Wall clock time and date at job start Tue Mar 31 2020 01:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.53006 * 109.46740 * 240.00292 * 2 1 3 5 5 C 1.50693 * 109.47371 * 294.25248 * 4 2 1 6 6 C 1.33387 * 122.11688 * 98.93598 * 5 4 2 7 7 S 1.75529 * 110.71199 * 179.97438 * 6 5 4 8 8 C 1.76003 * 91.53854 * 0.02562 * 7 6 5 9 9 N 1.33238 * 130.90041 * 179.97438 * 8 7 6 10 10 C 1.32498 * 122.28222 * 179.25505 * 9 8 7 11 11 C 1.39473 * 118.98889 * 180.27377 * 10 9 8 12 12 H 1.07994 * 119.99915 * 180.45613 * 11 10 9 13 13 C 1.40396 * 119.99745 * 0.45920 * 11 10 9 14 14 N 1.30552 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99645 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47310 * 89.99771 * 15 13 11 17 17 H 1.48504 * 109.46868 * 209.99968 * 15 13 11 18 18 H 1.48505 * 109.47454 * 329.99535 * 15 13 11 19 19 N 1.37757 * 122.02482 * 0.74642 * 10 9 8 20 20 H 0.96994 * 119.95731 * 179.51054 * 19 10 9 21 21 C 1.34868 * 120.08251 * 359.53152 * 19 10 9 22 22 O 1.21775 * 120.86267 * 180.02562 * 21 19 10 23 23 C 1.39343 * 122.11800 * 278.65238 * 5 4 2 24 24 H 1.08993 * 109.47138 * 65.51227 * 1 2 3 25 25 H 1.08997 * 109.47207 * 185.51309 * 1 2 3 26 26 H 1.09003 * 109.47144 * 305.51076 * 1 2 3 27 27 H 1.09000 * 109.47453 * 120.00629 * 2 1 3 28 28 H 1.08995 * 109.46520 * 60.00637 * 3 2 1 29 29 H 1.08999 * 109.47321 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47533 * 300.00226 * 3 2 1 31 31 H 1.08993 * 109.47266 * 54.25845 * 4 2 1 32 32 H 1.09002 * 109.46743 * 174.25426 * 4 2 1 33 33 H 1.07997 * 124.64179 * 0.02562 * 6 5 4 34 34 H 0.97001 * 119.99362 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6571 -2.1771 -1.1804 6 6 0.5954 -2.6625 -1.8256 7 16 0.4296 -4.3863 -1.5393 8 6 1.8590 -4.4014 -0.5125 9 7 2.4501 -5.3979 0.1454 10 6 3.5455 -5.2169 0.8686 11 6 4.1106 -6.3102 1.5247 12 1 4.9991 -6.1798 2.1245 13 6 3.5244 -7.5803 1.4052 14 7 2.4500 -7.7378 0.6804 15 14 4.2817 -9.0448 2.2834 16 1 3.6871 -9.1713 3.6382 17 1 4.0117 -10.2814 1.5068 18 1 5.7485 -8.8460 2.4031 19 7 4.1379 -3.9802 1.0002 20 1 4.9355 -3.8805 1.5430 21 6 3.6100 -2.9078 0.3755 22 8 4.1222 -1.8081 0.4816 23 6 2.3932 -3.1025 -0.4432 24 1 -0.3633 0.4259 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 -0.3633 0.5969 0.8365 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.5951 -0.2702 -2.1363 32 1 3.1251 -0.6330 -1.3023 33 1 -0.0704 -2.0755 -2.4407 34 1 2.0448 -8.6153 0.5982 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020282799.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:05 Heat of formation + Delta-G solvation = -32.690207 kcal Electronic energy + Delta-G solvation = -19383.003569 eV Core-core repulsion = 16405.461539 eV Total energy + Delta-G solvation = -2977.542030 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.58633 -38.66732 -38.23473 -36.07185 -35.26781 -33.56136 -30.80860 -28.34151 -28.07931 -27.56683 -24.82678 -24.04352 -21.57625 -20.62339 -19.88821 -19.07885 -18.18844 -17.63700 -16.99565 -16.42939 -16.31530 -15.62882 -15.09529 -15.02048 -14.75547 -14.34254 -13.93709 -13.83901 -13.47988 -13.21038 -13.13225 -12.92886 -12.86618 -12.71213 -12.60672 -12.05605 -12.00824 -11.75336 -11.48615 -11.30171 -11.16723 -10.84817 -10.66963 -9.95372 -9.19928 -8.67162 -8.66079 -6.98844 0.05770 0.75982 1.17670 1.42914 1.43647 1.49310 1.61778 1.86091 2.10365 2.41966 2.64112 3.42271 3.98532 4.04961 4.08770 4.17318 4.32224 4.52448 4.62615 4.80178 4.81907 4.83280 4.90169 4.99444 5.07190 5.10341 5.14044 5.28792 5.32437 5.48482 5.53652 5.68838 5.73400 5.90038 6.10048 6.25790 6.41964 7.31085 7.81190 8.09186 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.026065 B = 0.005674 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.992626 B = 4933.964396 C = 5723.720876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 C -0.135 4.135 4 C -0.048 4.048 5 C 0.000 4.000 6 C -0.299 4.299 7 S 0.095 5.905 8 C 0.148 3.852 9 N -0.552 5.552 10 C 0.415 3.585 11 C -0.389 4.389 12 H 0.128 0.872 13 C 0.022 3.978 14 N -0.702 5.702 15 Si 1.009 2.991 16 H -0.259 1.259 17 H -0.267 1.267 18 H -0.245 1.245 19 N -0.670 5.670 20 H 0.410 0.590 21 C 0.561 3.439 22 O -0.589 6.589 23 C -0.399 4.399 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.181 0.819 34 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 2.789 -0.110 3.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.087 4.087 5 C -0.011 4.011 6 C -0.433 4.433 7 S 0.351 5.649 8 C -0.104 4.104 9 N -0.281 5.281 10 C 0.187 3.813 11 C -0.424 4.424 12 H 0.146 0.854 13 C -0.208 4.208 14 N -0.321 5.321 15 Si 0.827 3.173 16 H -0.184 1.184 17 H -0.191 1.191 18 H -0.168 1.168 19 N -0.313 5.313 20 H 0.248 0.752 21 C 0.357 3.643 22 O -0.473 6.473 23 C -0.414 4.414 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.198 0.802 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.164 1.536 -0.820 3.611 hybrid contribution 1.921 1.039 1.033 2.416 sum -1.242 2.574 0.213 2.866 Atomic orbital electron populations 1.21788 0.94089 1.01147 1.02404 1.20866 0.96429 0.96155 0.96537 1.21738 1.00288 0.94688 1.02506 1.20369 1.00177 0.89556 0.98640 1.18187 0.93087 0.95801 0.94012 1.24766 1.06732 0.96310 1.15448 1.83350 1.25464 1.07665 1.48403 1.24320 0.97905 0.92063 0.96077 1.68692 1.12401 1.27643 1.19393 1.19934 0.87443 0.83225 0.90739 1.20055 1.09887 0.90924 1.21574 0.85445 1.27210 0.94800 1.03121 0.95620 1.70143 1.13119 1.26483 1.22359 0.84776 0.79944 0.74453 0.78164 1.18351 1.19134 1.16812 1.44572 1.29951 1.08997 1.47822 0.75166 1.18135 0.83968 0.83160 0.78988 1.90671 1.65221 1.24912 1.66501 1.20259 1.05916 0.95543 1.19714 0.90966 0.94242 0.92170 0.95108 0.91977 0.94052 0.90947 0.89753 0.93062 0.80167 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.80 71.98 0.63 -3.32 16 2 C -0.08 -2.76 2.83 -10.79 -0.03 -2.79 16 3 C -0.13 -3.74 9.19 71.98 0.66 -3.08 16 4 C -0.05 -1.76 4.30 29.85 0.13 -1.63 16 5 C 0.00 0.00 4.41 -20.70 -0.09 -0.09 16 6 C -0.30 -11.35 10.07 66.72 0.67 -10.68 16 7 S 0.09 3.97 23.29 -56.49 -1.32 2.65 16 8 C 0.15 7.50 7.70 85.06 0.66 8.15 16 9 N -0.55 -29.18 7.69 -188.65 -1.45 -30.63 16 10 C 0.41 20.44 7.40 133.54 0.99 21.43 16 11 C -0.39 -16.94 9.19 23.09 0.21 -16.73 16 12 H 0.13 4.67 7.85 -2.91 -0.02 4.65 16 13 C 0.02 0.92 5.50 85.41 0.47 1.39 16 14 N -0.70 -32.21 11.37 21.90 0.25 -31.96 16 15 Si 1.01 29.81 29.56 68.60 2.03 31.84 16 16 H -0.26 -7.50 7.11 99.48 0.71 -6.79 16 17 H -0.27 -7.74 7.11 99.48 0.71 -7.04 16 18 H -0.25 -6.77 7.11 99.48 0.71 -6.06 16 19 N -0.67 -31.12 5.33 -311.44 -1.66 -32.78 16 20 H 0.41 16.38 8.76 -92.71 -0.81 15.56 16 21 C 0.56 28.34 8.00 86.80 0.69 29.04 16 22 O -0.59 -30.45 15.59 -4.59 -0.07 -30.52 16 23 C -0.40 -19.81 6.06 -19.86 -0.12 -19.93 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.29 7.10 -2.39 -0.02 1.27 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.03 1.29 7.68 -2.39 -0.02 1.27 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 2.57 8.06 -2.39 -0.02 2.55 16 32 H 0.05 2.14 6.98 -2.39 -0.02 2.12 16 33 H 0.18 5.49 8.06 -2.91 -0.02 5.46 16 34 H 0.30 12.00 8.29 -92.71 -0.77 11.23 16 Total: -1.00 -60.79 301.11 2.98 -57.81 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.33 Total: 31.84 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 4.87 Total: 1.75 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -2.86 Total: -95.37 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.07 Total: -30.52 kcal Atomic # 14 Polarization: 29.81 SS G_CDS: 2.03 Total: 31.84 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.32 Total: 2.65 kcal Total: -60.79 2.98 -57.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020282799.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.124 kcal (2) G-P(sol) polarization free energy of solvation -60.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds