Wall clock time and date at job start Tue Mar 31 2020 00:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 120.00159 * 2 1 4 4 H 1.48506 * 109.46975 * 270.00156 * 3 2 1 5 5 H 1.48501 * 109.47021 * 29.99936 * 3 2 1 6 6 H 1.48497 * 109.47145 * 150.00244 * 3 2 1 7 7 C 1.38851 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99448 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.76195 * 100.00126 * 180.02562 * 9 7 2 11 11 C 1.39483 * 119.54302 * 180.02562 * 10 9 7 12 12 C 1.36865 * 119.36847 * 180.02562 * 11 10 9 13 13 C 1.40383 * 118.49534 * 359.97438 * 12 11 10 14 14 C 1.47522 * 120.46934 * 180.02562 * 13 12 11 15 15 O 1.21599 * 119.99587 * 172.38458 * 14 13 12 16 16 N 1.34780 * 120.00081 * 352.65899 * 14 13 12 17 17 C 1.47016 * 125.64803 * 4.51257 * 16 14 13 18 18 C 1.54323 * 107.27391 * 180.96787 * 17 16 14 19 19 C 1.55154 * 102.86327 * 22.52556 * 18 17 16 20 20 C 1.47427 * 125.64433 * 184.81993 * 16 14 13 21 21 C 1.39669 * 119.05527 * 0.27689 * 13 12 11 22 22 N 1.31583 * 120.52751 * 359.44980 * 21 13 12 23 23 H 0.96999 * 119.99921 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.31486 * 359.97438 * 11 10 9 25 25 H 1.08008 * 120.75235 * 179.97438 * 12 11 10 26 26 H 1.08995 * 109.88322 * 300.51108 * 17 16 14 27 27 H 1.09005 * 109.88341 * 61.67783 * 17 16 14 28 28 H 1.09004 * 110.92330 * 264.11154 * 18 17 16 29 29 H 1.08997 * 110.74109 * 140.85696 * 18 17 16 30 30 H 1.08999 * 111.00317 * 206.22653 * 19 18 17 31 31 H 1.08998 * 111.00341 * 82.37539 * 19 18 17 32 32 H 1.08998 * 110.36811 * 274.67109 * 20 16 14 33 33 H 1.09004 * 110.36831 * 36.88783 * 20 16 14 34 34 H 1.08002 * 119.73420 * 179.72653 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0094 -1.2025 -0.0005 8 1 3.0894 -1.2025 -0.0001 9 16 1.1284 -2.7284 -0.0005 10 6 2.4781 -3.8610 -0.0005 11 6 2.2249 -5.2327 -0.0011 12 6 3.2760 -6.1093 -0.0005 13 6 4.5805 -5.5907 0.0000 14 6 5.7454 -6.4960 0.0000 15 8 6.8659 -6.0448 -0.1391 16 7 5.5670 -7.8236 0.1487 17 6 4.2695 -8.5106 0.2257 18 6 4.5579 -10.0142 0.4191 19 6 5.9904 -10.0174 1.0149 20 6 6.6409 -8.8268 0.2673 21 6 4.7599 -4.2056 0.0059 22 7 3.7217 -3.3972 -0.0001 23 1 -0.4850 0.8400 0.0004 24 1 1.2091 -5.5995 -0.0011 25 1 3.1056 -7.1759 -0.0005 26 1 3.6978 -8.1291 1.0717 27 1 3.7135 -8.3576 -0.6993 28 1 4.5359 -10.5407 -0.5352 29 1 3.8483 -10.4565 1.1184 30 1 6.5061 -10.9504 0.7874 31 1 5.9669 -9.8379 2.0897 32 1 6.9795 -9.1386 -0.7207 33 1 7.4740 -8.4243 0.8435 34 1 5.7587 -3.7948 0.0108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048299153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:57 Heat of formation + Delta-G solvation = -7.031597 kcal Electronic energy + Delta-G solvation = -18499.257862 eV Core-core repulsion = 15522.828473 eV Total energy + Delta-G solvation = -2976.429389 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69123 -40.06859 -38.35376 -34.79203 -34.16889 -32.56643 -31.86990 -29.99563 -27.84654 -26.29206 -24.51075 -23.88341 -22.05567 -20.98171 -20.10913 -18.54445 -17.98185 -17.58948 -17.11302 -16.97735 -16.61786 -15.61531 -15.51931 -15.08662 -14.76790 -14.63184 -14.49272 -14.15094 -13.75657 -13.63490 -13.19463 -13.07032 -13.01599 -12.73076 -12.10477 -11.95595 -11.75295 -11.58314 -11.46432 -11.24392 -10.92472 -10.90881 -10.59985 -10.21181 -9.72846 -8.72523 -8.54371 -6.29219 -0.36997 0.42348 1.19226 1.35813 1.37156 1.51103 1.76138 1.93773 2.11106 2.80433 2.93657 3.00591 3.43081 3.62278 3.69827 3.81013 4.03060 4.10647 4.18865 4.25352 4.30107 4.49626 4.60971 4.80136 4.84017 4.95654 5.01367 5.01819 5.05622 5.17546 5.29265 5.41344 5.47048 5.67065 6.26268 6.37802 6.93042 6.98658 7.05154 8.54783 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.038510 B = 0.003833 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.901422 B = 7303.948460 C = 7963.543854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.028 3.972 3 Si 0.992 3.008 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.561 4.561 8 H 0.093 0.907 9 S 0.073 5.927 10 C 0.106 3.894 11 C -0.182 4.182 12 C -0.041 4.041 13 C -0.240 4.240 14 C 0.584 3.416 15 O -0.588 6.588 16 N -0.615 5.615 17 C 0.071 3.929 18 C -0.124 4.124 19 C -0.124 4.124 20 C 0.096 3.904 21 C 0.162 3.838 22 N -0.525 5.525 23 H 0.279 0.721 24 H 0.164 0.836 25 H 0.207 0.793 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -22.424 1.421 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.814 3.186 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.709 4.709 8 H 0.111 0.889 9 S 0.326 5.674 10 C -0.142 4.142 11 C -0.210 4.210 12 C -0.068 4.068 13 C -0.252 4.252 14 C 0.375 3.625 15 O -0.470 6.470 16 N -0.348 5.348 17 C -0.050 4.050 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.026 4.026 21 C -0.003 4.003 22 N -0.239 5.239 23 H 0.089 0.911 24 H 0.182 0.818 25 H 0.223 0.777 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.794 -21.055 1.338 21.635 hybrid contribution 1.730 0.972 -0.071 1.986 sum 6.524 -20.083 1.267 21.154 Atomic orbital electron populations 1.69996 1.07350 1.29503 1.46906 1.26020 0.95987 1.02983 0.92810 0.85041 0.78222 0.76365 0.78990 1.19186 1.19157 1.19468 1.23595 0.97183 0.91583 1.58532 0.88851 1.83231 1.04393 0.97680 1.82052 1.24585 0.96882 0.97609 0.95112 1.21680 1.02174 0.90754 1.06423 1.22996 0.89640 1.03659 0.90457 1.20573 0.94747 0.94460 1.15419 1.17722 0.87664 0.81349 0.75757 1.90726 1.26720 1.76632 1.52946 1.48405 1.10111 1.04780 1.71473 1.22896 0.84965 0.94311 1.02838 1.22737 0.97260 0.92720 1.03448 1.22798 0.96135 0.97317 0.99976 1.22461 0.90493 0.88536 1.01114 1.22998 0.97566 0.89720 0.90010 1.68250 0.98980 1.39245 1.17409 0.91130 0.81841 0.77735 0.89336 0.89016 0.88956 0.87451 0.87392 0.90481 0.90882 0.92062 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.63 13.22 21.65 0.29 -51.35 16 2 C 0.03 1.56 5.49 84.89 0.47 2.03 16 3 Si 0.99 44.44 29.55 68.60 2.03 46.47 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.56 -32.44 9.25 67.97 0.63 -31.81 16 8 H 0.09 5.57 6.52 -2.91 -0.02 5.55 16 9 S 0.07 3.75 21.63 -56.49 -1.22 2.53 16 10 C 0.11 4.73 6.97 84.86 0.59 5.33 16 11 C -0.18 -6.06 9.77 22.25 0.22 -5.84 16 12 C -0.04 -1.14 8.62 22.47 0.19 -0.94 16 13 C -0.24 -8.12 5.89 -19.96 -0.12 -8.24 16 14 C 0.58 18.80 7.80 86.69 0.68 19.48 16 15 O -0.59 -23.25 16.69 -4.03 -0.07 -23.32 16 16 N -0.62 -13.74 3.33 -819.32 -2.73 -16.46 16 17 C 0.07 0.94 4.86 86.73 0.42 1.36 16 18 C -0.12 -0.83 6.95 31.78 0.22 -0.61 16 19 C -0.12 -1.10 7.08 31.99 0.23 -0.88 16 20 C 0.10 1.66 6.89 86.86 0.60 2.26 16 21 C 0.16 6.67 10.76 85.08 0.92 7.59 16 22 N -0.52 -24.91 8.42 -190.76 -1.61 -26.52 16 23 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 24 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 25 H 0.21 3.54 2.91 -4.37 -0.01 3.53 16 26 H 0.09 1.09 6.69 -2.39 -0.02 1.07 16 27 H 0.09 1.04 6.77 -2.38 -0.02 1.02 16 28 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 34 H 0.15 6.13 7.67 -2.91 -0.02 6.10 16 Total: -1.00 -74.61 300.23 2.86 -71.75 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.12 Total: 7.18 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 5.04 Total: -10.29 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -4.05 Total: -94.32 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.07 Total: -23.32 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.22 Total: 2.53 kcal Total: -74.61 2.86 -71.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048299153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.719 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds