Wall clock time and date at job start Tue Mar 31 2020 00:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00159 * 2 1 4 4 H 1.48506 * 109.46975 * 270.00156 * 3 2 1 5 5 H 1.48501 * 109.47021 * 29.99936 * 3 2 1 6 6 H 1.48497 * 109.47145 * 150.00244 * 3 2 1 7 7 C 1.38851 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99448 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.76195 * 100.00126 * 180.02562 * 9 7 2 11 11 C 1.39483 * 119.54302 * 180.02562 * 10 9 7 12 12 C 1.36865 * 119.36847 * 180.02562 * 11 10 9 13 13 C 1.40383 * 118.49534 * 359.97438 * 12 11 10 14 14 C 1.47522 * 120.46934 * 180.02562 * 13 12 11 15 15 O 1.21599 * 119.99587 * 172.38458 * 14 13 12 16 16 N 1.34780 * 120.00081 * 352.65899 * 14 13 12 17 17 C 1.47016 * 125.64803 * 4.51257 * 16 14 13 18 18 C 1.54323 * 107.27391 * 180.96787 * 17 16 14 19 19 C 1.55154 * 102.86327 * 22.52556 * 18 17 16 20 20 C 1.47427 * 125.64433 * 184.81993 * 16 14 13 21 21 C 1.39669 * 119.05527 * 0.27689 * 13 12 11 22 22 N 1.31583 * 120.52751 * 359.44980 * 21 13 12 23 23 H 0.96999 * 119.99921 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.31486 * 359.97438 * 11 10 9 25 25 H 1.08008 * 120.75235 * 179.97438 * 12 11 10 26 26 H 1.08995 * 109.88322 * 300.51108 * 17 16 14 27 27 H 1.09005 * 109.88341 * 61.67783 * 17 16 14 28 28 H 1.09004 * 110.92330 * 264.11154 * 18 17 16 29 29 H 1.08997 * 110.74109 * 140.85696 * 18 17 16 30 30 H 1.08999 * 111.00317 * 206.22653 * 19 18 17 31 31 H 1.08998 * 111.00341 * 82.37539 * 19 18 17 32 32 H 1.08998 * 110.36811 * 274.67109 * 20 16 14 33 33 H 1.09004 * 110.36831 * 36.88783 * 20 16 14 34 34 H 1.08002 * 119.73420 * 179.72653 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0094 -1.2025 -0.0005 8 1 3.0894 -1.2025 -0.0001 9 16 1.1284 -2.7284 -0.0005 10 6 2.4781 -3.8610 -0.0005 11 6 2.2249 -5.2327 -0.0011 12 6 3.2760 -6.1093 -0.0005 13 6 4.5805 -5.5907 0.0000 14 6 5.7454 -6.4960 0.0000 15 8 6.8659 -6.0448 -0.1391 16 7 5.5670 -7.8236 0.1487 17 6 4.2695 -8.5106 0.2257 18 6 4.5579 -10.0142 0.4191 19 6 5.9904 -10.0174 1.0149 20 6 6.6409 -8.8268 0.2673 21 6 4.7599 -4.2056 0.0059 22 7 3.7217 -3.3972 -0.0001 23 1 -0.4850 0.8400 0.0004 24 1 1.2091 -5.5995 -0.0011 25 1 3.1056 -7.1759 -0.0005 26 1 3.6978 -8.1291 1.0717 27 1 3.7135 -8.3576 -0.6993 28 1 4.5359 -10.5407 -0.5352 29 1 3.8483 -10.4565 1.1184 30 1 6.5061 -10.9504 0.7874 31 1 5.9669 -9.8379 2.0897 32 1 6.9795 -9.1386 -0.7207 33 1 7.4740 -8.4243 0.8435 34 1 5.7587 -3.7948 0.0108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048299153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:57 Heat of formation + Delta-G solvation = 13.959391 kcal Electronic energy + Delta-G solvation = -18498.347624 eV Core-core repulsion = 15522.828473 eV Total energy + Delta-G solvation = -2975.519151 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39442 -38.68411 -37.20513 -32.88623 -32.72555 -31.30348 -30.54859 -29.15475 -25.86119 -24.99784 -23.08114 -22.68058 -21.32767 -19.81149 -18.24145 -17.20628 -16.75181 -16.31612 -15.77286 -15.21109 -15.00621 -14.45606 -13.92046 -13.84207 -13.66985 -13.39906 -13.23803 -12.87955 -12.66855 -12.34380 -12.05308 -11.48892 -11.27159 -11.19374 -11.06212 -10.97896 -10.86484 -10.14048 -9.83213 -9.70502 -9.33805 -8.97806 -8.89800 -8.65731 -8.60989 -6.88066 -6.56313 -4.25128 1.15382 1.93347 2.91927 3.03114 3.12237 3.19029 3.20163 3.29024 3.94972 4.24604 4.31437 4.39395 4.64445 4.84132 4.90860 4.96625 5.00073 5.11225 5.27760 5.29223 5.37205 5.45490 5.55352 5.61452 5.68638 5.73373 5.78043 5.87190 6.23532 6.31026 6.48701 6.55784 7.16189 7.50478 7.53140 8.35548 8.35790 8.60352 8.96965 10.51095 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.038510 B = 0.003833 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.901422 B = 7303.948460 C = 7963.543854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.074 3.926 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.112 0.888 9 S 0.129 5.871 10 C 0.119 3.881 11 C -0.197 4.197 12 C -0.060 4.060 13 C -0.260 4.260 14 C 0.591 3.409 15 O -0.550 6.550 16 N -0.622 5.622 17 C 0.091 3.909 18 C -0.136 4.136 19 C -0.134 4.134 20 C 0.107 3.893 21 C 0.189 3.811 22 N -0.492 5.492 23 H 0.275 0.725 24 H 0.131 0.869 25 H 0.155 0.845 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.430 -18.717 1.270 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.685 4.685 8 H 0.130 0.870 9 S 0.386 5.614 10 C -0.129 4.129 11 C -0.226 4.226 12 C -0.087 4.087 13 C -0.274 4.274 14 C 0.383 3.617 15 O -0.429 6.429 16 N -0.357 5.357 17 C -0.031 4.031 18 C -0.174 4.174 19 C -0.172 4.172 20 C -0.016 4.016 21 C 0.021 3.979 22 N -0.206 5.206 23 H 0.085 0.915 24 H 0.149 0.851 25 H 0.171 0.829 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.481 -17.247 1.181 17.859 hybrid contribution 1.565 0.235 -0.029 1.582 sum 6.045 -17.012 1.152 18.091 Atomic orbital electron populations 1.69928 1.06286 1.28671 1.45553 1.25215 0.95142 1.00061 0.93187 0.85937 0.79697 0.79949 0.78788 1.19857 1.20636 1.18935 1.23558 0.97812 0.89776 1.57354 0.87030 1.83474 1.02581 0.97593 1.77737 1.24602 0.97966 0.96477 0.93813 1.21267 0.99764 0.92657 1.08892 1.22365 0.91680 1.01411 0.93234 1.20262 0.92944 0.95152 1.18999 1.17870 0.88755 0.79826 0.75243 1.90738 1.25638 1.75477 1.51055 1.48318 1.07398 1.05826 1.74152 1.22526 0.86571 0.92186 1.01860 1.22727 0.97426 0.95203 1.02009 1.22794 0.95845 0.98152 1.00438 1.22175 0.91155 0.88011 1.00227 1.22912 0.98153 0.88354 0.88431 1.68403 0.97980 1.37382 1.16815 0.91482 0.85135 0.82870 0.90230 0.90395 0.90432 0.89838 0.89869 0.90533 0.91649 0.90470 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.12 13.22 55.49 0.73 -23.39 16 2 C 0.07 1.99 5.49 -17.46 -0.10 1.89 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -14.81 9.25 30.96 0.29 -14.52 16 8 H 0.11 3.14 6.52 -52.49 -0.34 2.80 16 9 S 0.13 3.18 21.63 -107.50 -2.33 0.86 16 10 C 0.12 2.64 6.97 -16.70 -0.12 2.52 16 11 C -0.20 -3.51 9.77 -39.61 -0.39 -3.89 16 12 C -0.06 -0.94 8.62 -39.27 -0.34 -1.27 16 13 C -0.26 -4.61 5.89 -104.77 -0.62 -5.23 16 14 C 0.59 10.00 7.80 -12.47 -0.10 9.90 16 15 O -0.55 -10.93 16.69 5.28 0.09 -10.84 16 16 N -0.62 -7.96 3.33 -172.94 -0.58 -8.53 16 17 C 0.09 0.84 4.86 -3.07 -0.01 0.83 16 18 C -0.14 -0.86 6.95 -24.90 -0.17 -1.03 16 19 C -0.13 -0.91 7.08 -24.58 -0.17 -1.08 16 20 C 0.11 1.09 6.89 -2.53 -0.02 1.07 16 21 C 0.19 3.82 10.76 -17.12 -0.18 3.64 16 22 N -0.49 -11.33 8.42 -11.65 -0.10 -11.43 16 23 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 25 H 0.15 1.77 2.91 -54.04 -0.16 1.61 16 26 H 0.08 0.72 6.69 -51.93 -0.35 0.38 16 27 H 0.08 0.68 6.77 -51.93 -0.35 0.33 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.15 2.95 7.67 -52.49 -0.40 2.55 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -31.99 300.23 -8.30 -40.29 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -3.69 Total: -0.30 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.93 Total: -7.19 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.06 Total: -43.35 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.33 Total: 0.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.99 -8.30 -40.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048299153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.245 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds