Wall clock time and date at job start Thu Apr 9 2020 15:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99879 * 2 1 4 4 O 1.20827 * 119.99981 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00308 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47063 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46961 * 60.00131 * 6 5 3 8 8 C 1.52995 * 109.46967 * 299.99749 * 6 5 3 9 9 N 1.46497 * 109.46811 * 179.97438 * 6 5 3 10 10 C 1.38858 * 119.99932 * 185.50336 * 9 6 5 11 11 C 1.39562 * 119.84246 * 351.30507 * 10 9 6 12 12 C 1.36339 * 120.16187 * 179.71655 * 11 10 9 13 13 C 1.40888 * 119.83219 * 0.55097 * 12 11 10 14 14 C 1.41140 * 120.15076 * 179.69987 * 13 12 11 15 15 H 1.07999 * 119.99822 * 205.13488 * 14 13 12 16 16 C 1.39867 * 120.00200 * 25.13950 * 14 13 12 17 17 N 1.30902 * 119.99923 * 19.66067 * 16 14 13 18 18 Si 1.86804 * 119.99662 * 199.65938 * 16 14 13 19 19 H 1.48493 * 109.47071 * 60.00325 * 18 16 14 20 20 H 1.48501 * 109.46664 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46985 * 299.99676 * 18 16 14 22 22 C 1.40881 * 119.69112 * 359.72225 * 13 12 11 23 23 C 1.36339 * 119.83652 * 359.97438 * 22 13 12 24 24 H 1.08996 * 109.47401 * 60.00436 * 1 2 3 25 25 H 1.09004 * 109.46767 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47308 * 299.99917 * 1 2 3 27 27 H 1.08997 * 109.47112 * 59.99426 * 5 3 2 28 28 H 1.09003 * 109.46804 * 299.99641 * 5 3 2 29 29 H 1.09000 * 109.46835 * 172.09614 * 7 6 5 30 30 H 1.09005 * 109.46784 * 292.08596 * 7 6 5 31 31 H 1.09000 * 109.47655 * 52.09547 * 7 6 5 32 32 H 1.09001 * 109.47433 * 315.54066 * 8 6 5 33 33 H 1.08997 * 109.47119 * 75.54383 * 8 6 5 34 34 H 1.09001 * 109.46664 * 195.54464 * 8 6 5 35 35 H 0.97004 * 120.00511 * 5.51161 * 9 6 5 36 36 H 1.07998 * 119.92082 * 359.97342 * 11 10 9 37 37 H 1.08001 * 120.08545 * 180.27085 * 12 11 10 38 38 H 0.97004 * 119.99821 * 180.02562 * 17 16 14 39 39 H 1.08005 * 120.07961 * 179.97438 * 22 13 12 40 40 H 1.08007 * 119.91758 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7423 -0.0011 7 6 3.4534 3.4361 1.2482 8 6 3.4525 3.4354 -1.2503 9 7 5.4629 2.8190 -0.0011 10 6 6.0936 4.0508 0.1139 11 6 5.3420 5.2248 0.0463 12 6 5.9537 6.4375 0.1641 13 6 7.3496 6.5040 0.3428 14 6 7.9906 7.7560 0.4592 15 1 9.0326 7.8560 0.1934 16 6 7.2764 8.8673 0.9188 17 7 6.1672 8.6993 1.5932 18 14 7.9057 10.5913 0.5702 19 1 7.9890 10.8004 -0.8975 20 1 6.9743 11.5866 1.1594 21 1 9.2533 10.7573 1.1713 22 6 8.1026 5.3149 0.4044 23 6 7.4767 4.1090 0.2913 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9557 0.7810 -0.8907 28 1 3.9564 0.7808 0.8892 29 1 3.8756 4.4383 1.3212 30 1 2.3675 3.5034 1.1806 31 1 3.7275 2.8610 2.1326 32 1 3.6068 2.7947 -2.1185 33 1 2.3866 3.6246 -1.1232 34 1 3.9741 4.3809 -1.3992 35 1 5.9912 2.0094 -0.0814 36 1 4.2726 5.1724 -0.0955 37 1 5.3703 7.3451 0.1160 38 1 5.6717 9.4700 1.9117 39 1 9.1731 5.3586 0.5408 40 1 8.0528 3.1966 0.3378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694070349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:50 Heat of formation + Delta-G solvation = -48.461303 kcal Electronic energy + Delta-G solvation = -21550.199697 eV Core-core repulsion = 18330.479915 eV Total energy + Delta-G solvation = -3219.719781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.81226 -38.72251 -36.99392 -35.87940 -33.49338 -31.43724 -29.98966 -28.87201 -28.14819 -27.04176 -26.83943 -24.46058 -21.71932 -21.02509 -20.43367 -19.08543 -17.73053 -17.17270 -16.65922 -16.62674 -15.94591 -14.99853 -14.79226 -14.33489 -14.14691 -13.67453 -13.50953 -13.17186 -12.73149 -12.41806 -12.29527 -12.25377 -11.99568 -11.61851 -11.58322 -11.48312 -11.26711 -11.05678 -10.95762 -10.75487 -10.67961 -10.42771 -10.32323 -10.16033 -9.63548 -9.18549 -9.07110 -8.47466 -7.41628 -6.62995 -6.35474 -3.99781 2.11718 2.52850 2.95819 3.13056 3.16482 3.19646 3.38957 4.07935 4.28030 4.61755 4.77957 4.89060 4.92967 4.93945 5.00401 5.27290 5.35992 5.58928 5.73037 5.85797 6.07289 6.15599 6.21249 6.31332 6.35983 6.39781 6.46402 6.73865 6.83358 6.99359 7.02704 7.23938 7.39186 7.58175 7.69114 7.72625 7.87130 8.18599 8.32465 8.52778 8.73425 8.83575 9.09172 9.18976 10.39768 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036130 B = 0.003707 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.785203 B = 7552.261332 C = 8064.313184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.466 3.534 4 O -0.491 6.491 5 C -0.115 4.115 6 C 0.206 3.794 7 C -0.185 4.185 8 C -0.184 4.184 9 N -0.754 5.754 10 C 0.096 3.904 11 C -0.171 4.171 12 C -0.128 4.128 13 C 0.078 3.922 14 C -0.470 4.470 15 H 0.072 0.928 16 C 0.077 3.923 17 N -0.805 5.805 18 Si 0.901 3.099 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.190 4.190 23 C -0.157 4.157 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.382 0.618 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.277 0.723 39 H 0.090 0.910 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 -14.015 -2.673 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.308 3.692 4 O -0.378 6.378 5 C -0.153 4.153 6 C 0.118 3.882 7 C -0.243 4.243 8 C -0.242 4.242 9 N -0.390 5.390 10 C -0.001 4.001 11 C -0.192 4.192 12 C -0.148 4.148 13 C 0.075 3.925 14 C -0.501 4.501 15 H 0.090 0.910 16 C -0.139 4.139 17 N -0.432 5.432 18 Si 0.726 3.274 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.210 4.210 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.215 0.785 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.474 -13.491 -2.527 16.678 hybrid contribution 0.293 0.476 -0.038 0.560 sum -9.181 -13.015 -2.565 16.132 Atomic orbital electron populations 1.23239 0.76475 1.03478 1.02628 1.86504 1.23360 1.33774 1.84446 1.23527 0.91987 0.81207 0.72465 1.90622 1.67205 1.35695 1.44250 1.21633 0.87816 1.00053 1.05794 1.19546 0.82227 0.90468 0.95960 1.22710 1.02066 1.03499 0.96037 1.22746 1.02399 1.02652 0.96377 1.43901 1.02407 1.05969 1.86704 1.17203 0.91126 0.84552 1.07195 1.20574 0.98222 0.92052 1.08391 1.20918 0.95412 0.95807 1.02685 1.17489 0.91864 0.92146 0.91024 1.19324 0.97815 0.92933 1.40041 0.91023 1.25780 0.94457 1.00985 0.92659 1.69860 1.14754 1.32575 1.25983 0.86501 0.79403 0.81757 0.79749 1.19102 1.20613 1.19301 1.20526 0.97987 0.92141 1.10378 1.19818 0.92262 0.96719 1.09082 0.91892 0.88301 0.91871 0.87579 0.87480 0.89448 0.90688 0.93622 0.93817 0.90743 0.89819 0.78530 0.87295 0.86772 0.91268 0.89177 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.89 10.57 -39.26 -0.41 -4.30 16 3 C 0.47 5.74 7.40 36.01 0.27 6.01 16 4 O -0.49 -7.21 11.30 -18.75 -0.21 -7.42 16 5 C -0.11 -1.32 4.93 -27.88 -0.14 -1.45 16 6 C 0.21 3.11 0.80 -131.82 -0.11 3.00 16 7 C -0.19 -3.10 7.77 37.16 0.29 -2.81 16 8 C -0.18 -2.91 7.70 37.16 0.29 -2.62 16 9 N -0.75 -12.64 5.22 -45.86 -0.24 -12.88 16 10 C 0.10 2.04 6.19 -83.69 -0.52 1.52 16 11 C -0.17 -3.95 6.37 -39.77 -0.25 -4.20 16 12 C -0.13 -3.36 8.64 -39.26 -0.34 -3.70 16 13 C 0.08 2.10 5.56 -106.79 -0.59 1.51 16 14 C -0.47 -12.86 9.02 -37.87 -0.34 -13.21 16 15 H 0.07 1.90 7.92 -52.49 -0.42 1.48 16 16 C 0.08 2.00 5.08 -17.34 -0.09 1.91 16 17 N -0.80 -21.55 11.11 55.54 0.62 -20.93 16 18 Si 0.90 19.42 29.60 -169.99 -5.03 14.39 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 C -0.19 -4.72 9.74 -39.27 -0.38 -5.10 16 23 C -0.16 -3.48 9.83 -39.77 -0.39 -3.87 16 24 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.72 4.70 -51.93 -0.24 1.48 16 30 H 0.07 1.23 5.65 -51.93 -0.29 0.94 16 31 H 0.04 0.73 8.13 -51.93 -0.42 0.30 16 32 H 0.04 0.62 8.05 -51.93 -0.42 0.21 16 33 H 0.07 1.19 5.91 -51.93 -0.31 0.88 16 34 H 0.08 1.52 4.88 -51.93 -0.25 1.27 16 35 H 0.38 5.52 8.49 -40.82 -0.35 5.17 16 36 H 0.11 2.34 3.77 -52.49 -0.20 2.14 16 37 H 0.11 3.12 6.27 -52.49 -0.33 2.79 16 38 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 39 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 40 H 0.08 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -29.56 317.56 -7.06 -36.62 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.32 Total: 11.41 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -1.24 Total: -21.66 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.38 Total: -33.81 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.63 Total: -11.72 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.56 -7.06 -36.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694070349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.846 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds