Wall clock time and date at job start Tue Mar 31 2020 00:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86802 * 119.99959 * 2 1 4 4 H 1.48505 * 109.47116 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47111 * 299.99467 * 3 2 1 6 6 H 1.48503 * 109.47217 * 59.99705 * 3 2 1 7 7 C 1.38653 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99987 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.35746 * 116.99689 * 184.72522 * 9 7 2 11 11 C 1.38950 * 120.03513 * 353.14396 * 10 9 7 12 12 C 1.38132 * 120.07605 * 179.69509 * 11 10 9 13 13 C 1.38203 * 120.13531 * 0.60773 * 12 11 10 14 14 C 1.38936 * 120.06309 * 359.66916 * 13 12 11 15 15 N 1.39888 * 120.03141 * 180.02562 * 14 13 12 16 16 C 1.34779 * 119.99780 * 224.18600 * 15 14 13 17 17 S 1.71192 * 120.00168 * 356.39703 * 16 15 14 18 18 N 1.34780 * 119.99682 * 176.39532 * 16 15 14 19 19 C 1.46501 * 119.99518 * 180.02562 * 18 16 15 20 20 C 1.53002 * 117.49510 * 223.74290 * 19 18 16 21 21 C 1.53002 * 117.49705 * 155.08392 * 19 18 16 22 22 C 1.38735 * 120.03213 * 173.42123 * 10 9 7 23 23 H 0.97003 * 120.00114 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.96904 * 359.97438 * 11 10 9 25 25 H 1.08000 * 119.93693 * 180.27312 * 12 11 10 26 26 H 1.07998 * 119.96915 * 179.70065 * 13 12 11 27 27 H 0.96999 * 120.00177 * 44.19539 * 15 14 13 28 28 H 0.96997 * 120.00398 * 359.97438 * 18 16 15 29 29 H 1.08998 * 115.55395 * 9.41748 * 19 18 16 30 30 H 1.09005 * 117.50003 * 359.97438 * 20 19 18 31 31 H 1.09000 * 117.49857 * 145.02024 * 20 19 18 32 32 H 1.08996 * 117.50032 * 214.97665 * 21 19 18 33 33 H 1.08998 * 117.49856 * 359.97438 * 21 19 18 34 34 H 1.08000 * 120.06643 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0704 -3.5048 0.1007 11 6 3.4577 -3.4415 0.0538 12 6 4.2074 -4.5966 0.1620 13 6 3.5804 -5.8199 0.3046 14 6 2.1934 -5.8905 0.3464 15 7 1.5595 -7.1290 0.4912 16 6 0.4882 -7.4307 -0.2690 17 16 -0.1531 -6.2644 -1.3456 18 7 -0.0782 -8.6506 -0.1815 19 6 -1.2423 -8.9786 -1.0082 20 6 -2.3988 -9.7219 -0.3366 21 6 -1.4895 -10.4546 -1.3263 22 6 1.4379 -4.7312 0.2442 23 1 -0.4850 0.8401 -0.0004 24 1 3.9506 -2.4876 -0.0628 25 1 5.2856 -4.5443 0.1297 26 1 4.1691 -6.7219 0.3840 27 1 1.8908 -7.7707 1.1388 28 1 0.2854 -9.3115 0.4283 29 1 -1.4926 -8.2490 -1.7784 30 1 -2.2932 -9.9672 0.7203 31 1 -3.4099 -9.4816 -0.6651 32 1 -1.9028 -10.6960 -2.3056 33 1 -0.7857 -11.1815 -0.9209 34 1 0.3596 -4.7834 0.2760 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044196869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:57 Heat of formation + Delta-G solvation = 34.884528 kcal Electronic energy + Delta-G solvation = -18360.127443 eV Core-core repulsion = 15385.515673 eV Total energy + Delta-G solvation = -2974.611769 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25347 -40.18507 -38.87182 -37.10523 -34.44777 -34.12531 -31.14399 -29.96658 -27.29313 -25.69150 -23.83840 -23.32489 -23.14127 -22.72575 -20.25206 -19.75993 -18.96070 -18.04398 -16.88714 -16.82338 -16.52289 -16.37867 -15.91253 -15.50579 -15.40865 -15.29001 -14.44475 -14.23231 -13.79607 -13.55381 -13.22770 -12.84611 -12.74052 -12.46447 -12.35203 -12.26741 -12.11596 -12.02190 -11.55077 -11.24021 -10.79697 -10.43268 -9.57706 -9.12548 -8.88003 -8.40913 -8.17421 -6.08888 -0.09977 0.64261 0.78036 0.84367 1.33544 1.37425 1.46813 1.56442 2.20859 2.41916 2.85587 2.88307 3.21192 3.57389 3.67545 3.96749 4.05175 4.18949 4.37889 4.38513 4.50833 4.63969 4.72388 4.81363 4.94560 4.98045 5.14295 5.17131 5.29503 5.40095 5.56448 5.67002 5.77094 5.86367 6.09120 6.21484 6.37441 7.02724 7.88525 8.83270 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.004110 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.055966 B = 6810.372624 C = 7656.466760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.029 4.029 3 Si 1.022 2.978 4 H -0.246 1.246 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.410 4.410 8 H 0.106 0.894 9 O -0.234 6.234 10 C 0.115 3.885 11 C -0.236 4.236 12 C -0.065 4.065 13 C -0.180 4.180 14 C 0.156 3.844 15 N -0.601 5.601 16 C 0.585 3.415 17 S -0.725 6.725 18 N -0.624 5.624 19 C 0.036 3.964 20 C -0.174 4.174 21 C -0.154 4.154 22 C -0.151 4.151 23 H 0.270 0.730 24 H 0.122 0.878 25 H 0.159 0.841 26 H 0.162 0.838 27 H 0.431 0.569 28 H 0.421 0.579 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.071 -23.139 3.667 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.225 4.225 3 Si 0.841 3.159 4 H -0.170 1.170 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.486 4.486 8 H 0.123 0.877 9 O -0.141 6.141 10 C 0.064 3.936 11 C -0.256 4.256 12 C -0.084 4.084 13 C -0.200 4.200 14 C 0.062 3.938 15 N -0.228 5.228 16 C 0.223 3.777 17 S -0.597 6.597 18 N -0.252 5.252 19 C -0.070 4.070 20 C -0.213 4.213 21 C -0.192 4.192 22 C -0.174 4.174 23 H 0.079 0.921 24 H 0.140 0.860 25 H 0.177 0.823 26 H 0.180 0.820 27 H 0.274 0.726 28 H 0.262 0.738 29 H 0.151 0.849 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.167 -22.247 2.874 22.816 hybrid contribution 0.278 0.102 0.818 0.870 sum 4.445 -22.145 3.692 22.886 Atomic orbital electron populations 1.70244 1.08259 1.28526 1.49245 1.26674 0.96829 1.02955 0.96074 0.84489 0.78396 0.74622 0.78383 1.16951 1.19708 1.19314 1.21935 0.92611 0.81402 1.52683 0.87689 1.83980 1.35964 1.12561 1.81569 1.19583 0.91473 0.87479 0.95060 1.21398 0.92675 1.00780 1.10700 1.20952 1.00500 0.90363 0.96556 1.20855 0.90791 0.99427 1.08961 1.16904 0.91396 0.81850 1.03603 1.41778 1.26913 1.16917 1.37174 1.21630 0.82948 0.87793 0.85359 1.94116 1.73223 1.46024 1.46370 1.44089 1.29877 1.09803 1.41447 1.22313 0.87482 0.98059 0.99107 1.23550 0.95966 1.01990 0.99790 1.23548 1.02067 0.91610 1.01989 1.20409 1.00608 0.89717 1.06675 0.92061 0.85980 0.82311 0.82017 0.72628 0.73787 0.84914 0.86982 0.87248 0.86481 0.86161 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -60.20 13.67 21.61 0.30 -59.90 16 2 C -0.03 -1.71 5.49 84.83 0.47 -1.24 16 3 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.41 -25.03 9.49 67.92 0.64 -24.39 16 8 H 0.11 5.78 5.21 -2.91 -0.02 5.76 16 9 O -0.23 -15.15 9.76 -22.75 -0.22 -15.37 16 10 C 0.12 6.14 6.64 22.56 0.15 6.29 16 11 C -0.24 -10.37 9.16 22.42 0.21 -10.16 16 12 C -0.06 -2.10 10.03 22.24 0.22 -1.88 16 13 C -0.18 -5.15 9.97 22.43 0.22 -4.93 16 14 C 0.16 5.37 5.96 38.15 0.23 5.60 16 15 N -0.60 -14.72 5.32 -190.04 -1.01 -15.73 16 16 C 0.58 16.68 7.84 179.05 1.40 18.08 16 17 S -0.73 -32.18 24.10 -56.49 -1.36 -33.54 16 18 N -0.62 -11.01 5.57 -329.56 -1.84 -12.85 16 19 C 0.04 0.67 6.26 44.99 0.28 0.95 16 20 C -0.17 -2.13 10.46 30.62 0.32 -1.81 16 21 C -0.15 -1.53 10.46 30.62 0.32 -1.21 16 22 C -0.15 -7.18 7.81 22.51 0.18 -7.00 16 23 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 24 H 0.12 5.41 5.65 -2.91 -0.02 5.39 16 25 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 26 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 27 H 0.43 5.67 8.84 -92.71 -0.82 4.85 16 28 H 0.42 3.42 8.84 -92.71 -0.82 2.60 16 29 H 0.13 3.57 6.43 -2.39 -0.02 3.56 16 30 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.12 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 6.14 6.00 -9.69 -0.06 6.08 16 Total: -1.00 -90.44 306.83 2.02 -88.42 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.52 Total: 23.92 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 4.64 Total: -21.70 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -2.55 Total: -88.48 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.22 Total: -15.37 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -32.18 SS G_CDS: -1.36 Total: -33.54 kcal Total: -90.44 2.02 -88.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044196869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.308 kcal (2) G-P(sol) polarization free energy of solvation -90.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds