Wall clock time and date at job start Tue Mar 31 2020 00:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86800 * 120.00138 * 2 1 4 4 H 1.48505 * 109.47102 * 239.99884 * 3 2 1 5 5 H 1.48496 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46854 * 119.99788 * 3 2 1 7 7 C 1.38624 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00140 * 179.97438 * 7 2 1 9 9 O 1.34818 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.35782 * 116.99654 * 174.61673 * 9 7 2 11 11 C 1.38908 * 119.99906 * 173.27604 * 10 9 7 12 12 C 1.38004 * 120.00477 * 179.76337 * 11 10 9 13 13 C 1.38924 * 119.99438 * 0.52874 * 12 11 10 14 14 N 1.39964 * 119.99683 * 179.69719 * 13 12 11 15 15 C 1.34776 * 120.00085 * 224.74385 * 14 13 12 16 16 S 1.71202 * 120.00081 * 356.21193 * 15 14 13 17 17 N 1.34780 * 120.00129 * 176.20508 * 15 14 13 18 18 C 1.46497 * 119.99971 * 180.02562 * 17 15 14 19 19 C 1.52999 * 117.49982 * 223.74951 * 18 17 15 20 20 C 1.53003 * 117.50081 * 155.08948 * 18 17 15 21 21 C 1.38922 * 119.99541 * 359.72803 * 13 12 11 22 22 C 1.38002 * 119.99938 * 359.97438 * 21 13 12 23 23 H 0.97008 * 119.99481 * 0.02562 * 1 2 3 24 24 H 1.08005 * 119.99736 * 0.02562 * 11 10 9 25 25 H 1.08006 * 119.99843 * 180.23250 * 12 11 10 26 26 H 0.97003 * 120.00530 * 44.75404 * 14 13 12 27 27 H 0.96997 * 120.00192 * 0.02562 * 17 15 14 28 28 H 1.08997 * 115.55137 * 9.42101 * 18 17 15 29 29 H 1.08994 * 117.49856 * 0.02562 * 19 18 17 30 30 H 1.09000 * 117.49831 * 145.01936 * 19 18 17 31 31 H 1.08995 * 117.50008 * 214.97843 * 20 18 17 32 32 H 1.09000 * 117.49201 * 359.97438 * 20 18 17 33 33 H 1.08008 * 119.99869 * 179.97438 * 21 13 12 34 34 H 1.08001 * 119.99883 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0088 -1.2005 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0695 -3.5041 -0.1146 11 6 1.4570 -4.7438 0.0184 12 6 2.2028 -5.8986 -0.1023 13 6 3.5684 -5.8211 -0.3460 14 7 4.3260 -6.9922 -0.4621 15 6 5.5162 -7.0896 0.1626 16 16 6.1464 -5.7471 1.0180 17 7 6.2103 -8.2439 0.1141 18 6 7.5038 -8.3499 0.7937 19 6 8.6442 -9.0362 0.0391 20 6 7.9682 -9.7455 1.2152 21 6 4.1818 -4.5812 -0.4737 22 6 3.4347 -3.4266 -0.3590 23 1 -0.4850 0.8402 -0.0004 24 1 0.3962 -4.8039 0.2122 25 1 1.7258 -6.8624 -0.0026 26 1 3.9946 -7.7338 -0.9924 27 1 5.8535 -9.0044 -0.3707 28 1 7.7622 -7.5154 1.4455 29 1 8.4322 -9.4085 -0.9631 30 1 9.6528 -8.6534 0.1948 31 1 8.5324 -9.8290 2.1440 32 1 7.3110 -10.5847 0.9871 33 1 5.2435 -4.5209 -0.6627 34 1 3.9115 -2.4628 -0.4587 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023104274.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:32 Heat of formation + Delta-G solvation = 33.039511 kcal Electronic energy + Delta-G solvation = -18180.461758 eV Core-core repulsion = 15205.769983 eV Total energy + Delta-G solvation = -2974.691775 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21946 -40.20881 -38.90161 -37.03171 -34.48581 -33.89081 -31.88375 -29.51696 -27.28636 -25.57055 -23.77520 -23.46273 -23.28875 -22.49375 -20.19979 -19.60259 -19.10687 -18.44437 -17.28269 -16.58083 -16.49959 -16.23632 -15.62315 -15.48624 -15.24873 -15.22425 -14.54589 -14.20493 -13.79785 -13.57972 -13.28068 -13.20903 -12.76598 -12.44994 -12.39211 -12.27578 -12.13247 -12.03337 -11.52301 -11.28445 -10.80941 -10.20158 -9.90671 -9.06950 -8.82375 -8.46932 -8.18780 -6.13216 0.01319 0.61745 0.70452 0.90473 1.36406 1.40788 1.47910 1.51871 2.19369 2.49034 2.81364 2.90568 3.17341 3.50580 3.70113 3.98654 4.06895 4.11669 4.16986 4.49234 4.51394 4.62450 4.74415 4.74665 4.99336 5.06744 5.10767 5.18821 5.30163 5.38982 5.49411 5.61421 5.74342 5.89642 6.03783 6.20865 6.40245 6.98268 7.76157 8.75486 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.034381 B = 0.003591 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.197974 B = 7795.387632 C = 8439.238221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.018 4.018 3 Si 1.014 2.986 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.413 4.413 8 H 0.097 0.903 9 O -0.223 6.223 10 C 0.127 3.873 11 C -0.197 4.197 12 C -0.052 4.052 13 C 0.033 3.967 14 N -0.592 5.592 15 C 0.583 3.417 16 S -0.729 6.729 17 N -0.629 5.629 18 C 0.042 3.958 19 C -0.173 4.173 20 C -0.161 4.161 21 C -0.018 4.018 22 C -0.241 4.241 23 H 0.274 0.726 24 H 0.129 0.871 25 H 0.165 0.835 26 H 0.427 0.573 27 H 0.420 0.580 28 H 0.137 0.863 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.121 -22.518 -3.017 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.216 4.216 3 Si 0.833 3.167 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.114 0.886 9 O -0.129 6.129 10 C 0.076 3.924 11 C -0.217 4.217 12 C -0.072 4.072 13 C -0.060 4.060 14 N -0.217 5.217 15 C 0.220 3.780 16 S -0.601 6.601 17 N -0.257 5.257 18 C -0.064 4.064 19 C -0.212 4.212 20 C -0.199 4.199 21 C -0.040 4.040 22 C -0.262 4.262 23 H 0.083 0.917 24 H 0.147 0.853 25 H 0.182 0.818 26 H 0.269 0.731 27 H 0.260 0.740 28 H 0.154 0.846 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.153 0.847 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.198 -21.465 -2.369 25.309 hybrid contribution -0.414 -0.088 -0.713 0.829 sum 12.784 -21.553 -3.082 25.248 Atomic orbital electron populations 1.70170 1.07808 1.28909 1.48531 1.26499 0.96838 1.02497 0.95759 0.84714 0.77491 0.74608 0.79859 1.18152 1.19213 1.18639 1.21728 0.92383 0.81560 1.53192 0.88598 1.83940 1.35691 1.12547 1.80725 1.20009 0.91194 0.88190 0.93053 1.20221 1.00786 0.89230 1.11495 1.20718 0.91351 0.98400 0.96737 1.16952 0.90571 0.84428 1.14098 1.41686 1.15811 1.17300 1.46880 1.21664 0.83680 0.89658 0.82976 1.93774 1.76337 1.31445 1.58511 1.44084 1.19982 1.10367 1.51309 1.22288 0.82025 1.00089 1.02016 1.23538 0.97415 1.02398 0.97800 1.23540 1.02726 0.93379 1.00292 1.21097 0.99615 0.90556 0.92710 1.20995 0.93613 0.99234 1.12318 0.91722 0.85349 0.81777 0.73137 0.73983 0.84576 0.87106 0.87087 0.86607 0.86553 0.84739 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.60 13.67 21.61 0.30 -56.31 16 2 C -0.02 -1.04 5.49 84.82 0.47 -0.57 16 3 Si 1.01 44.31 29.55 68.60 2.03 46.34 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.41 -24.71 9.43 67.91 0.64 -24.07 16 8 H 0.10 5.43 5.31 -2.91 -0.02 5.42 16 9 O -0.22 -13.54 9.76 -22.98 -0.22 -13.77 16 10 C 0.13 6.40 6.65 22.59 0.15 6.55 16 11 C -0.20 -8.04 9.98 22.37 0.22 -7.82 16 12 C -0.05 -1.61 9.96 22.38 0.22 -1.38 16 13 C 0.03 1.04 5.95 38.17 0.23 1.27 16 14 N -0.59 -12.71 5.32 -189.86 -1.01 -13.72 16 15 C 0.58 14.20 7.84 179.05 1.40 15.60 16 16 S -0.73 -27.33 24.13 -56.49 -1.36 -28.70 16 17 N -0.63 -9.17 5.57 -329.57 -1.84 -11.00 16 18 C 0.04 0.63 6.26 44.99 0.28 0.92 16 19 C -0.17 -1.60 10.46 30.62 0.32 -1.28 16 20 C -0.16 -1.29 10.46 30.62 0.32 -0.97 16 21 C -0.02 -0.70 7.86 22.38 0.18 -0.52 16 22 C -0.24 -11.34 9.12 22.37 0.20 -11.13 16 23 H 0.27 15.49 8.31 -92.70 -0.77 14.71 16 24 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 25 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 26 H 0.43 4.85 8.84 -92.71 -0.82 4.03 16 27 H 0.42 2.53 8.84 -92.71 -0.82 1.71 16 28 H 0.14 3.09 6.43 -2.39 -0.02 3.07 16 29 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.13 5.40 6.05 -8.91 -0.05 5.35 16 34 H 0.11 5.64 5.72 -2.91 -0.02 5.62 16 Total: -1.00 -81.83 306.98 2.01 -79.82 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.52 Total: 20.74 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 4.64 Total: -23.41 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.55 Total: -81.03 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.22 Total: -13.77 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -27.33 SS G_CDS: -1.36 Total: -28.70 kcal Total: -81.83 2.01 -79.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104274.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.862 kcal (2) G-P(sol) polarization free energy of solvation -81.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds