Wall clock time and date at job start Thu Apr 9 2020 15:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48502 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46834 * 300.00009 * 3 2 1 6 6 H 1.48499 * 109.46984 * 60.00089 * 3 2 1 7 7 C 1.38649 * 120.00591 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00414 * 179.97438 * 7 2 1 9 9 O 1.34836 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.35744 * 117.00347 * 185.05300 * 9 7 2 11 11 C 1.38965 * 120.03263 * 174.46312 * 10 9 7 12 12 C 1.38125 * 120.07510 * 180.30391 * 11 10 9 13 13 C 1.38190 * 120.14685 * 359.44396 * 12 11 10 14 14 C 1.38968 * 120.05858 * 0.55550 * 13 12 11 15 15 N 1.39671 * 120.03741 * 179.69881 * 14 13 12 16 16 C 1.46501 * 120.00150 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47201 * 180.02562 * 16 15 14 18 18 H 1.09010 * 109.47978 * 304.97504 * 17 16 15 19 19 C 1.53090 * 109.48368 * 184.94406 * 17 16 15 20 20 C 1.53171 * 109.16851 * 182.40572 * 19 17 16 21 21 C 1.53177 * 109.03606 * 56.97747 * 20 19 17 22 22 C 1.53089 * 109.16438 * 303.02246 * 21 20 19 23 23 O 1.42897 * 109.48300 * 64.99716 * 17 16 15 24 24 C 1.38725 * 120.02960 * 354.49266 * 10 9 7 25 25 H 0.97002 * 120.00685 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.95914 * 0.02816 * 11 10 9 27 27 H 1.07999 * 119.92514 * 179.72923 * 12 11 10 28 28 H 1.08002 * 119.97389 * 180.25845 * 13 12 11 29 29 H 0.97003 * 120.00076 * 180.02562 * 15 14 13 30 30 H 1.09002 * 109.47488 * 299.99648 * 16 15 14 31 31 H 1.08998 * 109.47386 * 59.99904 * 16 15 14 32 32 H 1.09004 * 109.52145 * 302.31069 * 19 17 16 33 33 H 1.09008 * 109.52410 * 62.49544 * 19 17 16 34 34 H 1.09003 * 109.54222 * 297.11353 * 20 19 17 35 35 H 1.08995 * 109.62296 * 176.88982 * 20 19 17 36 36 H 1.08997 * 109.52812 * 183.11379 * 21 20 19 37 37 H 1.09008 * 109.52332 * 62.92951 * 21 20 19 38 38 H 1.08996 * 109.48093 * 297.62116 * 22 21 20 39 39 H 1.08998 * 109.48119 * 177.58870 * 22 21 20 40 40 H 1.07995 * 120.07395 * 359.94515 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0016 10 6 2.0701 -3.5044 0.1086 11 6 1.4355 -4.7346 0.2320 12 6 2.1829 -5.8905 0.3472 13 6 3.5633 -5.8291 0.3287 14 6 4.2039 -4.6021 0.2056 15 7 5.5992 -4.5400 0.1933 16 6 6.3882 -5.7689 0.3096 17 6 7.8783 -5.4239 0.2699 18 1 8.0952 -4.8524 -0.6327 19 6 8.7013 -6.7147 0.2672 20 6 10.1915 -6.3611 0.2881 21 6 10.4810 -5.4897 1.5141 22 6 9.5893 -4.2461 1.4687 23 8 8.2183 -4.6462 1.4195 24 6 3.4557 -3.4384 0.0955 25 1 -0.4851 0.8400 0.0004 26 1 0.3568 -4.7864 0.2422 27 1 1.6873 -6.8448 0.4474 28 1 4.1449 -6.7351 0.4148 29 1 6.0458 -3.6831 0.1077 30 1 6.1551 -6.2625 1.2531 31 1 6.1470 -6.4353 -0.5185 32 1 8.4548 -7.3058 1.1493 33 1 8.4757 -7.2887 -0.6317 34 1 10.4489 -5.8126 -0.6181 35 1 10.7838 -7.2745 0.3420 36 1 11.5282 -5.1874 1.5072 37 1 10.2705 -6.0560 2.4215 38 1 9.8288 -3.6593 0.5819 39 1 9.7603 -3.6434 2.3606 40 1 3.9511 -2.4836 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694998531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:47:54 Heat of formation + Delta-G solvation = -78.857688 kcal Electronic energy + Delta-G solvation = -20944.038522 eV Core-core repulsion = 17723.000654 eV Total energy + Delta-G solvation = -3221.037868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84583 -40.37141 -38.61899 -36.13256 -34.57040 -34.22385 -32.88552 -30.75372 -29.77282 -27.45178 -27.09943 -25.01556 -23.73833 -23.04629 -21.98995 -21.16688 -19.73555 -18.99978 -17.53496 -17.38172 -16.78413 -16.58655 -16.34670 -15.87183 -15.65622 -15.50892 -15.32925 -15.15885 -14.60454 -14.43735 -14.15379 -14.00440 -13.59612 -13.48203 -13.12119 -12.96349 -12.59048 -12.46507 -12.27192 -12.13650 -12.03432 -11.96688 -11.62692 -11.31145 -11.22580 -10.95615 -10.60876 -10.41482 -9.09342 -8.45193 -8.22141 -6.13447 0.77559 0.93224 1.33864 1.43678 1.52522 2.18687 2.51339 2.78002 2.89942 3.27780 3.60474 3.71785 3.91587 3.93149 4.04237 4.15140 4.22382 4.25296 4.41735 4.48010 4.61362 4.63272 4.67681 4.75676 4.77353 4.86224 4.92433 5.05722 5.08191 5.13181 5.15584 5.17300 5.18529 5.38667 5.47508 5.76353 5.81437 6.04683 6.12501 6.27956 6.61096 6.84427 7.00266 7.83685 8.78756 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.003920 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.035559 B = 7140.780251 C = 8487.418489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.411 4.411 8 H 0.097 0.903 9 O -0.232 6.232 10 C 0.153 3.847 11 C -0.262 4.262 12 C -0.025 4.025 13 C -0.265 4.265 14 C 0.255 3.745 15 N -0.743 5.743 16 C 0.136 3.864 17 C 0.081 3.919 18 H 0.064 0.936 19 C -0.144 4.144 20 C -0.121 4.121 21 C -0.153 4.153 22 C 0.052 3.948 23 O -0.401 6.401 24 C -0.319 4.319 25 H 0.272 0.728 26 H 0.107 0.893 27 H 0.154 0.846 28 H 0.143 0.857 29 H 0.398 0.602 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.677 -13.288 0.535 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.487 4.487 8 H 0.115 0.885 9 O -0.139 6.139 10 C 0.102 3.898 11 C -0.283 4.283 12 C -0.043 4.043 13 C -0.288 4.288 14 C 0.151 3.849 15 N -0.372 5.372 16 C 0.012 3.988 17 C 0.023 3.977 18 H 0.082 0.918 19 C -0.182 4.182 20 C -0.159 4.159 21 C -0.191 4.191 22 C -0.024 4.024 23 O -0.320 6.320 24 C -0.343 4.343 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.172 0.828 28 H 0.161 0.839 29 H 0.232 0.768 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 22.245 -13.274 0.674 25.913 hybrid contribution 0.207 1.373 -0.145 1.396 sum 22.452 -11.901 0.530 25.417 Atomic orbital electron populations 1.70191 1.07969 1.28649 1.49237 1.26578 0.96869 1.02662 0.95989 0.84536 0.78071 0.74923 0.78666 1.17788 1.19110 1.19241 1.21819 0.92359 0.81579 1.52931 0.88546 1.83942 1.35903 1.12646 1.81385 1.19637 0.90749 0.87767 0.91659 1.20277 0.99652 0.90726 1.17645 1.20838 0.93280 0.96898 0.93310 1.20561 0.94592 0.95834 1.17791 1.17585 0.83850 0.92939 0.90570 1.44595 1.01541 1.09436 1.81630 1.21476 0.88224 0.86961 1.02108 1.22353 0.93380 0.93162 0.88761 0.91795 1.22113 0.95540 0.96454 1.04061 1.21599 0.95406 1.00738 0.98138 1.22176 1.00659 0.97055 0.99219 1.22747 0.80795 0.96398 1.02484 1.87989 1.27748 1.71756 1.44557 1.20507 0.93195 0.98143 1.22421 0.91867 0.87441 0.82819 0.83910 0.76838 0.91980 0.89402 0.90855 0.89031 0.91390 0.89927 0.89360 0.91519 0.92800 0.88597 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.35 13.67 21.61 0.30 -58.05 16 2 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 3 Si 1.02 44.52 29.55 68.60 2.03 46.55 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.41 -25.09 9.49 67.92 0.64 -24.45 16 8 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.73 9.76 -22.74 -0.22 -14.96 16 10 C 0.15 8.16 6.65 22.56 0.15 8.31 16 11 C -0.26 -11.97 9.99 22.42 0.22 -11.74 16 12 C -0.02 -0.88 10.03 22.23 0.22 -0.66 16 13 C -0.27 -8.92 9.31 22.43 0.21 -8.71 16 14 C 0.25 9.66 6.65 38.20 0.25 9.92 16 15 N -0.74 -22.36 5.68 -339.48 -1.93 -24.29 16 16 C 0.14 2.98 4.58 86.38 0.40 3.37 16 17 C 0.08 1.49 2.68 30.62 0.08 1.58 16 18 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 19 C -0.14 -1.86 5.42 30.68 0.17 -1.69 16 20 C -0.12 -1.31 6.03 30.71 0.19 -1.13 16 21 C -0.15 -1.84 6.14 30.68 0.19 -1.65 16 22 C 0.05 0.84 6.84 72.01 0.49 1.33 16 23 O -0.40 -9.00 10.35 -148.98 -1.54 -10.54 16 24 C -0.32 -15.07 9.01 22.52 0.20 -14.87 16 25 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 26 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 27 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.14 3.71 6.72 -2.91 -0.02 3.70 16 29 H 0.40 11.97 8.48 -92.71 -0.79 11.18 16 30 H 0.06 1.41 7.95 -2.39 -0.02 1.40 16 31 H 0.09 1.63 7.95 -2.39 -0.02 1.62 16 32 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 Total: -1.00 -75.11 328.27 2.77 -72.34 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.25 Total: 30.29 kcal Atomic # 6 Polarization: -45.23 SS G_CDS: 3.88 Total: -41.34 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.63 Total: -82.34 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -1.76 Total: -25.50 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -75.11 2.77 -72.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694998531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.513 kcal (2) G-P(sol) polarization free energy of solvation -75.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds