Wall clock time and date at job start Mon Mar 30 2020 23:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.46975 * 126.91407 * 39.08519 * 3 2 1 5 5 C 1.39722 * 133.44260 * 359.95841 * 4 3 2 6 6 C 1.36503 * 119.86601 * 179.97438 * 5 4 3 7 7 C 1.39439 * 120.37142 * 359.97438 * 6 5 4 8 8 O 1.35713 * 119.73860 * 179.97438 * 7 6 5 9 9 C 1.34842 * 117.00276 * 354.44117 * 8 7 6 10 10 H 1.07996 * 120.00113 * 5.04470 * 9 8 7 11 11 C 1.38505 * 119.99619 * 185.05491 * 9 8 7 12 12 N 1.31643 * 120.00460 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99578 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47423 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47230 * 119.99986 * 13 11 9 16 16 H 1.48497 * 109.47278 * 239.99816 * 13 11 9 17 17 C 1.38502 * 120.52042 * 0.02562 * 7 6 5 18 18 C 1.39060 * 119.77198 * 359.97438 * 17 7 6 19 19 N 1.38589 * 132.23168 * 179.97438 * 18 17 7 20 20 C 1.36895 * 130.20774 * 359.97438 * 19 18 17 21 21 C 1.34955 * 120.91789 * 179.97438 * 20 19 18 22 22 C 1.40322 * 120.34678 * 0.02562 * 21 20 19 23 23 C 1.36260 * 119.42601 * 0.02562 * 22 21 20 24 24 C 1.37035 * 109.98548 * 179.73632 * 19 18 17 25 25 H 1.08003 * 120.06228 * 359.97438 * 5 4 3 26 26 H 1.08004 * 119.81360 * 180.02562 * 6 5 4 27 27 H 0.97003 * 120.00247 * 180.02562 * 12 11 9 28 28 H 1.08000 * 120.11649 * 180.02562 * 17 7 6 29 29 H 1.08004 * 119.54419 * 359.97438 * 20 19 18 30 30 H 1.07999 * 119.82144 * 180.02562 * 21 20 19 31 31 H 1.07996 * 120.28331 * 179.97438 * 22 21 20 32 32 H 1.08005 * 120.26882 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4511 -0.9111 -0.7409 5 6 3.2176 -1.9809 -1.6088 6 6 4.2710 -2.6540 -2.1569 7 6 5.5802 -2.2798 -1.8561 8 8 6.6179 -2.9584 -2.4079 9 6 6.3157 -4.0488 -3.1412 10 1 5.2834 -4.2999 -3.3354 11 6 7.3291 -4.8470 -3.6452 12 7 8.5875 -4.5409 -3.4089 13 14 6.9104 -6.3581 -4.6605 14 1 5.4353 -6.4803 -4.7811 15 1 7.5079 -6.2264 -6.0137 16 1 7.4551 -7.5685 -3.9946 17 6 5.8297 -1.2219 -0.9978 18 6 4.7669 -0.5265 -0.4316 19 7 4.7166 0.5485 0.4416 20 6 5.7293 1.2638 1.0218 21 6 5.4633 2.2911 1.8557 22 6 4.1364 2.6448 2.1440 23 6 3.1174 1.9416 1.5750 24 6 3.4126 0.8785 0.7036 25 1 2.2055 -2.2746 -1.8454 26 1 4.0895 -3.4806 -2.8280 27 1 9.2973 -5.0998 -3.7622 28 1 6.8463 -0.9373 -0.7697 29 1 6.7555 1.0025 0.8094 30 1 6.2761 2.8437 2.3034 31 1 3.9247 3.4668 2.8118 32 1 2.0910 2.2025 1.7870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004053743.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:31 Heat of formation + Delta-G solvation = 92.979657 kcal Electronic energy + Delta-G solvation = -19556.250370 eV Core-core repulsion = 16448.713843 eV Total energy + Delta-G solvation = -3107.536527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.080 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.98012 -38.92648 -37.08372 -36.10345 -34.35291 -33.10722 -32.31112 -30.17506 -29.10355 -27.37954 -25.31663 -24.43708 -23.05851 -21.72433 -21.20235 -18.95930 -17.72972 -17.18709 -16.54794 -16.45145 -15.49928 -15.45573 -14.88589 -14.60236 -14.37691 -14.11031 -13.69595 -13.29537 -13.12971 -13.12671 -12.60935 -12.36848 -12.17735 -11.80638 -11.74410 -11.67805 -11.34831 -11.14592 -10.80951 -10.54461 -10.51749 -10.06562 -9.52580 -8.99619 -8.44588 -7.74152 -6.65517 -6.56806 -4.15261 0.51065 1.14787 2.00900 2.24315 2.52261 3.01537 3.05793 3.08860 3.14088 3.18457 3.86615 3.92436 4.33487 4.39264 4.48793 4.65495 4.70250 4.95464 4.96998 5.07576 5.25067 5.34233 5.56679 5.73929 5.80871 5.94603 5.99825 6.01762 6.15985 6.21169 6.47801 6.75506 6.80501 6.92059 7.08706 7.20042 7.26895 7.53851 7.85748 7.93905 8.88047 9.52471 10.60270 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.004376 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.424463 B = 6396.676501 C = 7502.750960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.305 3.695 3 C -0.149 4.149 4 C -0.095 4.095 5 C -0.053 4.053 6 C -0.190 4.190 7 C 0.167 3.833 8 O -0.169 6.169 9 C -0.394 4.394 10 H 0.096 0.904 11 C 0.041 3.959 12 N -0.859 5.859 13 Si 0.942 3.058 14 H -0.265 1.265 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.204 4.204 18 C 0.113 3.887 19 N -0.370 5.370 20 C 0.100 3.900 21 C -0.186 4.186 22 C -0.082 4.082 23 C -0.125 4.125 24 C 0.149 3.851 25 H 0.119 0.881 26 H 0.139 0.861 27 H 0.271 0.729 28 H 0.123 0.877 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 10.474 8.209 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.007 4.007 3 C -0.161 4.161 4 C -0.099 4.099 5 C -0.072 4.072 6 C -0.209 4.209 7 C 0.111 3.889 8 O -0.071 6.071 9 C -0.470 4.470 10 H 0.113 0.887 11 C -0.164 4.164 12 N -0.493 5.493 13 Si 0.767 3.233 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.200 1.200 17 C -0.226 4.226 18 C 0.012 3.988 19 N -0.039 5.039 20 C -0.022 4.022 21 C -0.207 4.207 22 C -0.103 4.103 23 C -0.144 4.144 24 C 0.040 3.960 25 H 0.137 0.863 26 H 0.157 0.843 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.182 0.818 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.837 10.379 8.129 14.043 hybrid contribution 0.384 -0.705 -0.476 0.934 sum -4.453 9.674 7.653 13.114 Atomic orbital electron populations 1.81198 1.11649 1.10026 1.11235 1.24486 0.91162 0.92632 0.92381 1.15766 0.83815 1.04508 1.11999 1.18231 0.89835 0.99098 1.02728 1.19970 0.98677 0.93391 0.95176 1.21087 0.91916 1.03378 1.04549 1.18831 0.87697 0.91337 0.90990 1.83970 1.28724 1.37005 1.57450 1.21395 0.94658 1.01205 1.29747 0.88705 1.25289 0.94513 0.98863 0.97721 1.70077 0.98846 1.38008 1.42399 0.85622 0.79011 0.79749 0.78936 1.18947 1.20060 1.20045 1.18739 0.96604 1.01247 1.06053 1.17611 0.95148 0.90108 0.95888 1.41228 1.05571 1.23668 1.33464 1.21903 0.93346 0.92535 0.94421 1.20621 0.98017 0.99553 1.02511 1.21068 0.92075 0.98821 0.98307 1.20579 1.00746 0.95082 0.97961 1.18274 0.82414 0.96588 0.98683 0.86271 0.84301 0.91900 0.85948 0.81762 0.83554 0.84650 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.15 18.54 41.84 0.78 -7.37 16 2 C 0.31 5.06 15.82 -22.47 -0.36 4.70 16 3 C -0.15 -2.43 6.26 -103.51 -0.65 -3.08 16 4 C -0.09 -1.70 6.31 -104.94 -0.66 -2.36 16 5 C -0.05 -0.96 10.04 -39.65 -0.40 -1.35 16 6 C -0.19 -3.80 9.10 -39.76 -0.36 -4.16 16 7 C 0.17 3.70 6.64 -39.04 -0.26 3.44 16 8 O -0.17 -4.46 9.74 0.13 0.00 -4.46 16 9 C -0.39 -10.27 9.47 30.83 0.29 -9.97 16 10 H 0.10 2.26 5.17 -52.49 -0.27 1.99 16 11 C 0.04 1.07 5.49 -17.53 -0.10 0.97 16 12 N -0.86 -23.90 13.68 55.47 0.76 -23.14 16 13 Si 0.94 19.47 29.55 -169.99 -5.02 14.45 16 14 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 15 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 17 C -0.20 -3.97 10.00 -39.18 -0.39 -4.36 16 18 C 0.11 1.98 6.87 -83.64 -0.57 1.41 16 19 N -0.37 -5.45 2.96 -58.04 -0.17 -5.62 16 20 C 0.10 1.12 10.84 -16.46 -0.18 0.94 16 21 C -0.19 -1.62 9.98 -39.96 -0.40 -2.01 16 22 C -0.08 -0.72 10.09 -39.51 -0.40 -1.12 16 23 C -0.12 -1.39 10.00 -39.41 -0.39 -1.78 16 24 C 0.15 2.15 6.68 -83.73 -0.56 1.59 16 25 H 0.12 1.89 8.06 -52.48 -0.42 1.46 16 26 H 0.14 2.71 5.60 -52.48 -0.29 2.41 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -30.28 296.79 -6.81 -37.09 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -2.24 Total: 1.73 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -5.38 Total: -17.15 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 1.36 Total: -36.14 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: 0.00 Total: -4.46 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.28 -6.81 -37.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004053743.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.071 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds