Wall clock time and date at job start Mon Mar 30 2020 23:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.46975 * 126.91407 * 39.08519 * 3 2 1 5 5 C 1.39722 * 133.44260 * 359.95841 * 4 3 2 6 6 C 1.36503 * 119.86601 * 179.97438 * 5 4 3 7 7 C 1.39439 * 120.37142 * 359.97438 * 6 5 4 8 8 O 1.35713 * 119.73860 * 179.97438 * 7 6 5 9 9 C 1.34842 * 117.00276 * 354.44117 * 8 7 6 10 10 H 1.07996 * 120.00113 * 5.04470 * 9 8 7 11 11 C 1.38505 * 119.99619 * 185.05491 * 9 8 7 12 12 N 1.31643 * 120.00460 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99578 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47423 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47230 * 119.99986 * 13 11 9 16 16 H 1.48497 * 109.47278 * 239.99816 * 13 11 9 17 17 C 1.38502 * 120.52042 * 0.02562 * 7 6 5 18 18 C 1.39060 * 119.77198 * 359.97438 * 17 7 6 19 19 N 1.38589 * 132.23168 * 179.97438 * 18 17 7 20 20 C 1.36895 * 130.20774 * 359.97438 * 19 18 17 21 21 C 1.34955 * 120.91789 * 179.97438 * 20 19 18 22 22 C 1.40322 * 120.34678 * 0.02562 * 21 20 19 23 23 C 1.36260 * 119.42601 * 0.02562 * 22 21 20 24 24 C 1.37035 * 109.98548 * 179.73632 * 19 18 17 25 25 H 1.08003 * 120.06228 * 359.97438 * 5 4 3 26 26 H 1.08004 * 119.81360 * 180.02562 * 6 5 4 27 27 H 0.97003 * 120.00247 * 180.02562 * 12 11 9 28 28 H 1.08000 * 120.11649 * 180.02562 * 17 7 6 29 29 H 1.08004 * 119.54419 * 359.97438 * 20 19 18 30 30 H 1.07999 * 119.82144 * 180.02562 * 21 20 19 31 31 H 1.07996 * 120.28331 * 179.97438 * 22 21 20 32 32 H 1.08005 * 120.26882 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4511 -0.9111 -0.7409 5 6 3.2176 -1.9809 -1.6088 6 6 4.2710 -2.6540 -2.1569 7 6 5.5802 -2.2798 -1.8561 8 8 6.6179 -2.9584 -2.4079 9 6 6.3157 -4.0488 -3.1412 10 1 5.2834 -4.2999 -3.3354 11 6 7.3291 -4.8470 -3.6452 12 7 8.5875 -4.5409 -3.4089 13 14 6.9104 -6.3581 -4.6605 14 1 5.4353 -6.4803 -4.7811 15 1 7.5079 -6.2264 -6.0137 16 1 7.4551 -7.5685 -3.9946 17 6 5.8297 -1.2219 -0.9978 18 6 4.7669 -0.5265 -0.4316 19 7 4.7166 0.5485 0.4416 20 6 5.7293 1.2638 1.0218 21 6 5.4633 2.2911 1.8557 22 6 4.1364 2.6448 2.1440 23 6 3.1174 1.9416 1.5750 24 6 3.4126 0.8785 0.7036 25 1 2.2055 -2.2746 -1.8454 26 1 4.0895 -3.4806 -2.8280 27 1 9.2973 -5.0998 -3.7622 28 1 6.8463 -0.9373 -0.7697 29 1 6.7555 1.0025 0.8094 30 1 6.2761 2.8437 2.3034 31 1 3.9247 3.4668 2.8118 32 1 2.0910 2.2025 1.7870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004053743.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:30 Heat of formation + Delta-G solvation = 76.766392 kcal Electronic energy + Delta-G solvation = -19556.953430 eV Core-core repulsion = 16448.713843 eV Total energy + Delta-G solvation = -3108.239587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.18789 -40.49714 -38.42083 -37.41190 -35.62874 -34.34876 -34.02284 -31.56292 -30.35003 -28.68509 -27.12093 -25.59878 -24.19428 -23.10291 -22.56779 -20.47782 -19.07478 -18.69492 -17.84163 -17.60482 -16.77920 -16.67918 -16.10475 -16.05916 -15.78844 -15.41694 -15.29790 -14.69240 -14.60854 -14.40340 -13.91495 -13.76881 -13.50858 -13.22314 -13.10781 -12.84359 -12.66617 -12.54225 -12.24040 -12.07980 -11.66737 -11.27284 -11.23940 -10.72306 -9.86108 -9.18234 -8.45040 -7.94800 -6.10847 -0.55392 0.10130 0.62945 0.79067 1.32936 1.41428 1.46127 1.56977 1.74084 2.12740 2.20081 2.70143 2.87384 3.09314 3.14375 3.34779 3.50048 3.78699 3.84393 4.02625 4.13201 4.23964 4.29925 4.42405 4.53275 4.56922 4.85842 4.90563 5.07562 5.18265 5.21219 5.31084 5.41690 5.50786 5.58512 5.74059 5.97971 6.01849 6.17646 6.68919 7.00148 7.75759 8.77698 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.024962 B = 0.004376 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.424463 B = 6396.676501 C = 7502.750960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.321 3.679 3 C -0.197 4.197 4 C -0.089 4.089 5 C -0.056 4.056 6 C -0.198 4.198 7 C 0.128 3.872 8 O -0.221 6.221 9 C -0.411 4.411 10 H 0.106 0.894 11 C -0.019 4.019 12 N -0.918 5.918 13 Si 1.015 2.985 14 H -0.251 1.251 15 H -0.270 1.270 16 H -0.270 1.270 17 C -0.188 4.188 18 C 0.096 3.904 19 N -0.369 5.369 20 C 0.068 3.932 21 C -0.156 4.156 22 C -0.045 4.045 23 C -0.151 4.151 24 C 0.176 3.824 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.272 0.728 28 H 0.129 0.871 29 H 0.182 0.818 30 H 0.193 0.807 31 H 0.183 0.817 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 13.475 10.711 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C 0.010 3.990 3 C -0.209 4.209 4 C -0.093 4.093 5 C -0.074 4.074 6 C -0.217 4.217 7 C 0.076 3.924 8 O -0.127 6.127 9 C -0.487 4.487 10 H 0.123 0.877 11 C -0.217 4.217 12 N -0.556 5.556 13 Si 0.835 3.165 14 H -0.174 1.174 15 H -0.195 1.195 16 H -0.196 1.196 17 C -0.210 4.210 18 C -0.005 4.005 19 N -0.037 5.037 20 C -0.053 4.053 21 C -0.176 4.176 22 C -0.066 4.066 23 C -0.170 4.170 24 C 0.065 3.935 25 H 0.156 0.844 26 H 0.154 0.846 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.199 0.801 30 H 0.210 0.790 31 H 0.201 0.799 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.708 13.421 10.661 18.065 hybrid contribution 0.582 -1.047 -0.794 1.437 sum -5.126 12.374 9.867 16.636 Atomic orbital electron populations 1.81203 1.12169 1.11129 1.12580 1.24426 0.91019 0.91918 0.91619 1.15625 0.83733 1.06487 1.15031 1.18541 0.90751 0.98463 1.01542 1.20137 0.98962 0.93349 0.94999 1.21069 0.91715 1.03815 1.05085 1.19236 0.88027 0.92468 0.92631 1.83933 1.30474 1.38370 1.59929 1.21858 0.95400 1.01616 1.29854 0.87703 1.26466 0.94236 1.01986 0.98982 1.70210 1.00052 1.40073 1.45281 0.84571 0.79434 0.75466 0.77065 1.17447 1.19535 1.19552 1.18882 0.97581 1.00011 1.04512 1.17467 0.94375 0.91517 0.97147 1.41408 1.06758 1.22897 1.32644 1.22585 0.93535 0.93538 0.95602 1.21316 0.99542 0.97311 0.99446 1.21746 0.91125 0.97865 0.95842 1.20917 1.02754 0.94873 0.98420 1.18767 0.81775 0.95902 0.97011 0.84397 0.84641 0.91876 0.85330 0.80130 0.79026 0.79936 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.04 18.54 19.00 0.35 -16.69 16 2 C 0.32 10.41 15.82 88.33 1.40 11.81 16 3 C -0.20 -6.25 6.26 -19.14 -0.12 -6.37 16 4 C -0.09 -3.19 6.31 -20.07 -0.13 -3.31 16 5 C -0.06 -2.06 10.04 22.22 0.22 -1.83 16 6 C -0.20 -8.32 9.10 22.15 0.20 -8.12 16 7 C 0.13 6.03 6.64 22.62 0.15 6.18 16 8 O -0.22 -12.52 9.74 -22.45 -0.22 -12.74 16 9 C -0.41 -22.77 9.47 67.88 0.64 -22.13 16 10 H 0.11 5.29 5.17 -2.91 -0.02 5.28 16 11 C -0.02 -1.03 5.49 84.78 0.47 -0.57 16 12 N -0.92 -54.19 13.68 21.59 0.30 -53.90 16 13 Si 1.01 41.47 29.55 68.60 2.03 43.49 16 14 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 15 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 16 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 17 C -0.19 -7.56 10.00 22.53 0.23 -7.33 16 18 C 0.10 3.34 6.87 38.83 0.27 3.61 16 19 N -0.37 -9.99 2.96 -337.55 -1.00 -10.99 16 20 C 0.07 1.24 10.84 83.15 0.90 2.14 16 21 C -0.16 -1.65 9.98 22.02 0.22 -1.43 16 22 C -0.04 -0.46 10.09 22.32 0.23 -0.24 16 23 C -0.15 -2.62 10.00 22.38 0.22 -2.40 16 24 C 0.18 4.61 6.68 39.50 0.26 4.87 16 25 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 26 H 0.14 5.63 5.60 -2.91 -0.02 5.62 16 27 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 31 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 32 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -72.66 296.79 7.80 -64.86 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.18 Total: 11.08 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 5.16 Total: -25.12 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -0.35 Total: -81.58 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.22 Total: -12.74 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -72.66 7.80 -64.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004053743.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.625 kcal (2) G-P(sol) polarization free energy of solvation -72.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds