Wall clock time and date at job start Thu Apr 9 2020 15:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99704 * 2 1 4 4 O 1.20819 * 120.00146 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99877 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46856 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47258 * 60.00263 * 6 5 3 8 8 C 1.53002 * 109.47330 * 299.99929 * 6 5 3 9 9 N 1.46507 * 109.46565 * 180.02562 * 6 5 3 10 10 C 1.39685 * 119.99375 * 185.47297 * 9 6 5 11 11 C 1.39332 * 119.95817 * 351.44630 * 10 9 6 12 12 C 1.38472 * 120.42640 * 180.02562 * 11 10 9 13 13 C 1.37685 * 120.33004 * 359.97438 * 12 11 10 14 14 C 1.40755 * 119.89026 * 0.04114 * 13 12 11 15 15 C 1.41406 * 120.20773 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99850 * 24.92308 * 15 14 13 17 17 C 1.39925 * 119.99858 * 204.91356 * 15 14 13 18 18 N 1.30828 * 120.00247 * 19.68684 * 17 15 14 19 19 Si 1.86803 * 120.00078 * 199.68152 * 17 15 14 20 20 H 1.48500 * 109.47130 * 90.00489 * 19 17 15 21 21 H 1.48494 * 109.47171 * 210.00334 * 19 17 15 22 22 H 1.48503 * 109.47029 * 330.00362 * 19 17 15 23 23 C 1.38288 * 119.94756 * 171.47236 * 10 9 6 24 24 H 1.08998 * 109.46980 * 299.99529 * 1 2 3 25 25 H 1.09003 * 109.47085 * 59.99953 * 1 2 3 26 26 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46862 * 60.00299 * 5 3 2 28 28 H 1.08994 * 109.47257 * 300.00175 * 5 3 2 29 29 H 1.08999 * 109.46868 * 172.08185 * 7 6 5 30 30 H 1.09002 * 109.47090 * 292.08562 * 7 6 5 31 31 H 1.08996 * 109.47175 * 52.08490 * 7 6 5 32 32 H 1.09003 * 109.47040 * 314.87048 * 8 6 5 33 33 H 1.08997 * 109.46998 * 74.87023 * 8 6 5 34 34 H 1.09001 * 109.46921 * 194.87387 * 8 6 5 35 35 H 0.96998 * 119.99990 * 5.47373 * 9 6 5 36 36 H 1.08001 * 119.78037 * 0.02562 * 11 10 9 37 37 H 1.08005 * 119.83310 * 180.02562 * 12 11 10 38 38 H 1.07993 * 120.05882 * 180.02562 * 13 12 11 39 39 H 0.96999 * 120.00746 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.16350 * 359.69501 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7422 0.0011 7 6 3.4526 3.4354 1.2503 8 6 3.4534 3.4360 -1.2482 9 7 5.4631 2.8188 0.0011 10 6 6.0975 4.0579 0.1169 11 6 5.3490 5.2314 0.0530 12 6 5.9679 6.4649 0.1661 13 6 7.3309 6.5453 0.3437 14 6 8.1002 5.3685 0.4098 15 6 9.5006 5.4432 0.5914 16 1 9.9378 6.3076 1.0689 17 6 10.3198 4.3971 0.1527 18 7 9.8785 3.5524 -0.7437 19 14 12.0436 4.2065 0.8467 20 1 11.9996 3.3365 2.0494 21 1 12.9244 3.5905 -0.1779 22 1 12.5771 5.5411 1.2204 23 6 7.4676 4.1181 0.2942 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9564 0.7807 -0.8892 28 1 3.9558 0.7810 0.8908 29 1 3.8749 4.4375 1.3243 30 1 2.3668 3.5028 1.1820 31 1 3.7260 2.8598 2.1346 32 1 3.6191 2.8009 -2.1184 33 1 2.3851 3.6144 -1.1266 34 1 3.9669 4.3871 -1.3895 35 1 5.9912 2.0092 -0.0794 36 1 4.2792 5.1785 -0.0856 37 1 5.3784 7.3685 0.1157 38 1 7.8090 7.5096 0.4318 39 1 10.4464 2.8274 -1.0481 40 1 8.0482 3.2092 0.3484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694012069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:42 Heat of formation + Delta-G solvation = -69.112673 kcal Electronic energy + Delta-G solvation = -21625.197006 eV Core-core repulsion = 18404.581714 eV Total energy + Delta-G solvation = -3220.615292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80771 -40.13472 -38.26188 -37.11824 -35.32067 -33.27719 -31.52722 -30.20713 -29.01625 -28.15074 -27.91279 -26.86305 -23.08071 -22.74427 -21.79374 -20.57004 -19.00822 -18.53623 -17.82264 -17.53577 -17.28479 -16.65314 -16.37196 -15.97995 -15.36501 -14.95096 -14.72046 -14.54095 -14.11605 -14.06353 -13.97059 -13.71924 -13.21554 -13.02393 -12.95062 -12.77918 -12.68079 -12.56918 -12.36396 -12.23814 -12.05295 -11.79143 -11.65346 -11.43339 -11.30497 -11.01612 -10.85184 -10.46100 -9.18445 -8.61064 -7.87347 -6.27135 1.11392 1.17427 1.36780 1.40273 1.52588 1.60711 1.65435 2.25223 2.82748 2.89735 3.52736 3.85244 3.94852 3.98654 4.23929 4.33243 4.36593 4.52794 4.55763 4.60776 4.73245 4.76360 4.86263 4.91426 4.98545 5.05904 5.07215 5.22728 5.32117 5.36425 5.44571 5.50621 5.54944 5.67128 6.01133 6.15520 6.24487 6.30070 6.61291 6.75825 6.98153 7.08471 7.11011 7.30818 8.40789 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029346 B = 0.004002 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.917180 B = 6995.339631 C = 7664.401099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.472 3.528 4 O -0.518 6.518 5 C -0.113 4.113 6 C 0.200 3.800 7 C -0.180 4.180 8 C -0.178 4.178 9 N -0.745 5.745 10 C 0.230 3.770 11 C -0.303 4.303 12 C -0.069 4.069 13 C -0.286 4.286 14 C 0.109 3.891 15 C -0.507 4.507 16 H 0.068 0.932 17 C 0.041 3.959 18 N -0.819 5.819 19 Si 0.977 3.023 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.262 1.262 23 C -0.255 4.255 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.285 0.715 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 -10.173 0.817 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.316 3.684 4 O -0.407 6.407 5 C -0.150 4.150 6 C 0.114 3.886 7 C -0.237 4.237 8 C -0.236 4.236 9 N -0.377 5.377 10 C 0.129 3.871 11 C -0.325 4.325 12 C -0.088 4.088 13 C -0.307 4.307 14 C 0.106 3.894 15 C -0.537 4.537 16 H 0.086 0.914 17 C -0.174 4.174 18 N -0.445 5.445 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.279 4.279 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.229 0.771 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.137 -10.045 0.666 17.355 hybrid contribution 0.989 -0.048 0.092 0.994 sum -13.148 -10.093 0.758 16.593 Atomic orbital electron populations 1.23540 0.74721 1.05602 1.02590 1.86496 1.25032 1.32633 1.83872 1.23451 0.91939 0.81320 0.71693 1.90595 1.67725 1.36554 1.45810 1.21554 0.88038 0.97499 1.07929 1.19722 0.80148 0.93173 0.95599 1.22642 1.02305 1.02255 0.96527 1.22658 1.02190 1.01827 0.96902 1.44515 1.04062 1.05376 1.83775 1.17558 0.90899 0.85857 0.92755 1.20700 0.99184 0.91114 1.21488 1.20687 0.93888 0.96937 0.97297 1.21000 0.94723 0.96586 1.18401 1.17683 0.93395 0.91458 0.86841 1.19761 0.92373 1.04689 1.36893 0.91359 1.26646 1.04437 0.93811 0.92552 1.69915 1.39666 1.13439 1.21481 0.85293 0.76505 0.79434 0.78944 1.18755 1.19215 1.18643 1.20603 0.91884 0.97608 1.17798 0.91925 0.91906 0.85214 0.85490 0.85593 0.91634 0.90012 0.93129 0.92847 0.90286 0.91961 0.77060 0.85204 0.86882 0.89639 0.90414 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.95 10.57 -51.40 -0.54 -7.49 16 3 C 0.47 10.63 7.40 71.24 0.53 11.16 16 4 O -0.52 -13.97 11.28 21.98 0.25 -13.72 16 5 C -0.11 -2.42 4.94 29.85 0.15 -2.27 16 6 C 0.20 5.85 0.80 3.60 0.00 5.86 16 7 C -0.18 -5.52 7.78 71.98 0.56 -4.96 16 8 C -0.18 -5.41 7.72 71.98 0.56 -4.86 16 9 N -0.74 -26.49 5.24 -299.55 -1.57 -28.06 16 10 C 0.23 10.45 6.17 38.17 0.24 10.69 16 11 C -0.30 -13.33 6.49 22.59 0.15 -13.19 16 12 C -0.07 -3.20 10.01 22.19 0.22 -2.98 16 13 C -0.29 -14.97 9.79 22.75 0.22 -14.75 16 14 C 0.11 6.15 5.56 -21.31 -0.12 6.03 16 15 C -0.51 -28.56 9.04 23.46 0.21 -28.35 16 16 H 0.07 3.77 7.92 -2.91 -0.02 3.75 16 17 C 0.04 2.11 5.09 85.25 0.43 2.54 16 18 N -0.82 -43.34 11.11 21.82 0.24 -43.10 16 19 Si 0.98 39.23 29.60 68.60 2.03 41.26 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 C -0.25 -13.49 8.53 22.86 0.20 -13.30 16 24 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 25 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 26 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.32 4.70 -2.39 -0.01 2.31 16 30 H 0.08 2.43 5.66 -2.39 -0.01 2.41 16 31 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 32 H 0.05 1.50 8.06 -2.39 -0.02 1.48 16 33 H 0.08 2.34 5.89 -2.39 -0.01 2.33 16 34 H 0.06 2.19 4.88 -2.39 -0.01 2.18 16 35 H 0.39 13.03 8.50 -92.71 -0.79 12.25 16 36 H 0.13 5.12 3.76 -2.91 -0.01 5.10 16 37 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 38 H 0.09 4.32 8.06 -2.91 -0.02 4.29 16 39 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 40 H 0.10 5.38 6.28 -2.91 -0.02 5.36 16 Total: -1.00 -64.46 317.89 5.23 -59.23 By element: Atomic # 1 Polarization: 38.40 SS G_CDS: 0.28 Total: 38.68 kcal Atomic # 6 Polarization: -51.34 SS G_CDS: 4.54 Total: -46.80 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.33 Total: -71.16 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.29 Total: -21.22 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -64.46 5.23 -59.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694012069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.883 kcal (2) G-P(sol) polarization free energy of solvation -64.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds