Wall clock time and date at job start Thu Apr 9 2020 15:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47220 * 2 1 4 4 O 1.42904 * 109.47295 * 240.00076 * 2 1 3 5 5 C 1.53005 * 109.46831 * 120.00063 * 2 1 3 6 6 C 1.52996 * 109.47028 * 300.00117 * 5 2 1 7 7 C 1.52998 * 109.47031 * 60.00460 * 5 2 1 8 8 N 1.46908 * 109.46527 * 180.02562 * 5 2 1 9 9 C 1.46899 * 110.99112 * 175.45482 * 8 5 2 10 10 H 1.08993 * 109.47960 * 13.82399 * 9 8 5 11 11 C 1.50708 * 109.47182 * 253.81966 * 9 8 5 12 12 H 1.08001 * 119.99796 * 329.59029 * 11 9 8 13 13 C 1.37870 * 119.99928 * 149.58586 * 11 9 8 14 14 N 1.31519 * 119.99927 * 185.26473 * 13 11 9 15 15 Si 1.86806 * 120.00074 * 5.26457 * 13 11 9 16 16 H 1.48501 * 109.46978 * 90.30261 * 15 13 11 17 17 H 1.48501 * 109.46994 * 210.29691 * 15 13 11 18 18 H 1.48492 * 109.47029 * 330.29951 * 15 13 11 19 19 C 1.50704 * 109.47101 * 133.82422 * 9 8 5 20 20 C 1.38244 * 119.99838 * 47.33936 * 19 9 8 21 21 C 1.38235 * 119.99782 * 179.81358 * 20 19 9 22 22 C 1.38229 * 120.00152 * 0.39489 * 21 20 19 23 23 C 1.38239 * 119.99975 * 359.86467 * 22 21 20 24 24 C 1.38232 * 120.00050 * 227.61782 * 19 9 8 25 25 H 1.09004 * 109.46853 * 59.99828 * 1 2 3 26 26 H 1.08995 * 109.46929 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47151 * 299.99892 * 1 2 3 28 28 H 1.09000 * 109.46970 * 59.99997 * 3 2 1 29 29 H 1.09004 * 109.47147 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47591 * 300.00031 * 3 2 1 31 31 H 0.96699 * 113.99646 * 299.99904 * 4 2 1 32 32 H 1.08989 * 109.47564 * 59.99855 * 6 5 2 33 33 H 1.09000 * 109.47110 * 180.02562 * 6 5 2 34 34 H 1.09004 * 109.47041 * 299.99698 * 6 5 2 35 35 H 1.08993 * 109.47346 * 64.66246 * 7 5 2 36 36 H 1.09004 * 109.46889 * 184.66717 * 7 5 2 37 37 H 1.09001 * 109.46658 * 304.65716 * 7 5 2 38 38 H 1.00896 * 110.99893 * 299.40342 * 8 5 2 39 39 H 0.96999 * 119.99722 * 180.02562 * 14 13 11 40 40 H 1.07997 * 119.99641 * 0.02562 * 20 19 9 41 41 H 1.08003 * 119.99591 * 180.23740 * 21 20 19 42 42 H 1.08001 * 120.00161 * 179.83131 * 22 21 20 43 43 H 1.07999 * 120.00212 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.00496 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5299 -0.0001 2.4985 7 6 1.5300 -2.1638 1.2492 8 7 3.5090 -0.7207 1.2495 9 6 4.0353 -1.3102 2.4879 10 1 3.2341 -1.8317 3.0113 11 6 4.5844 -0.2186 3.3701 12 1 5.0031 0.6735 2.9282 13 6 4.5521 -0.3588 4.7413 14 7 4.9350 0.6349 5.5131 15 14 3.9644 -1.9601 5.5029 16 1 5.1210 -2.8720 5.6922 17 1 3.3340 -1.6807 6.8181 18 1 2.9710 -2.6005 4.6039 19 6 5.1343 -2.2854 2.1526 20 6 6.1320 -1.9245 1.2663 21 6 7.1421 -2.8176 0.9617 22 6 7.1502 -4.0745 1.5370 23 6 6.1495 -4.4373 2.4191 24 6 5.1415 -3.5428 2.7268 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.7211 -1.5952 -1.2329 32 1 0.4400 0.0000 2.4985 33 1 1.8936 -0.5136 3.3885 34 1 1.8933 1.0276 2.4985 35 1 1.9600 -2.7011 0.4040 36 1 1.8234 -2.6529 2.1781 37 1 0.4432 -2.1649 1.1656 38 1 3.8709 -1.1999 0.4387 39 1 4.9126 0.5361 6.4778 40 1 6.1240 -0.9435 0.8146 41 1 7.9237 -2.5342 0.2723 42 1 7.9379 -4.7732 1.2969 43 1 6.1556 -5.4194 2.8683 44 1 4.3599 -3.8263 3.4160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229168564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:27 Heat of formation + Delta-G solvation = -21.190802 kcal Electronic energy + Delta-G solvation = -23323.425042 eV Core-core repulsion = 20240.720893 eV Total energy + Delta-G solvation = -3082.704149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.60316 -38.42189 -35.51746 -33.20315 -31.95850 -30.60737 -30.29032 -28.79734 -27.19201 -26.97962 -25.80695 -22.94734 -22.05298 -21.73134 -19.81025 -18.37395 -17.11290 -16.88046 -15.91383 -15.01102 -14.87836 -14.50388 -14.47044 -14.03319 -13.88069 -13.58000 -12.87423 -12.79397 -12.61894 -12.54043 -12.28420 -12.14924 -11.92288 -11.72062 -11.54351 -11.24507 -11.15950 -10.99773 -10.89414 -10.82059 -10.59290 -10.47416 -10.35333 -10.03897 -9.69275 -9.48384 -9.31166 -8.62736 -8.27244 -7.89709 -7.29671 -6.11015 -4.04970 2.02888 2.08855 3.19517 3.25798 3.31347 4.33926 4.43461 4.52634 4.89414 5.06324 5.17995 5.24401 5.43548 5.48211 5.50842 5.53454 5.57117 5.65428 5.81330 5.90102 5.96775 6.06685 6.10704 6.17290 6.21393 6.25287 6.26421 6.38999 6.40082 6.45357 6.55036 6.69013 6.70659 6.83277 6.90531 7.07429 7.11165 7.17559 7.41392 7.58447 7.72588 7.90693 7.96472 8.36091 8.68593 9.04317 9.51875 11.01639 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.008386 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.202415 B = 3338.127656 C = 4340.243781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.142 3.858 3 C -0.128 4.128 4 O -0.559 6.559 5 C 0.095 3.905 6 C -0.135 4.135 7 C -0.191 4.191 8 N -0.653 5.653 9 C 0.206 3.794 10 H 0.040 0.960 11 C -0.470 4.470 12 H 0.083 0.917 13 C 0.073 3.927 14 N -0.893 5.893 15 Si 0.856 3.144 16 H -0.272 1.272 17 H -0.290 1.290 18 H -0.263 1.263 19 C -0.055 4.055 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.148 4.148 23 C -0.123 4.123 24 C -0.141 4.141 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.365 0.635 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.327 0.673 39 H 0.263 0.737 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.894 -6.101 -9.332 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.102 3.898 3 C -0.185 4.185 4 O -0.365 6.365 5 C 0.002 3.998 6 C -0.193 4.193 7 C -0.250 4.250 8 N -0.283 5.283 9 C 0.098 3.902 10 H 0.057 0.943 11 C -0.508 4.508 12 H 0.101 0.899 13 C -0.129 4.129 14 N -0.531 5.531 15 Si 0.685 3.315 16 H -0.198 1.198 17 H -0.216 1.216 18 H -0.189 1.189 19 C -0.057 4.057 20 C -0.122 4.122 21 C -0.142 4.142 22 C -0.166 4.166 23 C -0.141 4.141 24 C -0.160 4.160 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.212 0.788 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.544 -4.773 -9.000 11.598 hybrid contribution -0.588 -2.553 0.814 2.743 sum -6.132 -7.326 -8.186 12.581 Atomic orbital electron populations 1.22629 0.96733 1.02018 1.02533 1.21206 0.91259 0.93574 0.83801 1.21650 1.03761 0.92377 1.00739 1.86560 1.77409 1.28147 1.44351 1.21418 0.90058 0.92690 0.95603 1.21936 0.97972 1.02413 0.96943 1.22745 1.01087 0.99063 1.02116 1.60847 1.03708 1.59460 1.04322 1.18999 0.90521 0.91628 0.89085 0.94277 1.20889 1.38131 1.02580 0.89190 0.89863 1.24941 0.95220 0.95469 0.97252 1.69883 1.48177 1.30646 1.04397 0.87279 0.79773 0.85588 0.78866 1.19803 1.21630 1.18891 1.21057 0.98794 0.93029 0.92811 1.20985 0.93839 0.99196 0.98174 1.21077 0.98562 0.94205 1.00311 1.20870 0.99150 0.96953 0.99646 1.20948 0.95363 0.99008 0.98773 1.21033 0.99345 0.94339 1.01240 0.92351 0.92564 0.91169 0.91181 0.90167 0.93705 0.78831 0.94006 0.91517 0.90855 0.93128 0.92021 0.92493 0.85489 0.92676 0.85723 0.87030 0.87303 0.87351 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.12 37.16 0.30 -1.90 16 2 C 0.14 2.06 0.69 -90.62 -0.06 2.00 16 3 C -0.13 -1.97 8.33 37.16 0.31 -1.66 16 4 O -0.56 -8.08 12.37 -35.23 -0.44 -8.51 16 5 C 0.09 1.56 0.23 -131.60 -0.03 1.53 16 6 C -0.14 -2.43 7.18 37.16 0.27 -2.17 16 7 C -0.19 -2.85 7.65 37.16 0.28 -2.57 16 8 N -0.65 -12.46 4.97 -95.45 -0.47 -12.93 16 9 C 0.21 4.49 0.95 -70.01 -0.07 4.42 16 10 H 0.04 0.89 1.85 -51.93 -0.10 0.79 16 11 C -0.47 -12.38 8.25 -34.44 -0.28 -12.66 16 12 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 15 Si 0.86 20.82 24.83 -169.99 -4.22 16.60 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 18 H -0.26 -5.96 5.62 56.52 0.32 -5.64 16 19 C -0.06 -1.16 4.49 -104.62 -0.47 -1.63 16 20 C -0.10 -2.02 8.69 -39.58 -0.34 -2.36 16 21 C -0.12 -2.11 10.05 -39.59 -0.40 -2.51 16 22 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 23 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 24 C -0.14 -2.83 8.47 -39.58 -0.34 -3.17 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.62 6.33 -51.93 -0.33 0.29 16 27 H 0.07 0.84 6.43 -51.93 -0.33 0.50 16 28 H 0.07 1.06 6.43 -51.93 -0.33 0.73 16 29 H 0.08 1.40 7.60 -51.93 -0.39 1.01 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.37 4.22 7.44 45.56 0.34 4.56 16 32 H 0.04 0.63 6.43 -51.94 -0.33 0.29 16 33 H 0.07 1.39 6.16 -51.93 -0.32 1.07 16 34 H 0.07 1.41 6.43 -51.93 -0.33 1.08 16 35 H 0.05 0.69 7.02 -51.93 -0.36 0.32 16 36 H 0.06 1.05 6.53 -51.93 -0.34 0.71 16 37 H 0.06 0.73 6.19 -51.93 -0.32 0.41 16 38 H 0.33 6.02 6.88 -39.29 -0.27 5.75 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.12 2.42 7.88 -52.49 -0.41 2.01 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.11 2.13 6.06 -52.49 -0.32 1.81 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -28.99 327.10 -7.07 -36.06 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -5.92 Total: 15.69 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -1.72 Total: -26.14 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.30 Total: -38.62 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.44 Total: -8.51 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.22 Total: 16.60 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.99 -7.07 -36.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229168564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.865 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds