Wall clock time and date at job start Tue Mar 31 2020 01:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.53006 * 109.46740 * 240.00292 * 2 1 3 5 5 C 1.50693 * 109.47371 * 294.25248 * 4 2 1 6 6 C 1.33387 * 122.11688 * 98.93598 * 5 4 2 7 7 S 1.75529 * 110.71199 * 179.97438 * 6 5 4 8 8 C 1.76003 * 91.53854 * 0.02562 * 7 6 5 9 9 N 1.33238 * 130.90041 * 179.97438 * 8 7 6 10 10 C 1.32498 * 122.28222 * 179.25505 * 9 8 7 11 11 C 1.39473 * 118.98889 * 180.27377 * 10 9 8 12 12 H 1.07994 * 119.99915 * 180.45613 * 11 10 9 13 13 C 1.40396 * 119.99745 * 0.45920 * 11 10 9 14 14 N 1.30552 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99645 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47310 * 89.99771 * 15 13 11 17 17 H 1.48504 * 109.46868 * 209.99968 * 15 13 11 18 18 H 1.48505 * 109.47454 * 329.99535 * 15 13 11 19 19 N 1.37757 * 122.02482 * 0.74642 * 10 9 8 20 20 H 0.96994 * 119.95731 * 179.51054 * 19 10 9 21 21 C 1.34868 * 120.08251 * 359.53152 * 19 10 9 22 22 O 1.21775 * 120.86267 * 180.02562 * 21 19 10 23 23 C 1.39343 * 122.11800 * 278.65238 * 5 4 2 24 24 H 1.08993 * 109.47138 * 65.51227 * 1 2 3 25 25 H 1.08997 * 109.47207 * 185.51309 * 1 2 3 26 26 H 1.09003 * 109.47144 * 305.51076 * 1 2 3 27 27 H 1.09000 * 109.47453 * 120.00629 * 2 1 3 28 28 H 1.08995 * 109.46520 * 60.00637 * 3 2 1 29 29 H 1.08999 * 109.47321 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47533 * 300.00226 * 3 2 1 31 31 H 1.08993 * 109.47266 * 54.25845 * 4 2 1 32 32 H 1.09002 * 109.46743 * 174.25426 * 4 2 1 33 33 H 1.07997 * 124.64179 * 0.02562 * 6 5 4 34 34 H 0.97001 * 119.99362 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6571 -2.1771 -1.1804 6 6 0.5954 -2.6625 -1.8256 7 16 0.4296 -4.3863 -1.5393 8 6 1.8590 -4.4014 -0.5125 9 7 2.4501 -5.3979 0.1454 10 6 3.5455 -5.2169 0.8686 11 6 4.1106 -6.3102 1.5247 12 1 4.9991 -6.1798 2.1245 13 6 3.5244 -7.5803 1.4052 14 7 2.4500 -7.7378 0.6804 15 14 4.2817 -9.0448 2.2834 16 1 3.6871 -9.1713 3.6382 17 1 4.0117 -10.2814 1.5068 18 1 5.7485 -8.8460 2.4031 19 7 4.1379 -3.9802 1.0002 20 1 4.9355 -3.8805 1.5430 21 6 3.6100 -2.9078 0.3755 22 8 4.1222 -1.8081 0.4816 23 6 2.3932 -3.1025 -0.4432 24 1 -0.3633 0.4259 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 -0.3633 0.5969 0.8365 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.5951 -0.2702 -2.1363 32 1 3.1251 -0.6330 -1.3023 33 1 -0.0704 -2.0755 -2.4407 34 1 2.0448 -8.6153 0.5982 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020282799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:07 Heat of formation + Delta-G solvation = -17.682865 kcal Electronic energy + Delta-G solvation = -19382.352802 eV Core-core repulsion = 16405.461539 eV Total energy + Delta-G solvation = -2976.891263 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80834 -37.11487 -36.40493 -34.52771 -33.61929 -31.82175 -29.08892 -26.81445 -26.78576 -25.98575 -23.07717 -22.27484 -20.11039 -19.06200 -18.16317 -17.34671 -16.42577 -15.89720 -15.40446 -14.86414 -14.51536 -14.18318 -13.66719 -13.52072 -13.23904 -12.69313 -12.34387 -12.13671 -11.95330 -11.90234 -11.68959 -11.50523 -11.34534 -11.22910 -11.11594 -10.70507 -10.65448 -10.34005 -10.10636 -9.75196 -9.58601 -9.01570 -8.93661 -8.17156 -7.47479 -7.02667 -6.93372 -5.24757 1.79674 2.48039 2.76191 2.79265 2.84582 2.95820 3.14948 3.49762 3.53303 4.15096 4.30983 5.20021 5.38582 5.44707 5.47497 5.74449 5.91240 5.94782 6.05513 6.08911 6.17250 6.20668 6.32794 6.37233 6.49768 6.51223 6.63339 6.74469 6.80670 6.90241 6.99832 7.33272 7.40555 7.54248 7.83565 7.96751 8.17964 9.11927 9.56105 9.70156 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.026065 B = 0.005674 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.992626 B = 4933.964396 C = 5723.720876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.054 4.054 5 C 0.020 3.980 6 C -0.319 4.319 7 S 0.076 5.924 8 C 0.184 3.816 9 N -0.525 5.525 10 C 0.447 3.553 11 C -0.387 4.387 12 H 0.102 0.898 13 C 0.062 3.938 14 N -0.663 5.663 15 Si 0.927 3.073 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.256 1.256 19 N -0.676 5.676 20 H 0.399 0.601 21 C 0.574 3.426 22 O -0.572 6.572 23 C -0.375 4.375 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 2.764 -0.040 3.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.199 4.199 4 C -0.094 4.094 5 C 0.009 3.991 6 C -0.453 4.453 7 S 0.332 5.668 8 C -0.068 4.068 9 N -0.254 5.254 10 C 0.218 3.782 11 C -0.422 4.422 12 H 0.120 0.880 13 C -0.171 4.171 14 N -0.282 5.282 15 Si 0.749 3.251 16 H -0.187 1.187 17 H -0.194 1.194 18 H -0.180 1.180 19 N -0.319 5.319 20 H 0.236 0.764 21 C 0.370 3.630 22 O -0.454 6.454 23 C -0.390 4.390 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.163 0.837 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.726 1.500 -0.752 3.201 hybrid contribution 1.819 1.074 1.028 2.350 sum -0.907 2.574 0.276 2.743 Atomic orbital electron populations 1.21857 0.95908 1.01926 1.00447 1.20910 0.94957 0.95170 0.99078 1.21796 1.01168 0.96275 1.00613 1.20382 1.01551 0.90690 0.96751 1.17927 0.92651 0.94746 0.93755 1.24359 1.07331 0.96926 1.16716 1.83545 1.27169 1.06555 1.49519 1.23824 0.96320 0.91737 0.94934 1.68699 1.11417 1.26834 1.18428 1.19469 0.86792 0.82395 0.89536 1.19437 1.09443 0.90902 1.22444 0.88031 1.26135 0.94820 1.00705 0.95431 1.70062 1.11708 1.25137 1.21243 0.85970 0.80556 0.78770 0.79777 1.18722 1.19368 1.17977 1.44717 1.29695 1.09562 1.47919 0.76425 1.17879 0.83538 0.83000 0.78628 1.90705 1.64632 1.24428 1.65676 1.19904 1.05474 0.94721 1.18944 0.93336 0.92173 0.93702 0.90925 0.93395 0.92652 0.93361 0.92653 0.90514 0.83662 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.80 37.16 0.33 -1.90 16 2 C -0.08 -1.43 2.83 -90.62 -0.26 -1.69 16 3 C -0.14 -2.08 9.19 37.16 0.34 -1.73 16 4 C -0.05 -1.01 4.30 -27.88 -0.12 -1.13 16 5 C 0.02 0.44 4.41 -105.91 -0.47 -0.03 16 6 C -0.32 -6.31 10.07 29.04 0.29 -6.01 16 7 S 0.08 1.59 23.29 -107.50 -2.50 -0.91 16 8 C 0.18 4.54 7.70 -16.05 -0.12 4.42 16 9 N -0.53 -13.47 7.69 -10.98 -0.08 -13.56 16 10 C 0.45 10.74 7.40 -156.01 -1.15 9.59 16 11 C -0.39 -8.43 9.19 -38.31 -0.35 -8.78 16 12 H 0.10 1.92 7.85 -52.49 -0.41 1.51 16 13 C 0.06 1.30 5.50 -17.28 -0.10 1.21 16 14 N -0.66 -15.09 11.37 55.57 0.63 -14.46 16 15 Si 0.93 15.16 29.56 -169.99 -5.03 10.14 16 16 H -0.26 -4.29 7.11 56.52 0.40 -3.89 16 17 H -0.27 -4.38 7.11 56.52 0.40 -3.97 16 18 H -0.26 -4.09 7.11 56.52 0.40 -3.69 16 19 N -0.68 -15.18 5.33 -12.45 -0.07 -15.25 16 20 H 0.40 7.74 8.76 -40.82 -0.36 7.38 16 21 C 0.57 13.93 8.00 -12.24 -0.10 13.83 16 22 O -0.57 -14.21 15.59 5.12 0.08 -14.13 16 23 C -0.38 -9.06 6.06 -104.62 -0.63 -9.69 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.03 7.10 -51.93 -0.37 0.66 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.49 7.68 -51.93 -0.40 1.09 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.91 8.06 -51.93 -0.42 0.50 16 32 H 0.08 1.58 6.98 -51.93 -0.36 1.22 16 33 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 34 H 0.29 5.81 8.29 -40.82 -0.34 5.47 16 LS Contribution 301.11 15.07 4.54 4.54 Total: -1.00 -27.19 301.11 -8.76 -35.95 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -3.99 Total: 9.61 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.34 Total: -1.93 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.48 Total: -43.26 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.08 Total: -14.13 kcal Atomic # 14 Polarization: 15.16 SS G_CDS: -5.03 Total: 10.14 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.50 Total: -0.91 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.19 -8.76 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020282799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.268 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds