Wall clock time and date at job start Thu Apr 9 2020 15:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99879 * 2 1 4 4 O 1.20827 * 119.99981 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00308 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47063 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46961 * 60.00131 * 6 5 3 8 8 C 1.52995 * 109.46967 * 299.99749 * 6 5 3 9 9 N 1.46497 * 109.46811 * 179.97438 * 6 5 3 10 10 C 1.38858 * 119.99932 * 185.50336 * 9 6 5 11 11 C 1.39562 * 119.84246 * 351.30507 * 10 9 6 12 12 C 1.36339 * 120.16187 * 179.71655 * 11 10 9 13 13 C 1.40888 * 119.83219 * 0.55097 * 12 11 10 14 14 C 1.41140 * 120.15076 * 179.69987 * 13 12 11 15 15 H 1.07999 * 119.99822 * 205.13488 * 14 13 12 16 16 C 1.39867 * 120.00200 * 25.13950 * 14 13 12 17 17 N 1.30902 * 119.99923 * 19.66067 * 16 14 13 18 18 Si 1.86804 * 119.99662 * 199.65938 * 16 14 13 19 19 H 1.48493 * 109.47071 * 60.00325 * 18 16 14 20 20 H 1.48501 * 109.46664 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46985 * 299.99676 * 18 16 14 22 22 C 1.40881 * 119.69112 * 359.72225 * 13 12 11 23 23 C 1.36339 * 119.83652 * 359.97438 * 22 13 12 24 24 H 1.08996 * 109.47401 * 60.00436 * 1 2 3 25 25 H 1.09004 * 109.46767 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47308 * 299.99917 * 1 2 3 27 27 H 1.08997 * 109.47112 * 59.99426 * 5 3 2 28 28 H 1.09003 * 109.46804 * 299.99641 * 5 3 2 29 29 H 1.09000 * 109.46835 * 172.09614 * 7 6 5 30 30 H 1.09005 * 109.46784 * 292.08596 * 7 6 5 31 31 H 1.09000 * 109.47655 * 52.09547 * 7 6 5 32 32 H 1.09001 * 109.47433 * 315.54066 * 8 6 5 33 33 H 1.08997 * 109.47119 * 75.54383 * 8 6 5 34 34 H 1.09001 * 109.46664 * 195.54464 * 8 6 5 35 35 H 0.97004 * 120.00511 * 5.51161 * 9 6 5 36 36 H 1.07998 * 119.92082 * 359.97342 * 11 10 9 37 37 H 1.08001 * 120.08545 * 180.27085 * 12 11 10 38 38 H 0.97004 * 119.99821 * 180.02562 * 17 16 14 39 39 H 1.08005 * 120.07961 * 179.97438 * 22 13 12 40 40 H 1.08007 * 119.91758 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7423 -0.0011 7 6 3.4534 3.4361 1.2482 8 6 3.4525 3.4354 -1.2503 9 7 5.4629 2.8190 -0.0011 10 6 6.0936 4.0508 0.1139 11 6 5.3420 5.2248 0.0463 12 6 5.9537 6.4375 0.1641 13 6 7.3496 6.5040 0.3428 14 6 7.9906 7.7560 0.4592 15 1 9.0326 7.8560 0.1934 16 6 7.2764 8.8673 0.9188 17 7 6.1672 8.6993 1.5932 18 14 7.9057 10.5913 0.5702 19 1 7.9890 10.8004 -0.8975 20 1 6.9743 11.5866 1.1594 21 1 9.2533 10.7573 1.1713 22 6 8.1026 5.3149 0.4044 23 6 7.4767 4.1090 0.2913 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9557 0.7810 -0.8907 28 1 3.9564 0.7808 0.8892 29 1 3.8756 4.4383 1.3212 30 1 2.3675 3.5034 1.1806 31 1 3.7275 2.8610 2.1326 32 1 3.6068 2.7947 -2.1185 33 1 2.3866 3.6246 -1.1232 34 1 3.9741 4.3809 -1.3992 35 1 5.9912 2.0094 -0.0814 36 1 4.2726 5.1724 -0.0955 37 1 5.3703 7.3451 0.1160 38 1 5.6717 9.4700 1.9117 39 1 9.1731 5.3586 0.5408 40 1 8.0528 3.1966 0.3378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694070349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:49 Heat of formation + Delta-G solvation = -65.471644 kcal Electronic energy + Delta-G solvation = -21550.937320 eV Core-core repulsion = 18330.479915 eV Total energy + Delta-G solvation = -3220.457405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.79876 -40.22234 -38.30819 -37.14701 -35.29907 -33.01223 -31.64261 -30.15329 -29.84574 -28.16927 -27.90109 -26.26799 -23.05193 -22.75381 -21.95012 -20.44175 -19.10963 -18.66941 -17.92510 -17.52436 -17.26591 -16.69767 -16.25605 -15.86476 -15.34406 -14.94328 -14.72892 -14.55595 -14.22931 -14.12919 -13.78973 -13.57431 -13.37181 -13.04082 -12.93019 -12.75861 -12.74221 -12.57315 -12.45132 -12.30232 -12.07237 -11.84057 -11.65039 -11.49407 -11.28698 -11.02340 -10.81379 -10.25004 -9.30727 -8.55043 -8.12499 -5.97950 1.14335 1.20131 1.22695 1.39593 1.50409 1.60939 1.68267 2.27666 2.85729 2.97239 3.54378 3.85591 3.96891 3.99134 4.25137 4.33959 4.36412 4.49854 4.55976 4.56581 4.63422 4.73915 4.83477 4.87769 4.97407 5.06291 5.07791 5.20576 5.31496 5.37025 5.42944 5.49131 5.57405 5.74237 5.86085 6.00901 6.22391 6.42798 6.68601 6.78375 6.91180 7.10955 7.20026 7.40088 8.49049 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036130 B = 0.003707 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.785203 B = 7552.261332 C = 8064.313184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.468 3.532 4 O -0.522 6.522 5 C -0.108 4.108 6 C 0.204 3.796 7 C -0.181 4.181 8 C -0.179 4.179 9 N -0.739 5.739 10 C 0.119 3.881 11 C -0.175 4.175 12 C -0.151 4.151 13 C 0.038 3.962 14 C -0.509 4.509 15 H 0.067 0.933 16 C 0.033 3.967 17 N -0.840 5.840 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.261 1.261 22 C -0.200 4.200 23 C -0.161 4.161 24 H 0.061 0.939 25 H 0.131 0.869 26 H 0.059 0.941 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.401 0.599 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.281 0.719 39 H 0.095 0.905 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 -16.599 -3.095 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.312 3.688 4 O -0.411 6.411 5 C -0.145 4.145 6 C 0.117 3.883 7 C -0.239 4.239 8 C -0.237 4.237 9 N -0.375 5.375 10 C 0.020 3.980 11 C -0.197 4.197 12 C -0.171 4.171 13 C 0.035 3.965 14 C -0.541 4.541 15 H 0.085 0.915 16 C -0.179 4.179 17 N -0.468 5.468 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.185 1.185 22 C -0.220 4.220 23 C -0.183 4.183 24 H 0.080 0.920 25 H 0.149 0.851 26 H 0.078 0.922 27 H 0.153 0.847 28 H 0.148 0.852 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.138 0.862 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.725 -16.144 -2.954 19.077 hybrid contribution 0.236 1.040 0.082 1.070 sum -9.489 -15.104 -2.872 18.067 Atomic orbital electron populations 1.23522 0.74913 1.05583 1.02440 1.86489 1.24851 1.32631 1.83906 1.23639 0.92294 0.81239 0.71651 1.90624 1.67901 1.36759 1.45847 1.21540 0.87514 0.97100 1.08355 1.19592 0.80874 0.93183 0.94667 1.22636 1.02083 1.01781 0.97389 1.22658 1.01863 1.01669 0.97514 1.43849 1.03417 1.04950 1.85276 1.17264 0.91024 0.85750 1.04003 1.20721 0.99021 0.91869 1.08044 1.20829 0.95345 0.96228 1.04695 1.17804 0.92579 0.93195 0.92872 1.19559 0.98067 0.94363 1.42077 0.91474 1.26593 0.94605 1.04807 0.91886 1.69934 1.16075 1.33823 1.26980 0.85393 0.79044 0.76551 0.79495 1.18849 1.19579 1.18547 1.20741 0.98378 0.92615 1.10308 1.20128 0.92848 0.97145 1.08188 0.92036 0.85090 0.92195 0.84725 0.85191 0.92927 0.90568 0.92792 0.91976 0.91036 0.92679 0.76376 0.86164 0.89131 0.90863 0.88673 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.57 10.57 -51.43 -0.54 -7.11 16 3 C 0.47 10.17 7.40 71.24 0.53 10.70 16 4 O -0.52 -14.46 11.30 21.96 0.25 -14.21 16 5 C -0.11 -2.02 4.93 29.85 0.15 -1.87 16 6 C 0.20 5.65 0.80 3.60 0.00 5.66 16 7 C -0.18 -5.86 7.77 71.98 0.56 -5.30 16 8 C -0.18 -5.38 7.70 71.98 0.55 -4.83 16 9 N -0.74 -22.50 5.22 -299.01 -1.56 -24.06 16 10 C 0.12 4.89 6.19 38.67 0.24 5.13 16 11 C -0.18 -8.23 6.37 22.15 0.14 -8.09 16 12 C -0.15 -8.28 8.64 22.48 0.19 -8.09 16 13 C 0.04 2.16 5.56 -21.27 -0.12 2.04 16 14 C -0.51 -29.14 9.02 23.38 0.21 -28.93 16 15 H 0.07 3.72 7.92 -2.91 -0.02 3.70 16 16 C 0.03 1.79 5.08 85.23 0.43 2.22 16 17 N -0.84 -47.03 11.11 21.82 0.24 -46.79 16 18 Si 0.97 41.02 29.60 68.60 2.03 43.06 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 C -0.20 -10.04 9.74 22.47 0.22 -9.82 16 23 C -0.16 -6.90 9.83 22.15 0.22 -6.68 16 24 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 25 H 0.13 0.85 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 27 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 2.08 4.70 -2.39 -0.01 2.07 16 30 H 0.08 2.46 5.65 -2.38 -0.01 2.45 16 31 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.06 1.61 8.05 -2.39 -0.02 1.60 16 33 H 0.07 2.22 5.91 -2.39 -0.01 2.20 16 34 H 0.05 1.98 4.88 -2.39 -0.01 1.97 16 35 H 0.40 9.69 8.49 -92.70 -0.79 8.91 16 36 H 0.12 5.30 3.77 -2.91 -0.01 5.29 16 37 H 0.09 5.29 6.27 -2.91 -0.02 5.28 16 38 H 0.28 14.42 8.30 -92.71 -0.77 13.65 16 39 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -67.16 317.56 5.22 -61.94 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.28 Total: 33.46 kcal Atomic # 6 Polarization: -50.81 SS G_CDS: 4.52 Total: -46.29 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -1.32 Total: -70.84 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.30 Total: -21.32 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.06 kcal Total: -67.16 5.22 -61.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694070349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.532 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds