Wall clock time and date at job start Thu Apr 9 2020 15:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99704 * 2 1 4 4 O 1.20819 * 120.00146 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99877 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46856 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47258 * 60.00263 * 6 5 3 8 8 C 1.53002 * 109.47330 * 299.99929 * 6 5 3 9 9 N 1.46507 * 109.46565 * 180.02562 * 6 5 3 10 10 C 1.39685 * 119.99375 * 185.47297 * 9 6 5 11 11 C 1.39332 * 119.95817 * 351.44630 * 10 9 6 12 12 C 1.38472 * 120.42640 * 180.02562 * 11 10 9 13 13 C 1.37685 * 120.33004 * 359.97438 * 12 11 10 14 14 C 1.40755 * 119.89026 * 0.04114 * 13 12 11 15 15 C 1.41406 * 120.20773 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99850 * 24.92308 * 15 14 13 17 17 C 1.39925 * 119.99858 * 204.91356 * 15 14 13 18 18 N 1.30828 * 120.00247 * 19.68684 * 17 15 14 19 19 Si 1.86803 * 120.00078 * 199.68152 * 17 15 14 20 20 H 1.48500 * 109.47130 * 90.00489 * 19 17 15 21 21 H 1.48494 * 109.47171 * 210.00334 * 19 17 15 22 22 H 1.48503 * 109.47029 * 330.00362 * 19 17 15 23 23 C 1.38288 * 119.94756 * 171.47236 * 10 9 6 24 24 H 1.08998 * 109.46980 * 299.99529 * 1 2 3 25 25 H 1.09003 * 109.47085 * 59.99953 * 1 2 3 26 26 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46862 * 60.00299 * 5 3 2 28 28 H 1.08994 * 109.47257 * 300.00175 * 5 3 2 29 29 H 1.08999 * 109.46868 * 172.08185 * 7 6 5 30 30 H 1.09002 * 109.47090 * 292.08562 * 7 6 5 31 31 H 1.08996 * 109.47175 * 52.08490 * 7 6 5 32 32 H 1.09003 * 109.47040 * 314.87048 * 8 6 5 33 33 H 1.08997 * 109.46998 * 74.87023 * 8 6 5 34 34 H 1.09001 * 109.46921 * 194.87387 * 8 6 5 35 35 H 0.96998 * 119.99990 * 5.47373 * 9 6 5 36 36 H 1.08001 * 119.78037 * 0.02562 * 11 10 9 37 37 H 1.08005 * 119.83310 * 180.02562 * 12 11 10 38 38 H 1.07993 * 120.05882 * 180.02562 * 13 12 11 39 39 H 0.96999 * 120.00746 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.16350 * 359.69501 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7422 0.0011 7 6 3.4526 3.4354 1.2503 8 6 3.4534 3.4360 -1.2482 9 7 5.4631 2.8188 0.0011 10 6 6.0975 4.0579 0.1169 11 6 5.3490 5.2314 0.0530 12 6 5.9679 6.4649 0.1661 13 6 7.3309 6.5453 0.3437 14 6 8.1002 5.3685 0.4098 15 6 9.5006 5.4432 0.5914 16 1 9.9378 6.3076 1.0689 17 6 10.3198 4.3971 0.1527 18 7 9.8785 3.5524 -0.7437 19 14 12.0436 4.2065 0.8467 20 1 11.9996 3.3365 2.0494 21 1 12.9244 3.5905 -0.1779 22 1 12.5771 5.5411 1.2204 23 6 7.4676 4.1181 0.2942 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9564 0.7807 -0.8892 28 1 3.9558 0.7810 0.8908 29 1 3.8749 4.4375 1.3243 30 1 2.3668 3.5028 1.1820 31 1 3.7260 2.8598 2.1346 32 1 3.6191 2.8009 -2.1184 33 1 2.3851 3.6144 -1.1266 34 1 3.9669 4.3871 -1.3895 35 1 5.9912 2.0092 -0.0794 36 1 4.2792 5.1785 -0.0856 37 1 5.3784 7.3685 0.1157 38 1 7.8090 7.5096 0.4318 39 1 10.4464 2.8274 -1.0481 40 1 8.0482 3.2092 0.3484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694012069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:43 Heat of formation + Delta-G solvation = -52.749858 kcal Electronic energy + Delta-G solvation = -21624.487461 eV Core-core repulsion = 18404.581714 eV Total energy + Delta-G solvation = -3219.905747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80054 -38.63201 -36.93566 -35.82198 -33.47328 -31.73258 -29.80230 -28.99682 -27.43437 -26.89999 -26.82732 -25.01257 -21.82235 -20.94011 -20.31084 -19.11598 -17.77120 -16.97188 -16.64744 -16.52053 -15.91334 -14.93358 -14.66874 -14.50033 -14.31641 -13.60778 -13.50222 -13.15006 -12.74341 -12.40061 -12.24188 -12.20936 -12.16815 -11.77216 -11.52426 -11.41073 -11.22284 -11.05781 -10.91638 -10.70957 -10.66784 -10.42488 -10.25596 -10.08118 -9.51729 -9.22231 -9.14360 -8.72066 -7.24882 -6.71831 -6.13030 -4.26383 2.12576 2.54078 2.89495 3.11946 3.15667 3.26909 3.37135 4.00388 4.27586 4.64060 4.73950 4.89441 4.94187 4.95459 5.02077 5.28918 5.38463 5.60800 5.73470 5.87765 6.06923 6.18521 6.22335 6.31393 6.35246 6.47097 6.64183 6.78413 6.83078 6.94509 7.16509 7.18642 7.40396 7.47567 7.68696 7.86011 8.00764 8.15314 8.20813 8.53010 8.74126 8.87394 9.04809 9.16121 10.28271 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029346 B = 0.004002 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.917180 B = 6995.339631 C = 7664.401099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.493 6.493 5 C -0.117 4.117 6 C 0.204 3.796 7 C -0.185 4.185 8 C -0.184 4.184 9 N -0.754 5.754 10 C 0.222 3.778 11 C -0.307 4.307 12 C -0.069 4.069 13 C -0.258 4.258 14 C 0.140 3.860 15 C -0.467 4.467 16 H 0.076 0.924 17 C 0.080 3.920 18 N -0.791 5.791 19 Si 0.902 3.098 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.263 1.263 23 C -0.230 4.230 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.388 0.612 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.277 0.723 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.739 -8.450 0.771 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.310 3.690 4 O -0.380 6.380 5 C -0.155 4.155 6 C 0.116 3.884 7 C -0.243 4.243 8 C -0.242 4.242 9 N -0.388 5.388 10 C 0.124 3.876 11 C -0.329 4.329 12 C -0.088 4.088 13 C -0.278 4.278 14 C 0.137 3.863 15 C -0.497 4.497 16 H 0.094 0.906 17 C -0.138 4.138 18 N -0.417 5.417 19 Si 0.727 3.273 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.254 4.254 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.221 0.779 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.077 -8.285 0.627 15.493 hybrid contribution 0.880 -0.540 0.141 1.043 sum -12.197 -8.825 0.769 15.074 Atomic orbital electron populations 1.23237 0.76509 1.03489 1.02570 1.86513 1.23330 1.33761 1.84399 1.23521 0.91963 0.81179 0.72330 1.90603 1.67228 1.35711 1.44456 1.21652 0.87781 1.00058 1.06002 1.19589 0.82179 0.90571 0.96061 1.22722 1.02014 1.03555 0.96013 1.22746 1.02213 1.02887 0.96324 1.44475 1.02639 1.06597 1.85052 1.17511 0.91653 0.83937 0.94502 1.20374 0.98073 0.91549 1.22939 1.20340 0.94463 0.95302 0.98670 1.20863 0.93538 0.96960 1.16459 1.17305 0.92701 0.90290 0.86039 1.19542 0.91595 1.03558 1.35014 0.90620 1.25851 1.00388 0.94684 0.92844 1.69875 1.37883 1.12970 1.20951 0.86417 0.81805 0.79525 0.79534 1.19422 1.20511 1.18718 1.20667 0.90581 0.98565 1.15563 0.91907 0.91902 0.88299 0.87427 0.87393 0.89313 0.90713 0.93647 0.93779 0.90830 0.89580 0.77850 0.87446 0.89718 0.89531 0.91236 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.00 10.57 -39.25 -0.41 -4.41 16 3 C 0.47 5.89 7.40 36.01 0.27 6.15 16 4 O -0.49 -7.19 11.28 -18.74 -0.21 -7.41 16 5 C -0.12 -1.43 4.94 -27.88 -0.14 -1.56 16 6 C 0.20 3.18 0.80 -131.82 -0.11 3.07 16 7 C -0.19 -3.01 7.78 37.16 0.29 -2.72 16 8 C -0.18 -2.96 7.72 37.16 0.29 -2.68 16 9 N -0.75 -13.85 5.24 -46.03 -0.24 -14.09 16 10 C 0.22 5.05 6.17 -83.85 -0.52 4.53 16 11 C -0.31 -6.83 6.49 -39.09 -0.25 -7.09 16 12 C -0.07 -1.59 10.01 -39.70 -0.40 -1.99 16 13 C -0.26 -6.53 9.79 -38.83 -0.38 -6.91 16 14 C 0.14 3.79 5.56 -106.85 -0.59 3.20 16 15 C -0.47 -12.65 9.04 -37.75 -0.34 -12.99 16 16 H 0.08 1.99 7.92 -52.49 -0.42 1.57 16 17 C 0.08 2.03 5.09 -17.35 -0.09 1.94 16 18 N -0.79 -20.57 11.11 55.55 0.62 -19.95 16 19 Si 0.90 18.93 29.60 -169.99 -5.03 13.90 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.23 -5.93 8.53 -38.67 -0.33 -6.26 16 24 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.63 4.70 -51.93 -0.24 1.38 16 30 H 0.07 1.18 5.66 -51.93 -0.29 0.88 16 31 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 33 H 0.07 1.16 5.89 -51.93 -0.31 0.86 16 34 H 0.09 1.58 4.88 -51.93 -0.25 1.33 16 35 H 0.39 6.65 8.50 -40.82 -0.35 6.31 16 36 H 0.11 2.18 3.76 -52.49 -0.20 1.98 16 37 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 40 H 0.11 2.99 6.28 -52.49 -0.33 2.66 16 LS Contribution 317.89 15.07 4.79 4.79 Total: -1.00 -29.25 317.89 -7.05 -36.30 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -5.32 Total: 12.82 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -1.24 Total: -21.95 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.38 Total: -34.04 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.63 Total: -11.82 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.25 -7.05 -36.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694012069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.448 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds