Wall clock time and date at job start Thu Apr 9 2020 15:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47220 * 2 1 4 4 O 1.42904 * 109.47295 * 240.00076 * 2 1 3 5 5 C 1.53005 * 109.46831 * 120.00063 * 2 1 3 6 6 C 1.52996 * 109.47028 * 300.00117 * 5 2 1 7 7 C 1.52998 * 109.47031 * 60.00460 * 5 2 1 8 8 N 1.46908 * 109.46527 * 180.02562 * 5 2 1 9 9 C 1.46899 * 110.99112 * 175.45482 * 8 5 2 10 10 H 1.08993 * 109.47960 * 13.82399 * 9 8 5 11 11 C 1.50708 * 109.47182 * 253.81966 * 9 8 5 12 12 H 1.08001 * 119.99796 * 329.59029 * 11 9 8 13 13 C 1.37870 * 119.99928 * 149.58586 * 11 9 8 14 14 N 1.31519 * 119.99927 * 185.26473 * 13 11 9 15 15 Si 1.86806 * 120.00074 * 5.26457 * 13 11 9 16 16 H 1.48501 * 109.46978 * 90.30261 * 15 13 11 17 17 H 1.48501 * 109.46994 * 210.29691 * 15 13 11 18 18 H 1.48492 * 109.47029 * 330.29951 * 15 13 11 19 19 C 1.50704 * 109.47101 * 133.82422 * 9 8 5 20 20 C 1.38244 * 119.99838 * 47.33936 * 19 9 8 21 21 C 1.38235 * 119.99782 * 179.81358 * 20 19 9 22 22 C 1.38229 * 120.00152 * 0.39489 * 21 20 19 23 23 C 1.38239 * 119.99975 * 359.86467 * 22 21 20 24 24 C 1.38232 * 120.00050 * 227.61782 * 19 9 8 25 25 H 1.09004 * 109.46853 * 59.99828 * 1 2 3 26 26 H 1.08995 * 109.46929 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47151 * 299.99892 * 1 2 3 28 28 H 1.09000 * 109.46970 * 59.99997 * 3 2 1 29 29 H 1.09004 * 109.47147 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47591 * 300.00031 * 3 2 1 31 31 H 0.96699 * 113.99646 * 299.99904 * 4 2 1 32 32 H 1.08989 * 109.47564 * 59.99855 * 6 5 2 33 33 H 1.09000 * 109.47110 * 180.02562 * 6 5 2 34 34 H 1.09004 * 109.47041 * 299.99698 * 6 5 2 35 35 H 1.08993 * 109.47346 * 64.66246 * 7 5 2 36 36 H 1.09004 * 109.46889 * 184.66717 * 7 5 2 37 37 H 1.09001 * 109.46658 * 304.65716 * 7 5 2 38 38 H 1.00896 * 110.99893 * 299.40342 * 8 5 2 39 39 H 0.96999 * 119.99722 * 180.02562 * 14 13 11 40 40 H 1.07997 * 119.99641 * 0.02562 * 20 19 9 41 41 H 1.08003 * 119.99591 * 180.23740 * 21 20 19 42 42 H 1.08001 * 120.00161 * 179.83131 * 22 21 20 43 43 H 1.07999 * 120.00212 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.00496 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5299 -0.0001 2.4985 7 6 1.5300 -2.1638 1.2492 8 7 3.5090 -0.7207 1.2495 9 6 4.0353 -1.3102 2.4879 10 1 3.2341 -1.8317 3.0113 11 6 4.5844 -0.2186 3.3701 12 1 5.0031 0.6735 2.9282 13 6 4.5521 -0.3588 4.7413 14 7 4.9350 0.6349 5.5131 15 14 3.9644 -1.9601 5.5029 16 1 5.1210 -2.8720 5.6922 17 1 3.3340 -1.6807 6.8181 18 1 2.9710 -2.6005 4.6039 19 6 5.1343 -2.2854 2.1526 20 6 6.1320 -1.9245 1.2663 21 6 7.1421 -2.8176 0.9617 22 6 7.1502 -4.0745 1.5370 23 6 6.1495 -4.4373 2.4191 24 6 5.1415 -3.5428 2.7268 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.7211 -1.5952 -1.2329 32 1 0.4400 0.0000 2.4985 33 1 1.8936 -0.5136 3.3885 34 1 1.8933 1.0276 2.4985 35 1 1.9600 -2.7011 0.4040 36 1 1.8234 -2.6529 2.1781 37 1 0.4432 -2.1649 1.1656 38 1 3.8709 -1.1999 0.4387 39 1 4.9126 0.5361 6.4778 40 1 6.1240 -0.9435 0.8146 41 1 7.9237 -2.5342 0.2723 42 1 7.9379 -4.7732 1.2969 43 1 6.1556 -5.4194 2.8683 44 1 4.3599 -3.8263 3.4160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229168564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:46:26 Heat of formation + Delta-G solvation = -41.565254 kcal Electronic energy + Delta-G solvation = -23324.308545 eV Core-core repulsion = 20240.720893 eV Total energy + Delta-G solvation = -3083.587652 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96838 -39.79179 -36.92618 -34.81724 -33.71682 -31.93239 -31.70462 -30.16646 -28.74835 -28.42626 -27.15702 -24.60903 -23.45861 -23.07900 -21.36566 -19.69371 -18.99898 -18.33662 -17.28339 -16.63039 -16.31789 -16.01678 -15.67872 -15.44692 -15.32022 -15.00610 -14.69517 -14.21879 -14.05233 -13.93712 -13.69513 -13.49697 -13.23204 -13.03793 -12.79162 -12.76365 -12.66880 -12.53210 -12.36935 -12.26758 -12.09548 -11.86844 -11.83450 -11.56431 -11.31401 -11.28414 -10.75898 -10.54263 -9.70614 -9.39906 -8.84790 -8.25135 -6.21654 0.58681 0.65300 1.23770 1.28519 1.33688 2.30203 2.95882 3.15897 3.32643 3.61710 3.81840 4.02608 4.11811 4.21100 4.23626 4.30097 4.31155 4.38345 4.40127 4.70347 4.74748 4.76054 4.82509 4.88679 4.92037 4.94384 4.96515 5.06512 5.08547 5.14173 5.22871 5.28955 5.29873 5.44184 5.57332 5.64218 5.66445 5.68944 5.72600 5.92173 6.14844 6.26637 6.68614 6.82510 6.92606 6.99551 7.39714 8.91824 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.008386 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.202415 B = 3338.127656 C = 4340.243781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.149 3.851 3 C -0.129 4.129 4 O -0.568 6.568 5 C 0.091 3.909 6 C -0.132 4.132 7 C -0.185 4.185 8 N -0.663 5.663 9 C 0.219 3.781 10 H 0.035 0.965 11 C -0.457 4.457 12 H 0.033 0.967 13 C 0.018 3.982 14 N -0.947 5.947 15 Si 0.912 3.088 16 H -0.271 1.271 17 H -0.294 1.294 18 H -0.239 1.239 19 C -0.080 4.080 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.138 4.138 23 C -0.123 4.123 24 C -0.160 4.160 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.380 0.620 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.332 0.668 39 H 0.261 0.739 40 H 0.112 0.888 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.674 -9.147 -11.139 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.108 3.892 3 C -0.186 4.186 4 O -0.376 6.376 5 C -0.001 4.001 6 C -0.190 4.190 7 C -0.244 4.244 8 N -0.294 5.294 9 C 0.111 3.889 10 H 0.052 0.948 11 C -0.496 4.496 12 H 0.052 0.948 13 C -0.179 4.179 14 N -0.588 5.588 15 Si 0.739 3.261 16 H -0.197 1.197 17 H -0.220 1.220 18 H -0.163 1.163 19 C -0.082 4.082 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.156 4.156 23 C -0.141 4.141 24 C -0.178 4.178 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.151 0.849 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.159 0.841 42 H 0.166 0.834 43 H 0.157 0.843 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.342 -7.847 -10.847 14.813 hybrid contribution -0.265 -1.571 1.223 2.009 sum -6.607 -9.418 -9.624 14.999 Atomic orbital electron populations 1.22569 0.94120 1.03446 1.03214 1.21078 0.92998 0.92339 0.82772 1.21625 1.01849 0.93824 1.01304 1.86538 1.77828 1.29378 1.43811 1.21538 0.88336 0.94208 0.95984 1.21897 0.99974 1.00674 0.96412 1.22657 1.02912 0.97195 1.01598 1.60633 1.05846 1.59503 1.03383 1.18632 0.90660 0.90236 0.89387 0.94771 1.21013 1.36546 1.02249 0.89802 0.94827 1.25616 0.95948 0.98454 0.97841 1.70042 1.51270 1.33037 1.04482 0.86366 0.79846 0.81897 0.78019 1.19654 1.22042 1.16341 1.20912 0.98827 0.93754 0.94676 1.21017 0.94800 0.99444 0.98656 1.21428 0.98150 0.94053 1.00250 1.21342 0.99291 0.97010 0.97929 1.21337 0.94493 0.99790 0.98510 1.21150 1.00496 0.94607 1.01580 0.91201 0.90733 0.91025 0.91599 0.93123 0.92152 0.77155 0.90765 0.94805 0.93233 0.91606 0.94223 0.89727 0.84922 0.92977 0.87011 0.84108 0.83351 0.84295 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 8.12 71.98 0.58 -3.13 16 2 C 0.15 4.09 0.69 -10.79 -0.01 4.09 16 3 C -0.13 -3.98 8.33 71.98 0.60 -3.38 16 4 O -0.57 -15.17 12.37 -148.98 -1.84 -17.01 16 5 C 0.09 2.94 0.23 3.53 0.00 2.94 16 6 C -0.13 -4.80 7.18 71.98 0.52 -4.28 16 7 C -0.18 -5.09 7.65 71.98 0.55 -4.54 16 8 N -0.66 -25.85 4.97 -455.90 -2.27 -28.12 16 9 C 0.22 9.81 0.95 43.43 0.04 9.85 16 10 H 0.03 1.57 1.85 -2.39 0.00 1.57 16 11 C -0.46 -25.48 8.25 25.60 0.21 -25.27 16 12 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 13 C 0.02 1.06 5.47 84.65 0.46 1.52 16 14 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 15 Si 0.91 44.12 24.83 68.60 1.70 45.82 16 16 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 18 H -0.24 -10.49 5.62 99.48 0.56 -9.93 16 19 C -0.08 -3.35 4.49 -19.86 -0.09 -3.44 16 20 C -0.12 -4.66 8.69 22.27 0.19 -4.47 16 21 C -0.12 -3.82 10.05 22.27 0.22 -3.59 16 22 C -0.14 -3.97 10.05 22.27 0.22 -3.74 16 23 C -0.12 -3.92 10.05 22.27 0.22 -3.69 16 24 C -0.16 -6.15 8.47 22.27 0.19 -5.96 16 25 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.07 1.31 6.33 -2.39 -0.02 1.30 16 27 H 0.07 1.50 6.43 -2.39 -0.02 1.48 16 28 H 0.07 2.05 6.43 -2.39 -0.02 2.03 16 29 H 0.05 1.84 7.60 -2.38 -0.02 1.82 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.38 7.58 7.44 -74.06 -0.55 7.03 16 32 H 0.07 2.15 6.43 -2.39 -0.02 2.13 16 33 H 0.03 1.43 6.16 -2.39 -0.01 1.41 16 34 H 0.05 1.99 6.43 -2.38 -0.02 1.98 16 35 H 0.07 1.60 7.02 -2.39 -0.02 1.59 16 36 H 0.04 1.27 6.53 -2.39 -0.02 1.26 16 37 H 0.08 1.85 6.19 -2.39 -0.01 1.84 16 38 H 0.33 12.31 6.88 -89.70 -0.62 11.69 16 39 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.11 4.50 7.88 -2.91 -0.02 4.47 16 41 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 43 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 44 H 0.10 3.91 6.06 -2.91 -0.02 3.90 16 Total: -1.00 -67.15 327.10 1.52 -65.63 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -0.30 Total: 39.77 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 3.93 Total: -47.09 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -1.97 Total: -87.12 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -1.84 Total: -17.01 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.70 Total: 45.82 kcal Total: -67.15 1.52 -65.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229168564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.064 kcal (2) G-P(sol) polarization free energy of solvation -67.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds