Wall clock time and date at job start Tue Mar 31 2020 00:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99681 * 2 1 4 4 H 1.48499 * 109.47283 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99716 * 3 2 1 6 6 H 1.48498 * 109.47004 * 149.99733 * 3 2 1 7 7 C 1.37877 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00103 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99835 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46935 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46748 * 180.02562 * 10 9 7 12 12 N 1.40280 * 126.57162 * 270.28269 * 11 10 9 13 13 C 1.30156 * 107.74888 * 180.10974 * 12 11 10 14 14 C 1.47885 * 125.46733 * 179.91302 * 13 12 11 15 15 C 1.39546 * 120.11626 * 179.71713 * 14 13 12 16 16 C 1.37925 * 119.88203 * 179.97438 * 15 14 13 17 17 C 1.38582 * 120.11232 * 359.97438 * 16 15 14 18 18 F 1.35103 * 119.87996 * 179.97438 * 17 16 15 19 19 C 1.38574 * 120.23582 * 0.02562 * 17 16 15 20 20 C 1.37915 * 120.11731 * 359.97438 * 19 17 16 21 21 O 1.35095 * 109.07052 * 359.64936 * 13 12 11 22 22 C 1.34320 * 108.86027 * 0.22546 * 21 13 12 23 23 O 1.21694 * 126.26353 * 180.02562 * 22 21 13 24 24 H 0.96997 * 120.00018 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46763 * 59.99757 * 9 7 2 26 26 H 1.09003 * 109.46858 * 300.00101 * 9 7 2 27 27 H 1.08999 * 109.47173 * 59.99813 * 10 9 7 28 28 H 1.08998 * 109.46864 * 299.99519 * 10 9 7 29 29 H 1.08000 * 120.06038 * 359.96017 * 15 14 13 30 30 H 1.07999 * 119.93728 * 179.72197 * 16 15 14 31 31 H 1.08005 * 119.94605 * 179.97438 * 19 17 16 32 32 H 1.08002 * 120.06346 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 7 5.4867 -2.6363 0.0022 12 7 6.3234 -2.6303 -1.1237 13 6 7.5550 -2.6348 -0.7028 14 6 8.7565 -2.6328 -1.5650 15 6 10.0291 -2.6322 -0.9926 16 6 11.1464 -2.6309 -1.8013 17 6 11.0067 -2.6307 -3.1800 18 9 12.1043 -2.6289 -3.9677 19 6 9.7453 -2.6313 -3.7536 20 6 8.6215 -2.6326 -2.9540 21 8 7.5598 -2.6357 0.6481 22 6 6.2902 -2.6366 1.0868 23 8 5.9304 -2.6372 2.2493 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6798 0.8912 26 1 3.8753 -0.6803 -0.8889 27 1 3.6587 -3.1501 -0.8892 28 1 3.6581 -3.1504 0.8908 29 1 10.1390 -2.6325 0.0818 30 1 12.1318 -2.6258 -1.3592 31 1 9.6418 -2.6307 -4.8287 32 1 7.6388 -2.6335 -3.4020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010423061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:20 Heat of formation + Delta-G solvation = -46.648841 kcal Electronic energy + Delta-G solvation = -20192.154070 eV Core-core repulsion = 16647.793573 eV Total energy + Delta-G solvation = -3544.360498 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.99054 -44.57090 -40.16861 -39.16802 -37.78938 -35.54412 -34.10544 -32.74286 -32.29700 -30.48974 -27.57469 -25.42062 -24.57365 -23.76317 -22.95627 -22.31684 -19.58262 -18.94873 -18.81763 -18.51643 -17.98620 -17.70455 -16.94576 -16.65773 -16.53805 -16.31402 -15.38815 -15.12464 -15.01781 -14.78606 -14.63976 -14.28163 -14.21212 -13.85490 -13.51199 -13.30673 -13.14290 -13.04239 -12.37442 -12.20739 -12.09292 -12.04296 -11.83670 -11.57597 -10.83998 -10.60359 -10.23358 -9.50478 -8.36424 -6.42109 -0.66652 0.16004 0.42351 0.80987 0.95260 1.29644 1.32856 1.33448 1.42987 2.29138 2.48874 2.88332 2.98441 3.11918 3.50466 3.69220 3.80114 4.08769 4.13184 4.16157 4.23863 4.37755 4.53950 4.61172 4.75696 4.89233 5.00560 5.06971 5.14103 5.16509 5.24642 5.49420 5.68929 6.12580 6.15098 6.34410 6.64236 7.22895 8.79162 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.024619 B = 0.003786 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.079026 B = 7393.122212 C = 7951.239293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.018 3.982 3 Si 0.941 3.059 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.053 0.947 9 C -0.019 4.019 10 C 0.172 3.828 11 N -0.446 5.446 12 N -0.264 5.264 13 C 0.286 3.714 14 C -0.058 4.058 15 C -0.043 4.043 16 C -0.148 4.148 17 C 0.123 3.877 18 F -0.136 7.136 19 C -0.149 4.149 20 C -0.035 4.035 21 O -0.266 6.266 22 C 0.598 3.402 23 O -0.517 6.517 24 H 0.270 0.730 25 H 0.009 0.991 26 H 0.026 0.974 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.157 0.843 30 H 0.170 0.830 31 H 0.169 0.831 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.856 -5.686 -8.530 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.570 4.570 8 H 0.071 0.929 9 C -0.058 4.058 10 C 0.055 3.945 11 N -0.276 5.276 12 N -0.093 5.093 13 C 0.064 3.936 14 C -0.060 4.060 15 C -0.063 4.063 16 C -0.167 4.167 17 C 0.102 3.898 18 F -0.115 7.115 19 C -0.168 4.168 20 C -0.055 4.055 21 O -0.162 6.162 22 C 0.350 3.650 23 O -0.401 6.401 24 H 0.079 0.921 25 H 0.027 0.973 26 H 0.045 0.955 27 H 0.131 0.869 28 H 0.114 0.886 29 H 0.174 0.826 30 H 0.188 0.812 31 H 0.187 0.813 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 24.985 -5.585 -8.439 26.956 hybrid contribution 0.110 0.783 0.820 1.139 sum 25.095 -4.803 -7.620 26.662 Atomic orbital electron populations 1.70008 1.07872 1.28377 1.51583 1.25788 0.95519 1.02893 0.93882 0.85796 0.79025 0.79257 0.79403 1.18469 1.20435 1.18868 1.21099 0.90199 0.94163 1.51510 0.92921 1.19829 0.95416 0.93691 0.96828 1.21751 0.68386 0.99383 1.05019 1.50480 1.08449 1.67001 1.01671 1.77437 0.98859 1.22232 1.10747 1.24384 0.94175 0.96639 0.78426 1.17440 0.86824 1.10543 0.91229 1.21274 0.89301 0.93864 1.01883 1.21301 1.01167 1.03113 0.91104 1.18143 0.83089 0.99507 0.89022 1.91541 1.52311 1.93364 1.74243 1.21289 0.89597 1.03207 1.02657 1.21160 1.00667 0.93516 0.90170 1.85099 1.29677 1.78645 1.22806 1.19360 0.79080 0.79900 0.86630 1.91175 1.75364 1.57546 1.16022 0.92112 0.97254 0.95537 0.86895 0.88598 0.82554 0.81212 0.81346 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 2 C 0.02 1.03 5.47 84.65 0.46 1.49 16 3 Si 0.94 44.58 27.47 68.60 1.88 46.47 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.26 -12.30 6.54 99.48 0.65 -11.65 16 7 C -0.53 -29.83 9.66 25.60 0.25 -29.58 16 8 H 0.05 3.14 7.99 -2.91 -0.02 3.12 16 9 C -0.02 -0.91 4.37 29.85 0.13 -0.78 16 10 C 0.17 6.78 6.35 86.38 0.55 7.33 16 11 N -0.45 -16.30 3.64 -590.68 -2.15 -18.45 16 12 N -0.26 -8.12 12.16 -167.02 -2.03 -10.15 16 13 C 0.29 7.41 7.94 87.50 0.69 8.11 16 14 C -0.06 -1.03 5.87 -20.09 -0.12 -1.15 16 15 C -0.04 -0.57 9.71 22.51 0.22 -0.35 16 16 C -0.15 -1.52 10.01 22.28 0.22 -1.30 16 17 C 0.12 1.46 7.30 22.43 0.16 1.62 16 18 F -0.14 -1.82 17.26 44.97 0.78 -1.04 16 19 C -0.15 -1.66 10.01 22.27 0.22 -1.44 16 20 C -0.04 -0.51 9.68 22.51 0.22 -0.29 16 21 O -0.27 -8.06 10.43 12.52 0.13 -7.93 16 22 C 0.60 22.57 9.24 129.76 1.20 23.77 16 23 O -0.52 -22.75 17.91 18.81 0.34 -22.41 16 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.01 0.46 7.20 -2.38 -0.02 0.44 16 26 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 27 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 28 H 0.10 3.79 8.12 -2.39 -0.02 3.77 16 29 H 0.16 1.74 7.89 -2.91 -0.02 1.71 16 30 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 31 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.15 2.16 7.82 -2.91 -0.02 2.14 16 Total: -1.00 -69.60 298.33 4.56 -65.04 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: 1.10 Total: -1.69 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 4.21 Total: 7.44 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -3.88 Total: -85.87 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: 0.47 Total: -30.34 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.78 Total: -1.04 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Total: -69.60 4.56 -65.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010423061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.387 kcal (2) G-P(sol) polarization free energy of solvation -69.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds