Wall clock time and date at job start Thu Apr 9 2020 15:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46845 * 2 1 4 4 C 1.52993 * 109.47464 * 239.99714 * 2 1 3 5 5 C 1.50700 * 109.47158 * 59.84917 * 4 2 1 6 6 O 1.20825 * 120.00095 * 0.02562 * 5 4 2 7 7 O 1.34228 * 120.00014 * 179.97438 * 5 4 2 8 8 N 1.46500 * 109.46758 * 119.99602 * 2 1 3 9 9 C 1.46498 * 119.99791 * 125.59939 * 8 2 1 10 10 C 1.50706 * 109.47239 * 269.99997 * 9 8 2 11 11 H 1.08004 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00243 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00163 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47283 * 89.99435 * 14 12 10 16 16 H 1.48499 * 109.47334 * 210.00002 * 14 12 10 17 17 H 1.48501 * 109.47175 * 329.99769 * 14 12 10 18 18 C 1.39671 * 120.00467 * 305.60021 * 8 2 1 19 19 C 1.38910 * 120.07969 * 173.62009 * 18 8 2 20 20 C 1.38108 * 119.92795 * 179.97438 * 19 18 8 21 21 C 1.38283 * 120.07115 * 359.97438 * 20 19 18 22 22 C 1.38288 * 120.15158 * 0.02562 * 21 20 19 23 23 C 1.38102 * 120.07726 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47703 * 304.64792 * 1 2 3 25 25 H 1.09001 * 109.46981 * 64.64576 * 1 2 3 26 26 H 1.08996 * 109.47400 * 184.64302 * 1 2 3 27 27 H 1.09003 * 109.46537 * 176.97671 * 3 2 1 28 28 H 1.08998 * 109.47309 * 296.97198 * 3 2 1 29 29 H 1.08999 * 109.47430 * 56.98659 * 3 2 1 30 30 H 1.08997 * 109.47613 * 179.85602 * 4 2 1 31 31 H 1.09000 * 109.47138 * 299.85155 * 4 2 1 32 32 H 0.96705 * 116.99828 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.47482 * 29.99630 * 9 8 2 34 34 H 1.08996 * 109.47334 * 150.00338 * 9 8 2 35 35 H 0.96997 * 119.99824 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.03611 * 359.70002 * 19 18 8 37 37 H 1.07992 * 119.96105 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.92178 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.96199 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.03651 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5347 -0.0131 -2.4796 6 8 0.8384 0.9681 -2.3689 7 8 1.8590 -0.4718 -3.6987 8 7 2.0182 -0.6905 1.1962 9 6 2.9587 -1.8062 1.0654 10 6 2.1919 -3.0976 0.9405 11 1 1.1120 -3.0882 0.9574 12 6 2.8689 -4.2911 0.8058 13 7 4.1839 -4.3025 0.7857 14 14 1.9185 -5.8916 0.6502 15 1 1.6476 -6.1693 -0.7833 16 1 2.7197 -7.0012 1.2266 17 1 0.6324 -5.7769 1.3837 18 6 1.5872 -0.2853 2.4615 19 6 1.9425 -1.0191 3.5861 20 6 1.5150 -0.6153 4.8357 21 6 0.7344 0.5184 4.9681 22 6 0.3788 1.2513 3.8506 23 6 0.8029 0.8531 2.5981 24 1 -0.3634 0.5842 0.8454 25 1 -0.3633 0.4401 -0.9287 26 1 -0.3634 -1.0242 0.0832 27 1 3.1286 1.4429 0.0542 28 1 1.7216 1.9404 -0.9159 29 1 1.6331 1.9717 0.8617 30 1 3.1300 -0.7190 -1.2504 31 1 1.6789 -1.7497 -1.2478 32 1 1.5115 0.0159 -4.4580 33 1 3.5731 -1.6612 0.1769 34 1 3.5984 -1.8474 1.9469 35 1 4.6601 -5.1422 0.6906 36 1 2.5488 -1.9070 3.4830 37 1 1.7906 -1.1856 5.7104 38 1 0.4011 0.8318 5.9464 39 1 -0.2313 2.1360 3.9575 40 1 0.5245 1.4257 1.7257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694047883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:46 Heat of formation + Delta-G solvation = -40.942129 kcal Electronic energy + Delta-G solvation = -22567.114943 eV Core-core repulsion = 19347.721218 eV Total energy + Delta-G solvation = -3219.393726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54752 -39.13954 -36.91589 -35.81468 -33.40098 -32.08562 -30.57685 -29.16459 -27.92706 -26.87241 -26.28340 -22.92619 -22.30763 -21.67243 -20.69880 -18.58782 -17.99839 -16.59401 -16.38194 -16.27912 -15.76083 -15.02148 -15.00375 -14.27842 -13.91902 -13.89236 -13.31657 -13.12666 -12.79897 -12.64592 -12.29741 -12.15663 -11.99517 -11.84968 -11.39342 -11.15322 -11.11306 -11.01994 -10.84650 -10.72997 -10.56949 -10.47707 -10.09767 -9.94578 -9.71384 -9.58063 -8.85895 -8.54181 -8.20798 -6.50095 -6.05597 -4.21966 2.13023 2.34283 2.38887 3.15313 3.22818 3.30870 3.35113 4.12265 4.37104 4.60986 4.96046 5.15990 5.35259 5.40663 5.54308 5.60379 5.65505 5.79281 5.92729 6.04867 6.12453 6.12465 6.21374 6.28739 6.33826 6.35038 6.48698 6.62580 6.68942 6.75247 6.86099 6.98321 7.12404 7.22293 7.25361 7.36034 7.64247 7.77575 8.07336 8.11294 8.27947 8.48919 8.88477 9.45425 10.90550 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010333 B = 0.009621 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.055681 B = 2909.586367 C = 5075.907158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.203 3.797 3 C -0.185 4.185 4 C -0.115 4.115 5 C 0.485 3.515 6 O -0.515 6.515 7 O -0.515 6.515 8 N -0.606 5.606 9 C 0.243 3.757 10 C -0.531 4.531 11 H 0.060 0.940 12 C 0.064 3.936 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.244 3.756 19 C -0.185 4.185 20 C -0.080 4.080 21 C -0.203 4.203 22 C -0.084 4.084 23 C -0.229 4.229 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.404 0.596 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.258 8.854 -2.358 10.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.117 3.883 3 C -0.243 4.243 4 C -0.152 4.152 5 C 0.329 3.671 6 O -0.405 6.405 7 O -0.326 6.326 8 N -0.312 5.312 9 C 0.124 3.876 10 C -0.570 4.570 11 H 0.078 0.922 12 C -0.138 4.138 13 N -0.530 5.530 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C 0.138 3.862 19 C -0.208 4.208 20 C -0.099 4.099 21 C -0.223 4.223 22 C -0.103 4.103 23 C -0.251 4.251 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.262 0.738 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.030 8.682 -2.215 9.824 hybrid contribution -0.632 -0.844 -0.548 1.188 sum -4.662 7.838 -2.762 9.529 Atomic orbital electron populations 1.22747 0.94991 1.02837 1.03753 1.19660 0.93783 0.90917 0.83975 1.22760 1.01082 0.96637 1.03774 1.21699 1.03853 1.02250 0.87432 1.23633 0.76630 0.82092 0.84751 1.90581 1.36382 1.26652 1.86871 1.84613 1.72157 1.59023 1.16836 1.47182 1.48148 1.35224 1.00681 1.19364 0.87695 0.82542 0.98021 1.21574 0.93627 0.91217 1.50573 0.92158 1.24943 0.94807 0.99051 0.95041 1.69921 1.06280 1.27143 1.49685 0.86595 0.80064 0.83132 0.78310 1.20609 1.21144 1.19814 1.17782 0.91384 0.91407 0.85622 1.20938 1.06338 1.02280 0.91230 1.20812 0.96673 0.95892 0.96510 1.20662 1.05232 0.98748 0.97693 1.20719 0.98594 0.98494 0.92480 1.21207 1.06394 0.99526 0.98021 0.90934 0.90347 0.92408 0.92973 0.90168 0.91176 0.86902 0.85194 0.73849 0.94745 0.94718 0.92621 0.84967 0.87234 0.87804 0.87517 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 7.93 37.16 0.29 -2.86 16 2 C 0.20 3.54 0.78 -131.82 -0.10 3.44 16 3 C -0.18 -2.95 8.11 37.16 0.30 -2.65 16 4 C -0.11 -1.95 3.75 -27.89 -0.10 -2.05 16 5 C 0.49 7.22 7.70 36.01 0.28 7.50 16 6 O -0.52 -8.16 12.13 -18.75 -0.23 -8.39 16 7 O -0.52 -6.41 13.42 -39.25 -0.53 -6.94 16 8 N -0.61 -12.17 2.51 -158.28 -0.40 -12.57 16 9 C 0.24 5.64 4.17 -5.19 -0.02 5.62 16 10 C -0.53 -13.43 8.31 -34.44 -0.29 -13.71 16 11 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -24.30 13.29 55.43 0.74 -23.57 16 14 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 C 0.24 4.84 6.12 -83.79 -0.51 4.32 16 19 C -0.19 -3.74 9.15 -39.38 -0.36 -4.10 16 20 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 21 C -0.20 -3.27 10.04 -39.55 -0.40 -3.67 16 22 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 23 C -0.23 -4.02 7.02 -39.38 -0.28 -4.29 16 24 H 0.07 1.20 4.61 -51.93 -0.24 0.96 16 25 H 0.08 1.28 5.41 -51.93 -0.28 1.00 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.25 5.47 -51.93 -0.28 0.96 16 29 H 0.07 1.10 4.88 -51.93 -0.25 0.84 16 30 H 0.11 1.93 6.67 -51.93 -0.35 1.59 16 31 H 0.13 2.45 7.05 -51.93 -0.37 2.09 16 32 H 0.40 2.99 9.10 45.56 0.41 3.40 16 33 H 0.03 0.82 5.83 -51.93 -0.30 0.51 16 34 H 0.03 0.88 6.49 -51.93 -0.34 0.54 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 36 H 0.13 2.92 6.26 -52.48 -0.33 2.59 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.13 2.18 3.18 -52.49 -0.17 2.01 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -28.29 312.38 -6.96 -35.25 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.15 Total: 10.42 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.08 Total: -14.42 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.34 Total: -36.14 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.75 Total: -15.33 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.29 -6.96 -35.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694047883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.693 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds