Wall clock time and date at job start Tue Mar 31 2020 01:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 110.53149 * 2 1 4 4 C 1.38214 * 120.01442 * 121.40034 * 3 2 1 5 5 C 1.38232 * 120.02931 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.04778 * 359.97438 * 5 4 3 7 7 C 1.38175 * 120.02281 * 0.02562 * 6 5 4 8 8 C 1.38444 * 120.01442 * 301.37710 * 3 2 1 9 9 F 1.35103 * 120.02359 * 359.74367 * 8 3 2 10 10 N 1.47311 * 110.60215 * 122.82767 * 2 1 3 11 11 C 1.34533 * 106.61412 * 118.68244 * 10 2 1 12 12 O 1.21526 * 123.76396 * 180.02562 * 11 10 2 13 13 N 1.33785 * 112.46293 * 0.02562 * 11 10 2 14 14 C 1.37503 * 124.18005 * 179.97438 * 13 11 10 15 15 H 1.08005 * 120.00196 * 327.09490 * 14 13 11 16 16 C 1.38893 * 120.00312 * 147.08761 * 14 13 11 17 17 N 1.31386 * 120.00283 * 340.12587 * 16 14 13 18 18 Si 1.86806 * 120.00347 * 160.12043 * 16 14 13 19 19 H 1.48497 * 109.46707 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47042 * 120.00214 * 18 16 14 21 21 H 1.48501 * 109.47154 * 240.00503 * 18 16 14 22 22 C 1.34770 * 111.64230 * 359.97438 * 13 11 10 23 23 O 1.21233 * 127.15751 * 180.02562 * 22 13 11 24 24 H 1.08992 * 109.47431 * 60.00328 * 1 2 3 25 25 H 1.09009 * 109.46608 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47163 * 299.99640 * 1 2 3 27 27 H 1.08005 * 119.98834 * 359.97394 * 4 3 2 28 28 H 1.07998 * 119.97182 * 179.97438 * 5 4 3 29 29 H 1.08005 * 119.98439 * 179.97438 * 6 5 4 30 30 H 1.08011 * 120.00662 * 180.02562 * 7 6 5 31 31 H 0.96996 * 126.69231 * 298.71741 * 10 2 1 32 32 H 0.96995 * 120.00486 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0585 1.4113 0.0000 4 6 2.8849 1.8400 1.0215 5 6 3.3704 3.1343 1.0215 6 6 3.0303 4.0013 -0.0004 7 6 2.2042 3.5748 -1.0227 8 6 1.7169 2.2787 -1.0235 9 9 0.9137 1.8590 -2.0255 10 7 2.0483 -0.7475 1.1587 11 6 2.7629 -1.7751 0.6652 12 8 3.3321 -2.5959 1.3573 13 7 2.7767 -1.7922 -0.6725 14 6 3.4341 -2.7359 -1.4261 15 1 4.3545 -3.1704 -1.0647 16 6 2.9144 -3.1308 -2.6522 17 7 1.6457 -2.9252 -2.9249 18 14 4.0192 -3.9540 -3.9137 19 1 5.3948 -4.0693 -3.3664 20 1 3.4945 -5.3085 -4.2223 21 1 4.0464 -3.1390 -5.1547 22 6 2.0669 -0.7702 -1.1901 23 8 1.8935 -0.5192 -2.3634 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1516 1.1636 1.8201 28 1 4.0157 3.4685 1.8204 29 1 3.4098 5.0125 0.0008 30 1 1.9390 4.2522 -1.8211 31 1 1.9025 -0.5397 2.0948 32 1 1.2828 -3.2005 -3.7812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049418791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:08 Heat of formation + Delta-G solvation = -68.165243 kcal Electronic energy + Delta-G solvation = -22351.938059 eV Core-core repulsion = 18806.644540 eV Total energy + Delta-G solvation = -3545.293519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.81714 -43.21370 -39.93597 -39.02836 -37.11416 -36.23036 -33.90536 -32.41378 -31.59928 -30.27847 -27.86365 -25.66775 -23.97333 -23.64875 -22.64014 -21.61129 -19.52062 -18.70789 -18.09144 -17.62905 -17.58625 -17.23769 -16.60389 -16.35169 -16.15814 -15.87625 -15.67185 -15.20048 -14.85718 -14.66194 -14.48551 -13.93324 -13.62012 -13.38023 -13.36606 -13.09756 -12.98207 -12.88862 -12.54418 -12.17968 -11.98429 -11.63422 -11.34041 -10.82827 -10.53260 -10.10904 -9.87243 -9.57473 -8.53082 -6.36948 0.11520 0.25141 1.05990 1.34245 1.39286 1.52141 1.79687 2.26300 2.41925 2.51940 2.80727 3.07217 3.24505 3.37088 3.49567 3.81127 3.90615 4.16555 4.39279 4.41723 4.53622 4.59486 4.78133 4.86935 5.00196 5.13403 5.20448 5.28755 5.37145 5.45238 5.83739 5.94487 5.96876 6.28318 6.66152 7.11707 7.15297 7.78556 8.57408 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.007421 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.745987 B = 3772.028118 C = 4239.852584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.084 4.084 5 C -0.123 4.123 6 C -0.077 4.077 7 C -0.159 4.159 8 C 0.092 3.908 9 F -0.142 7.142 10 N -0.706 5.706 11 C 0.674 3.326 12 O -0.602 6.602 13 N -0.431 5.431 14 C -0.387 4.387 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.859 5.859 18 Si 0.997 3.003 19 H -0.256 1.256 20 H -0.265 1.265 21 H -0.275 1.275 22 C 0.490 3.510 23 O -0.480 6.480 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.141 0.859 28 H 0.167 0.833 29 H 0.174 0.826 30 H 0.155 0.845 31 H 0.444 0.556 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 15.652 7.057 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.081 3.919 3 C -0.143 4.143 4 C -0.102 4.102 5 C -0.141 4.141 6 C -0.094 4.094 7 C -0.177 4.177 8 C 0.072 3.928 9 F -0.121 7.121 10 N -0.372 5.372 11 C 0.377 3.623 12 O -0.482 6.482 13 N -0.163 5.163 14 C -0.513 4.513 15 H 0.111 0.889 16 C -0.195 4.195 17 N -0.492 5.492 18 Si 0.818 3.182 19 H -0.180 1.180 20 H -0.190 1.190 21 H -0.201 1.201 22 C 0.277 3.723 23 O -0.351 6.351 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.126 0.874 27 H 0.158 0.842 28 H 0.184 0.816 29 H 0.191 0.809 30 H 0.172 0.828 31 H 0.291 0.709 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.448 15.238 6.526 16.583 hybrid contribution -0.144 -0.998 -0.593 1.170 sum -0.592 14.240 5.933 15.438 Atomic orbital electron populations 1.21942 0.89202 1.03191 1.04974 1.19995 0.97317 0.89801 0.84773 1.19673 1.03569 0.92744 0.98320 1.21125 0.94529 0.97563 0.97019 1.21599 1.00110 0.92216 1.00197 1.21524 0.94596 1.01571 0.91740 1.21464 1.00575 0.93342 1.02362 1.17935 0.94237 0.94442 0.86159 1.91522 1.70832 1.90733 1.58978 1.45291 1.54692 1.28498 1.08703 1.16475 0.80373 0.82313 0.83092 1.90778 1.51553 1.43569 1.62276 1.42116 1.44639 1.24267 1.05318 1.19572 1.07028 1.22463 1.02194 0.88935 1.26325 0.96689 0.96244 1.00245 1.70001 1.13140 1.42322 1.23717 0.84864 0.78658 0.77631 0.77044 1.17979 1.19036 1.20069 1.20781 0.80892 0.80972 0.89663 1.90578 1.57682 1.68874 1.17936 0.90650 0.92730 0.87401 0.84151 0.81585 0.80898 0.82753 0.70889 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 8.76 71.98 0.63 -3.96 16 2 C 0.17 6.69 1.03 2.24 0.00 6.69 16 3 C -0.14 -4.60 4.83 -19.82 -0.10 -4.69 16 4 C -0.08 -2.12 9.38 22.26 0.21 -1.91 16 5 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 6 C -0.08 -1.31 10.04 22.26 0.22 -1.08 16 7 C -0.16 -3.71 10.03 22.31 0.22 -3.49 16 8 C 0.09 2.99 6.82 22.37 0.15 3.14 16 9 F -0.14 -5.55 13.34 44.97 0.60 -4.95 16 10 N -0.71 -25.97 4.60 -443.26 -2.04 -28.01 16 11 C 0.67 33.66 8.57 179.44 1.54 35.20 16 12 O -0.60 -33.04 17.62 -3.80 -0.07 -33.11 16 13 N -0.43 -24.09 2.69 -598.61 -1.61 -25.71 16 14 C -0.39 -23.17 9.46 83.96 0.79 -22.38 16 15 H 0.09 5.54 7.91 -2.91 -0.02 5.52 16 16 C 0.01 0.74 4.82 84.92 0.41 1.15 16 17 N -0.86 -51.59 11.19 21.65 0.24 -51.35 16 18 Si 1.00 45.09 29.60 68.60 2.03 47.12 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.49 25.61 6.06 87.94 0.53 26.14 16 23 O -0.48 -27.93 13.67 -2.88 -0.04 -27.97 16 24 H 0.07 2.70 6.31 -2.39 -0.02 2.69 16 25 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.14 3.23 6.69 -2.91 -0.02 3.21 16 28 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 29 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 30 H 0.15 2.91 8.06 -2.90 -0.02 2.89 16 31 H 0.44 12.20 8.52 -92.71 -0.79 11.41 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -79.69 282.07 4.35 -75.34 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.39 Total: 15.83 kcal Atomic # 6 Polarization: 27.96 SS G_CDS: 4.84 Total: 32.81 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -3.41 Total: -105.07 kcal Atomic # 8 Polarization: -60.98 SS G_CDS: -0.11 Total: -61.08 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.60 Total: -4.95 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -79.69 4.35 -75.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049418791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.173 kcal (2) G-P(sol) polarization free energy of solvation -79.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds