Wall clock time and date at job start Thu Apr 9 2020 15:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46845 * 2 1 4 4 C 1.52993 * 109.47464 * 239.99714 * 2 1 3 5 5 C 1.50700 * 109.47158 * 59.84917 * 4 2 1 6 6 O 1.20825 * 120.00095 * 0.02562 * 5 4 2 7 7 O 1.34228 * 120.00014 * 179.97438 * 5 4 2 8 8 N 1.46500 * 109.46758 * 119.99602 * 2 1 3 9 9 C 1.46498 * 119.99791 * 125.59939 * 8 2 1 10 10 C 1.50706 * 109.47239 * 269.99997 * 9 8 2 11 11 H 1.08004 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00243 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00163 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47283 * 89.99435 * 14 12 10 16 16 H 1.48499 * 109.47334 * 210.00002 * 14 12 10 17 17 H 1.48501 * 109.47175 * 329.99769 * 14 12 10 18 18 C 1.39671 * 120.00467 * 305.60021 * 8 2 1 19 19 C 1.38910 * 120.07969 * 173.62009 * 18 8 2 20 20 C 1.38108 * 119.92795 * 179.97438 * 19 18 8 21 21 C 1.38283 * 120.07115 * 359.97438 * 20 19 18 22 22 C 1.38288 * 120.15158 * 0.02562 * 21 20 19 23 23 C 1.38102 * 120.07726 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47703 * 304.64792 * 1 2 3 25 25 H 1.09001 * 109.46981 * 64.64576 * 1 2 3 26 26 H 1.08996 * 109.47400 * 184.64302 * 1 2 3 27 27 H 1.09003 * 109.46537 * 176.97671 * 3 2 1 28 28 H 1.08998 * 109.47309 * 296.97198 * 3 2 1 29 29 H 1.08999 * 109.47430 * 56.98659 * 3 2 1 30 30 H 1.08997 * 109.47613 * 179.85602 * 4 2 1 31 31 H 1.09000 * 109.47138 * 299.85155 * 4 2 1 32 32 H 0.96705 * 116.99828 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.47482 * 29.99630 * 9 8 2 34 34 H 1.08996 * 109.47334 * 150.00338 * 9 8 2 35 35 H 0.96997 * 119.99824 * 180.02562 * 13 12 10 36 36 H 1.08004 * 120.03611 * 359.70002 * 19 18 8 37 37 H 1.07992 * 119.96105 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.92178 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.96199 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.03651 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5347 -0.0131 -2.4796 6 8 0.8384 0.9681 -2.3689 7 8 1.8590 -0.4718 -3.6987 8 7 2.0182 -0.6905 1.1962 9 6 2.9587 -1.8062 1.0654 10 6 2.1919 -3.0976 0.9405 11 1 1.1120 -3.0882 0.9574 12 6 2.8689 -4.2911 0.8058 13 7 4.1839 -4.3025 0.7857 14 14 1.9185 -5.8916 0.6502 15 1 1.6476 -6.1693 -0.7833 16 1 2.7197 -7.0012 1.2266 17 1 0.6324 -5.7769 1.3837 18 6 1.5872 -0.2853 2.4615 19 6 1.9425 -1.0191 3.5861 20 6 1.5150 -0.6153 4.8357 21 6 0.7344 0.5184 4.9681 22 6 0.3788 1.2513 3.8506 23 6 0.8029 0.8531 2.5981 24 1 -0.3634 0.5842 0.8454 25 1 -0.3633 0.4401 -0.9287 26 1 -0.3634 -1.0242 0.0832 27 1 3.1286 1.4429 0.0542 28 1 1.7216 1.9404 -0.9159 29 1 1.6331 1.9717 0.8617 30 1 3.1300 -0.7190 -1.2504 31 1 1.6789 -1.7497 -1.2478 32 1 1.5115 0.0159 -4.4580 33 1 3.5731 -1.6612 0.1769 34 1 3.5984 -1.8474 1.9469 35 1 4.6601 -5.1422 0.6906 36 1 2.5488 -1.9070 3.4830 37 1 1.7906 -1.1856 5.7104 38 1 0.4011 0.8318 5.9464 39 1 -0.2313 2.1360 3.9575 40 1 0.5245 1.4257 1.7257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694047883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:45 Heat of formation + Delta-G solvation = -56.718590 kcal Electronic energy + Delta-G solvation = -22567.799062 eV Core-core repulsion = 19347.721218 eV Total energy + Delta-G solvation = -3220.077844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82104 -40.49659 -38.23504 -37.02586 -35.22440 -33.69128 -32.02593 -30.69143 -29.28444 -28.25343 -28.02258 -24.70076 -23.61592 -23.07348 -22.06982 -19.99442 -19.17648 -18.56706 -17.84893 -17.58193 -16.97295 -16.71721 -16.32748 -15.95489 -15.39770 -15.23225 -14.70265 -14.60129 -14.36142 -13.95549 -13.88900 -13.56836 -13.43932 -13.17758 -12.96785 -12.88694 -12.72197 -12.37867 -12.29383 -12.26622 -12.22255 -11.99862 -11.64705 -11.53084 -11.29604 -10.94015 -10.56939 -10.41549 -9.59756 -8.31936 -7.78358 -6.29384 0.73529 0.95628 1.17788 1.37551 1.40410 1.49334 1.96092 2.38323 2.72663 3.11962 3.20868 3.60291 3.95570 4.09746 4.22518 4.30775 4.44848 4.49849 4.56068 4.67458 4.74873 4.78582 4.80441 4.89035 5.00699 5.03517 5.09712 5.18020 5.25314 5.34320 5.38472 5.44768 5.66914 5.72667 5.76082 5.81040 5.92965 6.14319 6.27005 6.58188 6.89668 6.97450 7.06088 7.41695 8.88008 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010333 B = 0.009621 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.055681 B = 2909.586367 C = 5075.907158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.198 3.802 3 C -0.174 4.174 4 C -0.115 4.115 5 C 0.498 3.502 6 O -0.522 6.522 7 O -0.512 6.512 8 N -0.614 5.614 9 C 0.262 3.738 10 C -0.528 4.528 11 H 0.048 0.952 12 C 0.020 3.980 13 N -0.922 5.922 14 Si 0.948 3.052 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.276 1.276 18 C 0.219 3.781 19 C -0.217 4.217 20 C -0.084 4.084 21 C -0.196 4.196 22 C -0.079 4.079 23 C -0.229 4.229 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.429 0.571 33 H 0.026 0.974 34 H 0.005 0.995 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 10.427 -2.289 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.113 3.887 3 C -0.231 4.231 4 C -0.153 4.153 5 C 0.342 3.658 6 O -0.413 6.413 7 O -0.326 6.326 8 N -0.321 5.321 9 C 0.141 3.859 10 C -0.567 4.567 11 H 0.066 0.934 12 C -0.180 4.180 13 N -0.562 5.562 14 Si 0.774 3.226 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.201 1.201 18 C 0.115 3.885 19 C -0.240 4.240 20 C -0.103 4.103 21 C -0.216 4.216 22 C -0.098 4.098 23 C -0.250 4.250 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.291 0.709 33 H 0.044 0.956 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.747 10.277 -2.165 11.972 hybrid contribution -0.127 -1.276 -0.529 1.387 sum -5.874 9.002 -2.693 11.081 Atomic orbital electron populations 1.22659 0.94403 1.01688 1.04497 1.19844 0.94164 0.91601 0.83073 1.22658 1.00682 0.95364 1.04416 1.21535 1.03413 1.01338 0.88985 1.22974 0.76311 0.81589 0.84924 1.90571 1.36702 1.26853 1.87166 1.84543 1.71925 1.59211 1.16872 1.47056 1.48244 1.34926 1.01919 1.18877 0.87740 0.83230 0.96022 1.21691 0.92988 0.92362 1.49636 0.93411 1.25611 0.95522 1.01863 0.95010 1.70015 1.07461 1.27794 1.50909 0.85703 0.78622 0.79750 0.78500 1.19716 1.20906 1.20050 1.18051 0.92643 0.92640 0.85184 1.20862 1.07845 1.02171 0.93088 1.21060 0.96551 0.96753 0.95903 1.21066 1.03614 0.97472 0.99430 1.21183 0.97805 0.99250 0.91537 1.21392 1.05622 0.98558 0.99477 0.90224 0.89379 0.94449 0.93517 0.89288 0.90556 0.87705 0.87556 0.70935 0.95638 0.97659 0.92583 0.88422 0.85574 0.84444 0.83775 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.82 7.93 71.98 0.57 -5.25 16 2 C 0.20 6.95 0.78 3.60 0.00 6.95 16 3 C -0.17 -5.35 8.11 71.98 0.58 -4.77 16 4 C -0.11 -3.97 3.75 29.85 0.11 -3.85 16 5 C 0.50 14.28 7.70 71.24 0.55 14.83 16 6 O -0.52 -15.53 12.13 21.97 0.27 -15.26 16 7 O -0.51 -11.83 13.42 -51.40 -0.69 -12.52 16 8 N -0.61 -25.47 2.51 -654.66 -1.65 -27.11 16 9 C 0.26 12.87 4.17 85.64 0.36 13.22 16 10 C -0.53 -27.86 8.31 25.60 0.21 -27.64 16 11 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 12 C 0.02 1.05 5.46 84.65 0.46 1.51 16 13 N -0.92 -51.92 13.29 21.45 0.28 -51.63 16 14 Si 0.95 42.97 29.54 68.60 2.03 45.00 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 C 0.22 8.79 6.12 38.22 0.23 9.03 16 19 C -0.22 -9.04 9.15 22.40 0.21 -8.83 16 20 C -0.08 -2.87 10.04 22.25 0.22 -2.65 16 21 C -0.20 -5.69 10.04 22.29 0.22 -5.47 16 22 C -0.08 -2.27 10.04 22.25 0.22 -2.04 16 23 C -0.23 -7.60 7.02 22.40 0.16 -7.44 16 24 H 0.08 2.50 4.61 -2.39 -0.01 2.49 16 25 H 0.09 2.75 5.41 -2.39 -0.01 2.74 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 2.60 5.47 -2.39 -0.01 2.59 16 29 H 0.08 2.24 4.88 -2.39 -0.01 2.23 16 30 H 0.10 3.74 6.67 -2.39 -0.02 3.72 16 31 H 0.11 4.18 7.05 -2.39 -0.02 4.16 16 32 H 0.43 5.21 9.10 -74.05 -0.67 4.54 16 33 H 0.03 1.29 5.83 -2.39 -0.01 1.28 16 34 H 0.01 0.30 6.49 -2.39 -0.02 0.28 16 35 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.10 4.67 6.26 -2.91 -0.02 4.65 16 37 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.15 4.41 3.18 -2.91 -0.01 4.40 16 Total: -1.00 -61.87 312.38 4.76 -57.11 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.41 Total: 26.83 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 4.12 Total: -22.40 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.36 Total: -78.74 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.42 Total: -27.79 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -61.87 4.76 -57.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694047883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.387 kcal (2) G-P(sol) polarization free energy of solvation -61.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds