Wall clock time and date at job start Tue Mar 31 2020 00:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99681 * 2 1 4 4 H 1.48499 * 109.47283 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99716 * 3 2 1 6 6 H 1.48498 * 109.47004 * 149.99733 * 3 2 1 7 7 C 1.37877 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00103 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99835 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46935 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46748 * 180.02562 * 10 9 7 12 12 N 1.40280 * 126.57162 * 270.28269 * 11 10 9 13 13 C 1.30156 * 107.74888 * 180.10974 * 12 11 10 14 14 C 1.47885 * 125.46733 * 179.91302 * 13 12 11 15 15 C 1.39546 * 120.11626 * 179.71713 * 14 13 12 16 16 C 1.37925 * 119.88203 * 179.97438 * 15 14 13 17 17 C 1.38582 * 120.11232 * 359.97438 * 16 15 14 18 18 F 1.35103 * 119.87996 * 179.97438 * 17 16 15 19 19 C 1.38574 * 120.23582 * 0.02562 * 17 16 15 20 20 C 1.37915 * 120.11731 * 359.97438 * 19 17 16 21 21 O 1.35095 * 109.07052 * 359.64936 * 13 12 11 22 22 C 1.34320 * 108.86027 * 0.22546 * 21 13 12 23 23 O 1.21694 * 126.26353 * 180.02562 * 22 21 13 24 24 H 0.96997 * 120.00018 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46763 * 59.99757 * 9 7 2 26 26 H 1.09003 * 109.46858 * 300.00101 * 9 7 2 27 27 H 1.08999 * 109.47173 * 59.99813 * 10 9 7 28 28 H 1.08998 * 109.46864 * 299.99519 * 10 9 7 29 29 H 1.08000 * 120.06038 * 359.96017 * 15 14 13 30 30 H 1.07999 * 119.93728 * 179.72197 * 16 15 14 31 31 H 1.08005 * 119.94605 * 179.97438 * 19 17 16 32 32 H 1.08002 * 120.06346 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 7 5.4867 -2.6363 0.0022 12 7 6.3234 -2.6303 -1.1237 13 6 7.5550 -2.6348 -0.7028 14 6 8.7565 -2.6328 -1.5650 15 6 10.0291 -2.6322 -0.9926 16 6 11.1464 -2.6309 -1.8013 17 6 11.0067 -2.6307 -3.1800 18 9 12.1043 -2.6289 -3.9677 19 6 9.7453 -2.6313 -3.7536 20 6 8.6215 -2.6326 -2.9540 21 8 7.5598 -2.6357 0.6481 22 6 6.2902 -2.6366 1.0868 23 8 5.9304 -2.6372 2.2493 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6798 0.8912 26 1 3.8753 -0.6803 -0.8889 27 1 3.6587 -3.1501 -0.8892 28 1 3.6581 -3.1504 0.8908 29 1 10.1390 -2.6325 0.0818 30 1 12.1318 -2.6258 -1.3592 31 1 9.6418 -2.6307 -4.8287 32 1 7.6388 -2.6335 -3.4020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010423061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:22 Heat of formation + Delta-G solvation = -25.234373 kcal Electronic energy + Delta-G solvation = -20191.225469 eV Core-core repulsion = 16647.793573 eV Total energy + Delta-G solvation = -3543.431897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.36234 -43.25157 -39.43880 -37.73317 -36.34681 -33.74806 -32.66125 -31.71942 -31.25356 -29.16219 -25.92834 -24.26461 -23.66837 -22.50966 -21.83803 -20.75064 -18.39374 -17.86853 -17.49320 -16.97773 -16.73842 -16.70749 -16.03645 -15.81487 -15.07221 -14.68872 -14.35363 -14.07641 -13.67982 -13.62287 -13.37523 -13.11360 -13.01730 -12.60165 -12.37445 -12.04103 -11.55778 -11.47191 -11.18377 -10.76608 -10.50276 -10.25700 -9.94432 -9.65365 -9.52841 -9.42419 -8.66078 -8.39298 -6.16888 -4.18031 0.13589 0.73731 1.79146 1.82370 2.41586 2.48880 3.15554 3.24396 3.32484 3.37023 3.73134 4.01035 4.33178 4.35515 4.36727 4.66769 4.73497 4.89183 5.17123 5.26305 5.39810 5.44658 5.59922 5.68270 5.76731 5.93227 5.95714 6.11123 6.26134 6.28532 7.02200 7.07999 7.51119 7.56626 7.75907 8.33377 8.83707 9.43529 10.95562 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.024619 B = 0.003786 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.079026 B = 7393.122212 C = 7951.239293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.078 0.922 9 C -0.028 4.028 10 C 0.161 3.839 11 N -0.437 5.437 12 N -0.241 5.241 13 C 0.260 3.740 14 C -0.032 4.032 15 C -0.050 4.050 16 C -0.155 4.155 17 C 0.121 3.879 18 F -0.134 7.134 19 C -0.154 4.154 20 C -0.039 4.039 21 O -0.274 6.274 22 C 0.601 3.399 23 O -0.481 6.481 24 H 0.266 0.734 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.916 -6.122 -7.235 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.096 0.904 9 C -0.066 4.066 10 C 0.044 3.956 11 N -0.269 5.269 12 N -0.071 5.071 13 C 0.037 3.963 14 C -0.034 4.034 15 C -0.070 4.070 16 C -0.174 4.174 17 C 0.100 3.900 18 F -0.113 7.113 19 C -0.172 4.172 20 C -0.059 4.059 21 O -0.171 6.171 22 C 0.352 3.648 23 O -0.362 6.362 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 22.016 -6.010 -7.108 23.903 hybrid contribution 0.834 1.000 0.526 1.404 sum 22.850 -5.010 -6.582 24.301 Atomic orbital electron populations 1.69884 1.06213 1.27228 1.49989 1.24922 0.94724 0.99099 0.94061 0.86795 0.80411 0.83608 0.78646 1.20052 1.21020 1.19169 1.20804 0.88055 0.95055 1.52474 0.90375 1.20001 0.97980 0.91059 0.97546 1.22099 0.67296 1.01944 1.04257 1.50715 1.08706 1.66630 1.00855 1.77375 0.98503 1.18999 1.12175 1.23530 0.93534 1.00043 0.79200 1.17292 0.87609 1.07455 0.91089 1.21140 0.89896 0.94799 1.01140 1.21075 1.00452 1.04380 0.91475 1.17946 0.83042 1.00308 0.88656 1.91535 1.52170 1.93460 1.74120 1.21101 0.90290 1.04195 1.01641 1.21097 0.99980 0.94013 0.90787 1.85099 1.31460 1.78970 1.21597 1.19343 0.78311 0.80164 0.86964 1.91213 1.74366 1.55905 1.14686 0.92403 0.95829 0.95988 0.88499 0.88325 0.83555 0.83674 0.83483 0.82996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.53 -14.51 9.66 -34.44 -0.33 -14.84 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.03 -0.65 4.37 -27.88 -0.12 -0.77 16 10 C 0.16 3.16 6.35 -4.04 -0.03 3.13 16 11 N -0.44 -8.09 3.64 -65.27 -0.24 -8.32 16 12 N -0.24 -3.84 12.16 31.96 0.39 -3.45 16 13 C 0.26 3.57 7.94 -14.31 -0.11 3.46 16 14 C -0.03 -0.32 5.87 -104.97 -0.62 -0.94 16 15 C -0.05 -0.40 9.71 -39.21 -0.38 -0.78 16 16 C -0.16 -1.07 10.01 -39.57 -0.40 -1.46 16 17 C 0.12 0.92 7.30 -39.33 -0.29 0.63 16 18 F -0.13 -1.11 17.26 2.25 0.04 -1.08 16 19 C -0.15 -1.10 10.01 -39.58 -0.40 -1.49 16 20 C -0.04 -0.33 9.68 -39.21 -0.38 -0.71 16 21 O -0.27 -4.31 10.43 -20.76 -0.22 -4.52 16 22 C 0.60 11.39 9.24 54.15 0.50 11.89 16 23 O -0.48 -10.44 17.91 -19.01 -0.34 -10.78 16 24 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 26 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.10 1.91 8.12 -51.93 -0.42 1.49 16 29 H 0.15 1.03 7.89 -52.49 -0.41 0.61 16 30 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.15 1.22 7.82 -52.49 -0.41 0.81 16 LS Contribution 298.33 15.07 4.50 4.50 Total: -1.00 -32.16 298.33 -5.28 -37.44 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: -2.87 Total: -4.72 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.65 Total: 0.15 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.92 Total: -37.99 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.56 Total: -15.31 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.16 -5.28 -37.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010423061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.207 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds