 19 10 8 22 22 C 1.38434 * 119.98060 * 179.97438 * 3 2 1 23 23 C 1.50702 * 120.10452 * 0.28292 * 22 3 2 24 24 H 1.08996 * 109.47415 * 299.99383 * 1 2 3 25 25 H 1.09004 * 109.47144 * 59.99668 * 1 2 3 26 26 H 1.09006 * 109.47097 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.88005 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.88851 * 179.97438 * 5 4 3 29 29 H 1.07995 * 120.01784 * 179.97438 * 6 5 4 30 30 H 0.97000 * 119.99960 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47165 * 354.05481 * 19 10 8 32 32 H 1.09004 * 109.46895 * 65.49710 * 20 19 10 33 33 H 1.08992 * 109.47617 * 185.49649 * 20 19 10 34 34 H 1.09003 * 109.47318 * 305.50389 * 20 19 10 35 35 H 1.08997 * 109.46719 * 62.98360 * 21 19 10 36 36 H 1.09000 * 109.46925 * 182.98644 * 21 19 10 37 37 H 1.08998 * 109.46738 * 302.98660 * 21 19 10 38 38 H 1.08999 * 109.46901 * 264.19351 * 23 22 3 39 39 H 1.09001 * 109.46929 * 24.18780 * 23 22 3 40 40 H 1.09003 * 109.47240 * 144.19051 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2892 2.3754 0.0005 5 6 1.9111 3.6103 0.0011 6 6 3.2884 3.6942 0.0005 7 6 4.0579 2.5290 0.0000 8 6 5.5328 2.6146 -0.0011 9 8 6.1735 2.0815 0.8843 10 7 6.1682 3.2835 -0.9836 11 6 7.5361 3.2993 -1.0270 12 1 8.0477 3.1967 -1.9726 13 6 8.2672 3.4475 0.1465 14 7 9.5206 3.0572 0.1932 15 14 7.4670 4.2018 1.6565 16 1 6.9645 3.1210 2.5424 17 1 8.4666 5.0189 2.3904 18 1 6.3338 5.0651 1.2371 19 6 5.3947 3.9935 -2.0052 20 6 5.6357 5.4987 -1.8729 21 6 5.8348 3.5268 -3.3943 22 6 3.4284 1.2831 0.0005 23 6 4.2512 0.0205 -0.0053 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2108 2.3162 0.0014 28 1 1.3169 4.5121 0.0011 29 1 3.7708 4.6604 0.0006 30 1 10.0305 3.1602 1.0119 31 1 4.3340 3.7823 -1.8701 32 1 6.6774 5.7215 -2.1041 33 1 4.9872 6.0329 -2.5672 34 1 5.4145 5.8139 -0.8532 35 1 5.6142 2.4654 -3.5076 36 1 5.2973 4.0930 -4.1550 37 1 6.9064 3.6896 -3.5096 38 1 4.5365 -0.2320 1.0159 39 1 3.6641 -0.7937 -0.4303 40 1 5.1479 0.1739 -0.6058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691144199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:37 Heat of formation + Delta-G solvation = -54.972997 kcal Electronic energy + Delta-G solvation = -22749.558862 eV Core-core repulsion = 19529.556712 eV Total energy + Delta-G solvation = -3220.002150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.73892 -40.51162 -38.10116 -37.40323 -34.56229 -33.77225 -32.27519 -31.48160 -28.48372 -28.01218 -27.93300 -26.87470 -24.16547 -22.73650 -22.28734 -21.10402 -19.60797 -18.17481 -17.42135 -17.28256 -17.15244 -16.72719 -16.63868 -15.91620 -15.59748 -14.94948 -14.88529 -14.65792 -14.51352 -14.28975 -14.21519 -14.00409 -13.47481 -13.26007 -13.07690 -12.97385 -12.91579 -12.63204 -12.45159 -12.27599 -12.23000 -12.07898 -11.85307 -11.77472 -11.55147 -10.75420 -10.46560 -9.78600 -9.61355 -9.12407 -8.43243 -6.13007 0.04652 0.39310 1.18341 1.31381 1.49818 1.89387 2.30024 2.46058 2.65661 2.78695 3.09490 3.71824 3.78636 4.03101 4.03655 4.10112 4.25258 4.33904 4.46808 4.47495 4.48526 4.56990 4.65126 4.71254 4.76095 4.80651 4.86574 4.91839 5.02801 5.06233 5.16962 5.29487 5.35594 5.41773 5.46318 5.51050 5.69991 5.73157 5.90860 6.44914 6.74494 6.88001 7.32979 7.85459 8.64362 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.006861 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.127086 B = 4080.279463 C = 4432.870111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.123 3.877 4 C -0.186 4.186 5 C -0.073 4.073 6 C -0.145 4.145 7 C -0.090 4.090 8 C 0.479 3.521 9 O -0.587 6.587 10 N -0.453 5.453 11 C -0.334 4.334 12 H 0.078 0.922 13 C 0.050 3.950 14 N -0.905 5.905 15 Si 0.958 3.042 16 H -0.286 1.286 17 H -0.307 1.307 18 H -0.262 1.262 19 C 0.107 3.893 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.106 4.106 23 C -0.093 4.093 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.170 0.830 28 H 0.171 0.829 29 H 0.127 0.873 30 H 0.272 0.728 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.889 1.547 -4.406 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.078 3.922 4 C -0.204 4.204 5 C -0.091 4.091 6 C -0.164 4.164 7 C -0.093 4.093 8 C 0.270 3.730 9 O -0.473 6.473 10 N -0.174 5.174 11 C -0.461 4.461 12 H 0.096 0.904 13 C -0.155 4.155 14 N -0.542 5.542 15 Si 0.790 3.210 16 H -0.214 1.214 17 H -0.237 1.237 18 H -0.187 1.187 19 C 0.005 3.995 20 C -0.207 4.207 21 C -0.204 4.204 22 C -0.107 4.107 23 C -0.149 4.149 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.135 0.865 27 H 0.188 0.812 28 H 0.188 0.812 29 H 0.145 0.855 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -22.312 1.091 -3.961 22.687 hybrid contribution 0.713 0.129 0.958 1.201 sum -21.599 1.220 -3.003 21.841 Atomic orbital electron populations 1.23415 0.76019 1.05690 1.02678 1.86061 1.23761 1.26183 1.88611 1.18632 0.90386 0.85829 0.97398 1.21684 1.01593 0.90973 1.06149 1.21218 0.92690 0.98835 0.96308 1.21373 0.95250 0.96575 1.03173 1.19732 0.92292 0.94607 1.02688 1.18923 0.87965 0.80866 0.85203 1.90569 1.67651 1.50665 1.38458 1.43879 1.05406 1.43317 1.24760 1.18648 0.80010 1.52421 0.95033 0.90429 1.25881 0.94874 0.93991 1.00760 1.69821 1.11256 1.43710 1.29425 0.85595 0.77842 0.76456 0.81118 1.21416 1.23690 1.18691 1.21663 0.96223 0.92896 0.88736 1.22065 1.02647 0.94380 1.01604 1.21975 1.01848 1.00777 0.95786 1.19225 0.92096 0.94428 1.04977 1.20435 0.98054 0.94934 1.01497 0.91383 0.90955 0.86487 0.81247 0.81174 0.85538 0.91901 0.88153 0.93237 0.88323 0.94085 0.93963 0.88687 0.93577 0.92621 0.89655 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.25 9.44 -92.60 -0.87 -9.12 16 3 C 0.12 3.51 6.65 22.47 0.15 3.66 16 4 C -0.19 -3.95 9.03 22.43 0.20 -3.74 16 5 C -0.07 -1.61 10.03 22.22 0.22 -1.39 16 6 C -0.14 -4.58 7.49 22.55 0.17 -4.41 16 7 C -0.09 -3.63 4.73 -20.10 -0.10 -3.73 16 8 C 0.48 24.36 4.42 86.75 0.38 24.74 16 9 O -0.59 -35.30 11.45 -4.02 -0.05 -35.34 16 10 N -0.45 -22.32 2.11 -616.49 -1.30 -23.62 16 11 C -0.33 -19.33 8.69 84.10 0.73 -18.60 16 12 H 0.08 4.71 6.80 -2.91 -0.02 4.69 16 13 C 0.05 3.06 4.81 84.96 0.41 3.47 16 14 N -0.90 -58.18 13.95 21.68 0.30 -57.88 16 15 Si 0.96 53.40 24.78 68.60 1.70 55.10 16 16 H -0.29 -17.35 6.23 99.48 0.62 -16.73 16 17 H -0.31 -16.49 7.11 99.48 0.71 -15.78 16 18 H -0.26 -13.46 7.11 99.48 0.71 -12.76 16 19 C 0.11 3.96 2.54 44.99 0.11 4.07 16 20 C -0.15 -4.87 8.94 71.98 0.64 -4.23 16 21 C -0.15 -4.87 9.11 71.98 0.66 -4.22 16 22 C -0.11 -3.93 5.93 -19.49 -0.12 -4.05 16 23 C -0.09 -3.62 8.91 71.24 0.63 -2.98 16 24 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 25 H 0.07 0.70 7.66 -2.38 -0.02 0.68 16 26 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.17 2.13 6.28 -2.91 -0.02 2.11 16 28 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.13 3.95 6.68 -2.91 -0.02 3.93 16 30 H 0.27 16.60 8.31 -92.71 -0.77 15.83 16 31 H 0.10 3.30 4.78 -2.39 -0.01 3.28 16 32 H 0.05 1.80 7.95 -2.38 -0.02 1.78 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.04 1.40 7.43 -2.39 -0.02 1.39 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 37 H 0.05 1.74 6.72 -2.39 -0.02 1.72 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.08 2.82 7.36 -2.39 -0.02 2.80 16 40 H 0.04 1.75 7.25 -2.39 -0.02 1.73 16 Total: -1.00 -79.95 316.93 5.95 -74.00 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 0.95 Total: 6.95 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.22 Total: -10.09 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.00 Total: -81.50 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.92 Total: -44.46 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 1.70 Total: 55.10 kcal Total: -79.95 5.95 -74.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691144199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.030 kcal (2) G-P(sol) polarization free energy of solvation -79.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds