Wall clock time and date at job start Thu Apr 9 2020 15:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48502 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46834 * 300.00009 * 3 2 1 6 6 H 1.48499 * 109.46984 * 60.00089 * 3 2 1 7 7 C 1.38649 * 120.00591 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00414 * 179.97438 * 7 2 1 9 9 O 1.34836 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.35744 * 117.00347 * 185.05300 * 9 7 2 11 11 C 1.38965 * 120.03263 * 174.46312 * 10 9 7 12 12 C 1.38125 * 120.07510 * 180.30391 * 11 10 9 13 13 C 1.38190 * 120.14685 * 359.44396 * 12 11 10 14 14 C 1.38968 * 120.05858 * 0.55550 * 13 12 11 15 15 N 1.39671 * 120.03741 * 179.69881 * 14 13 12 16 16 C 1.46501 * 120.00150 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47201 * 180.02562 * 16 15 14 18 18 H 1.09010 * 109.47978 * 304.97504 * 17 16 15 19 19 C 1.53090 * 109.48368 * 184.94406 * 17 16 15 20 20 C 1.53171 * 109.16851 * 182.40572 * 19 17 16 21 21 C 1.53177 * 109.03606 * 56.97747 * 20 19 17 22 22 C 1.53089 * 109.16438 * 303.02246 * 21 20 19 23 23 O 1.42897 * 109.48300 * 64.99716 * 17 16 15 24 24 C 1.38725 * 120.02960 * 354.49266 * 10 9 7 25 25 H 0.97002 * 120.00685 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.95914 * 0.02816 * 11 10 9 27 27 H 1.07999 * 119.92514 * 179.72923 * 12 11 10 28 28 H 1.08002 * 119.97389 * 180.25845 * 13 12 11 29 29 H 0.97003 * 120.00076 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.47488 * 299.99648 * 16 15 14 31 31 H 1.08998 * 109.47386 * 59.99904 * 16 15 14 32 32 H 1.09004 * 109.52145 * 302.31069 * 19 17 16 33 33 H 1.09008 * 109.52410 * 62.49544 * 19 17 16 34 34 H 1.09003 * 109.54222 * 297.11353 * 20 19 17 35 35 H 1.08995 * 109.62296 * 176.88982 * 20 19 17 36 36 H 1.08997 * 109.52812 * 183.11379 * 21 20 19 37 37 H 1.09008 * 109.52332 * 62.92951 * 21 20 19 38 38 H 1.08996 * 109.48093 * 297.62116 * 22 21 20 39 39 H 1.08998 * 109.48119 * 177.58870 * 22 21 20 40 40 H 1.07995 * 120.07395 * 359.94515 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0016 10 6 2.0701 -3.5044 0.1086 11 6 1.4355 -4.7346 0.2320 12 6 2.1829 -5.8905 0.3472 13 6 3.5633 -5.8291 0.3287 14 6 4.2039 -4.6021 0.2056 15 7 5.5992 -4.5400 0.1933 16 6 6.3882 -5.7689 0.3096 17 6 7.8783 -5.4239 0.2699 18 1 8.0952 -4.8524 -0.6327 19 6 8.7013 -6.7147 0.2672 20 6 10.1915 -6.3611 0.2881 21 6 10.4810 -5.4897 1.5141 22 6 9.5893 -4.2461 1.4687 23 8 8.2183 -4.6462 1.4195 24 6 3.4557 -3.4384 0.0955 25 1 -0.4851 0.8400 0.0004 26 1 0.3568 -4.7864 0.2422 27 1 1.6873 -6.8448 0.4474 28 1 4.1449 -6.7351 0.4148 29 1 6.0458 -3.6831 0.1077 30 1 6.1551 -6.2625 1.2531 31 1 6.1470 -6.4353 -0.5185 32 1 8.4548 -7.3058 1.1493 33 1 8.4757 -7.2887 -0.6317 34 1 10.4489 -5.8126 -0.6181 35 1 10.7838 -7.2745 0.3420 36 1 11.5282 -5.1874 1.5072 37 1 10.2705 -6.0560 2.4215 38 1 9.8288 -3.6593 0.5819 39 1 9.7603 -3.6434 2.3606 40 1 3.9511 -2.4836 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694998531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:54 Heat of formation + Delta-G solvation = -57.541971 kcal Electronic energy + Delta-G solvation = -20943.114203 eV Core-core repulsion = 17723.000654 eV Total energy + Delta-G solvation = -3220.113549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.76876 -38.88465 -36.91694 -34.73652 -33.89658 -32.21732 -31.80420 -29.21086 -28.23840 -26.27627 -25.17620 -24.27554 -22.58177 -21.55163 -20.57613 -20.31467 -17.80869 -17.32973 -16.63834 -16.26701 -15.57295 -15.07798 -14.98895 -14.64889 -14.52970 -14.10177 -13.80261 -13.73297 -13.27410 -13.12981 -12.95232 -12.81962 -12.40066 -12.14647 -11.60695 -11.56931 -11.47574 -11.28430 -10.98188 -10.91332 -10.71001 -10.53680 -10.50907 -10.32932 -9.68717 -9.33858 -9.29818 -8.70382 -7.27164 -6.68769 -6.35461 -3.94361 2.45802 2.64821 3.17906 3.19135 3.24316 3.51445 3.79630 4.04683 4.44486 4.51413 4.54609 4.73886 4.77967 4.89703 4.95942 5.15090 5.21194 5.29457 5.40059 5.43977 5.47215 5.55632 5.60386 5.67813 5.76353 5.77683 5.82442 5.98430 6.06305 6.34865 6.44090 6.71106 6.73351 7.02734 7.12214 7.22726 7.45966 7.56523 7.74761 8.10691 8.11704 8.29969 9.11063 9.84393 10.83184 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.003920 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.035559 B = 7140.780251 C = 8487.418489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.037 3.963 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.387 4.387 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.190 3.810 11 C -0.237 4.237 12 C -0.040 4.040 13 C -0.281 4.281 14 C 0.251 3.749 15 N -0.750 5.750 16 C 0.141 3.859 17 C 0.079 3.921 18 H 0.063 0.937 19 C -0.148 4.148 20 C -0.122 4.122 21 C -0.157 4.157 22 C 0.059 3.941 23 O -0.371 6.371 24 C -0.302 4.302 25 H 0.268 0.732 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.397 0.603 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.555 -11.326 0.599 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.464 4.464 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.135 3.865 11 C -0.258 4.258 12 C -0.059 4.059 13 C -0.304 4.304 14 C 0.149 3.851 15 N -0.381 5.381 16 C 0.016 3.984 17 C 0.021 3.979 18 H 0.080 0.920 19 C -0.186 4.186 20 C -0.159 4.159 21 C -0.195 4.195 22 C -0.018 4.018 23 O -0.290 6.290 24 C -0.326 4.326 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.231 0.769 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 19.053 -11.252 0.736 22.140 hybrid contribution 1.010 1.063 -0.198 1.480 sum 20.064 -10.188 0.539 22.509 Atomic orbital electron populations 1.70049 1.05896 1.27329 1.46856 1.25260 0.95806 0.98723 0.96816 0.85674 0.79109 0.80630 0.78150 1.19225 1.20257 1.20215 1.21354 0.91779 0.80903 1.52344 0.89142 1.83983 1.34248 1.11478 1.78590 1.19065 0.89486 0.87822 0.90079 1.20033 0.99316 0.90389 1.16055 1.20363 0.92987 0.96501 0.96047 1.20062 0.94450 0.95045 1.20816 1.17468 0.82209 0.93566 0.91848 1.44407 1.02759 1.07772 1.83203 1.21190 0.87300 0.88393 1.01481 1.22349 0.94470 0.91945 0.89101 0.91955 1.22133 0.95248 0.97820 1.03408 1.21573 0.96038 1.00108 0.98206 1.22203 1.00163 0.97907 0.99212 1.22571 0.81751 0.95361 1.02072 1.88040 1.25915 1.71203 1.43854 1.20501 0.93720 0.97201 1.21170 0.92229 0.86951 0.87244 0.87942 0.76916 0.91913 0.91347 0.90652 0.90545 0.91822 0.91368 0.91000 0.90989 0.93279 0.88833 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.67 55.48 0.76 -25.31 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.39 -11.21 9.49 30.88 0.29 -10.91 16 8 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 9 O -0.18 -5.34 9.76 0.05 0.00 -5.34 16 10 C 0.19 4.84 6.65 -39.13 -0.26 4.58 16 11 C -0.24 -5.34 9.99 -39.35 -0.39 -5.73 16 12 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 13 C -0.28 -5.21 9.31 -39.33 -0.37 -5.58 16 14 C 0.25 4.94 6.65 -83.81 -0.56 4.38 16 15 N -0.75 -12.03 5.68 -58.65 -0.33 -12.36 16 16 C 0.14 1.78 4.58 -4.04 -0.02 1.76 16 17 C 0.08 0.84 2.68 -26.69 -0.07 0.76 16 18 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 19 C -0.15 -1.21 5.42 -26.60 -0.14 -1.35 16 20 C -0.12 -0.86 6.03 -26.55 -0.16 -1.02 16 21 C -0.16 -1.15 6.14 -26.59 -0.16 -1.31 16 22 C 0.06 0.53 6.84 37.20 0.25 0.79 16 23 O -0.37 -4.50 10.35 -35.23 -0.36 -4.86 16 24 C -0.30 -6.97 9.01 -39.20 -0.35 -7.32 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.11 2.45 8.06 -52.49 -0.42 2.02 16 27 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.10 1.63 6.72 -52.49 -0.35 1.27 16 29 H 0.40 6.19 8.48 -40.82 -0.35 5.84 16 30 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 31 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.12 2.88 5.64 -52.49 -0.30 2.58 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -32.37 328.27 -8.33 -40.69 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.88 Total: 7.27 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.43 Total: -21.15 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.43 Total: -37.67 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.36 Total: -10.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.37 -8.33 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694998531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.847 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds