Wall clock time and date at job start Tue Mar 31 2020 00:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86800 * 120.00138 * 2 1 4 4 H 1.48505 * 109.47102 * 239.99884 * 3 2 1 5 5 H 1.48496 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46854 * 119.99788 * 3 2 1 7 7 C 1.38624 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00140 * 179.97438 * 7 2 1 9 9 O 1.34818 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.35782 * 116.99654 * 174.61673 * 9 7 2 11 11 C 1.38908 * 119.99906 * 173.27604 * 10 9 7 12 12 C 1.38004 * 120.00477 * 179.76337 * 11 10 9 13 13 C 1.38924 * 119.99438 * 0.52874 * 12 11 10 14 14 N 1.39964 * 119.99683 * 179.69719 * 13 12 11 15 15 C 1.34776 * 120.00085 * 224.74385 * 14 13 12 16 16 S 1.71202 * 120.00081 * 356.21193 * 15 14 13 17 17 N 1.34780 * 120.00129 * 176.20508 * 15 14 13 18 18 C 1.46497 * 119.99971 * 180.02562 * 17 15 14 19 19 C 1.52999 * 117.49982 * 223.74951 * 18 17 15 20 20 C 1.53003 * 117.50081 * 155.08948 * 18 17 15 21 21 C 1.38922 * 119.99541 * 359.72803 * 13 12 11 22 22 C 1.38002 * 119.99938 * 359.97438 * 21 13 12 23 23 H 0.97008 * 119.99481 * 0.02562 * 1 2 3 24 24 H 1.08005 * 119.99736 * 0.02562 * 11 10 9 25 25 H 1.08006 * 119.99843 * 180.23250 * 12 11 10 26 26 H 0.97003 * 120.00530 * 44.75404 * 14 13 12 27 27 H 0.96997 * 120.00192 * 0.02562 * 17 15 14 28 28 H 1.08997 * 115.55137 * 9.42101 * 18 17 15 29 29 H 1.08994 * 117.49856 * 0.02562 * 19 18 17 30 30 H 1.09000 * 117.49831 * 145.01936 * 19 18 17 31 31 H 1.08995 * 117.50008 * 214.97843 * 20 18 17 32 32 H 1.09000 * 117.49201 * 359.97438 * 20 18 17 33 33 H 1.08008 * 119.99869 * 179.97438 * 21 13 12 34 34 H 1.08001 * 119.99883 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0088 -1.2005 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0695 -3.5041 -0.1146 11 6 1.4570 -4.7438 0.0184 12 6 2.2028 -5.8986 -0.1023 13 6 3.5684 -5.8211 -0.3460 14 7 4.3260 -6.9922 -0.4621 15 6 5.5162 -7.0896 0.1626 16 16 6.1464 -5.7471 1.0180 17 7 6.2103 -8.2439 0.1141 18 6 7.5038 -8.3499 0.7937 19 6 8.6442 -9.0362 0.0391 20 6 7.9682 -9.7455 1.2152 21 6 4.1818 -4.5812 -0.4737 22 6 3.4347 -3.4266 -0.3590 23 1 -0.4850 0.8402 -0.0004 24 1 0.3962 -4.8039 0.2122 25 1 1.7258 -6.8624 -0.0026 26 1 3.9946 -7.7338 -0.9924 27 1 5.8535 -9.0044 -0.3707 28 1 7.7622 -7.5154 1.4455 29 1 8.4322 -9.4085 -0.9631 30 1 9.6528 -8.6534 0.1948 31 1 8.5324 -9.8290 2.1440 32 1 7.3110 -10.5847 0.9871 33 1 5.2435 -4.5209 -0.6627 34 1 3.9115 -2.4628 -0.4587 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023104274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:32 Heat of formation + Delta-G solvation = 55.650031 kcal Electronic energy + Delta-G solvation = -18179.481293 eV Core-core repulsion = 15205.769983 eV Total energy + Delta-G solvation = -2973.711310 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.82650 -38.84668 -37.61705 -35.68154 -33.15092 -32.13067 -30.24076 -27.94134 -25.31589 -24.30800 -22.81086 -22.67658 -21.94737 -21.06766 -18.80820 -17.94844 -17.79601 -16.82388 -16.10602 -15.42931 -14.89698 -14.83273 -14.49186 -13.98329 -13.67761 -13.51316 -13.15996 -12.82828 -12.62146 -12.06461 -11.96265 -11.62916 -11.51400 -11.12680 -11.03355 -10.85299 -10.75294 -10.66929 -10.42015 -9.50997 -9.21160 -8.75114 -8.30462 -7.66900 -7.18269 -6.67255 -6.44979 -4.01609 1.25734 1.96930 2.23997 2.38620 2.60730 3.17631 3.19052 3.21167 3.48000 3.49961 3.99658 4.34802 4.52653 4.56524 4.62730 5.12202 5.20277 5.21736 5.39195 5.50153 5.65416 5.65694 5.77562 5.86186 6.14741 6.27882 6.40702 6.55617 6.78077 6.92536 7.02082 7.16989 7.28860 7.44753 7.51238 7.82188 8.01177 9.00971 9.68864 10.72508 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.034381 B = 0.003591 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.197974 B = 7795.387632 C = 8439.238221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.389 4.389 8 H 0.095 0.905 9 O -0.172 6.172 10 C 0.163 3.837 11 C -0.192 4.192 12 C -0.069 4.069 13 C 0.000 4.000 14 N -0.605 5.605 15 C 0.556 3.444 16 S -0.626 6.626 17 N -0.667 5.667 18 C 0.081 3.919 19 C -0.188 4.188 20 C -0.187 4.187 21 C -0.012 4.012 22 C -0.230 4.230 23 H 0.271 0.729 24 H 0.122 0.878 25 H 0.111 0.889 26 H 0.397 0.603 27 H 0.395 0.605 28 H 0.168 0.832 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.520 -18.382 -2.233 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.112 0.888 9 O -0.074 6.074 10 C 0.108 3.892 11 C -0.212 4.212 12 C -0.090 4.090 13 C -0.092 4.092 14 N -0.226 5.226 15 C 0.198 3.802 16 S -0.496 6.496 17 N -0.296 5.296 18 C -0.025 4.025 19 C -0.227 4.227 20 C -0.225 4.225 21 C -0.034 4.034 22 C -0.250 4.250 23 H 0.081 0.919 24 H 0.140 0.860 25 H 0.129 0.871 26 H 0.234 0.766 27 H 0.231 0.769 28 H 0.185 0.815 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.538 -17.180 -1.556 20.753 hybrid contribution -0.165 -0.819 -0.937 1.255 sum 11.373 -17.998 -2.493 21.436 Atomic orbital electron populations 1.70044 1.06001 1.27887 1.45662 1.25308 0.95852 0.98928 0.96392 0.85767 0.78708 0.79551 0.79406 1.19388 1.20316 1.19312 1.21353 0.91990 0.80708 1.52419 0.88792 1.83979 1.34459 1.11608 1.77352 1.19478 0.90456 0.87862 0.91450 1.19895 0.99929 0.89443 1.11942 1.20304 0.91791 0.97456 0.99446 1.16940 0.90112 0.83865 1.18284 1.42087 1.16484 1.17753 1.46278 1.22383 0.83942 0.89912 0.83957 1.93423 1.74066 1.27827 1.54300 1.44162 1.20638 1.11423 1.53366 1.22254 0.81413 0.98745 1.00089 1.23448 0.98422 1.04006 0.96860 1.23422 1.03759 0.95277 1.00083 1.21028 0.99772 0.90065 0.92516 1.21017 0.93778 0.98736 1.11510 0.91919 0.86045 0.87065 0.76613 0.76932 0.81520 0.88670 0.87406 0.87319 0.88668 0.84747 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -10.92 9.43 30.87 0.29 -10.63 16 8 H 0.09 2.47 5.31 -52.49 -0.28 2.19 16 9 O -0.17 -4.88 9.76 -0.02 0.00 -4.88 16 10 C 0.16 3.93 6.65 -39.09 -0.26 3.67 16 11 C -0.19 -3.96 9.98 -39.42 -0.39 -4.35 16 12 C -0.07 -1.19 9.96 -39.41 -0.39 -1.58 16 13 C 0.00 0.00 5.95 -83.64 -0.50 -0.49 16 14 N -0.60 -7.81 5.32 -11.36 -0.06 -7.87 16 15 C 0.56 7.62 7.84 -86.92 -0.68 6.94 16 16 S -0.63 -11.73 24.13 -107.50 -2.59 -14.32 16 17 N -0.67 -6.26 5.57 -55.52 -0.31 -6.57 16 18 C 0.08 0.74 6.26 -67.93 -0.43 0.31 16 19 C -0.19 -1.25 10.46 -26.69 -0.28 -1.53 16 20 C -0.19 -1.16 10.46 -26.69 -0.28 -1.44 16 21 C -0.01 -0.23 7.86 -39.41 -0.31 -0.54 16 22 C -0.23 -5.17 9.12 -39.42 -0.36 -5.53 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 25 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 26 H 0.40 3.50 8.84 -40.82 -0.36 3.14 16 27 H 0.39 2.38 8.84 -40.82 -0.36 2.02 16 28 H 0.17 1.95 6.43 -51.93 -0.33 1.61 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.13 2.67 6.05 -43.03 -0.26 2.41 16 34 H 0.13 3.00 5.72 -52.49 -0.30 2.70 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -33.66 306.98 -9.85 -43.51 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.57 Total: 8.40 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.68 Total: -14.18 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.39 Total: -38.90 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.00 Total: -4.88 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -11.73 SS G_CDS: -2.59 Total: -14.32 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.66 -9.85 -43.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.159 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds