Wall clock time and date at job start Tue Mar 31 2020 01:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47478 * 2 1 4 4 C 1.32032 * 124.37420 * 89.99886 * 3 2 1 5 5 C 1.44922 * 114.80522 * 180.02562 * 4 3 2 6 6 C 1.39188 * 112.16236 * 0.02562 * 5 4 3 7 7 N 1.35029 * 119.55741 * 180.02562 * 6 5 4 8 8 C 1.29987 * 121.70172 * 359.72984 * 7 6 5 9 9 N 1.35788 * 121.86752 * 0.54038 * 8 7 6 10 10 C 1.46496 * 119.81646 * 179.73989 * 9 8 7 11 11 C 1.52998 * 109.47238 * 269.73050 * 10 9 8 12 12 C 1.50706 * 109.47348 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47154 * 89.99418 * 16 14 12 18 18 H 1.48493 * 109.47010 * 209.99942 * 16 14 12 19 19 H 1.48502 * 109.46736 * 329.99638 * 16 14 12 20 20 C 1.34753 * 120.37225 * 359.46873 * 9 8 7 21 21 O 1.21887 * 120.65081 * 180.27229 * 20 9 8 22 22 S 1.75345 * 124.37728 * 270.02538 * 3 2 1 23 23 H 1.09001 * 109.46774 * 299.99957 * 1 2 3 24 24 H 1.09003 * 109.46756 * 59.99938 * 1 2 3 25 25 H 1.08992 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47215 * 239.99880 * 2 1 3 27 27 H 1.09001 * 109.46668 * 120.00593 * 2 1 3 28 28 H 1.08008 * 122.59773 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.06381 * 180.28475 * 8 7 6 30 30 H 1.09000 * 109.47435 * 149.72954 * 10 9 8 31 31 H 1.09002 * 109.46784 * 29.72590 * 10 9 8 32 32 H 1.09001 * 109.47671 * 59.99927 * 11 10 9 33 33 H 1.08998 * 109.47454 * 299.99925 * 11 10 9 34 34 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2809 2.1235 1.0897 5 6 2.7568 3.4710 0.8488 6 6 2.8570 3.7574 -0.5096 7 7 3.2875 4.9751 -0.9035 8 6 3.6088 5.8968 -0.0450 9 7 3.5401 5.6842 1.2943 10 6 3.9185 6.7532 2.2218 11 6 5.4102 6.6444 2.5441 12 6 5.7997 7.7444 3.4978 13 1 5.0575 8.4507 3.8394 14 6 7.1023 7.8461 3.9381 15 7 8.0048 6.9827 3.5262 16 14 7.5848 9.2091 5.1207 17 1 7.4113 8.7368 6.5178 18 1 9.0052 9.5794 4.8961 19 1 6.7215 10.3948 4.8882 20 6 3.1206 4.4974 1.7752 21 8 3.0524 4.3027 2.9765 22 16 2.3619 2.3543 -1.4472 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.1397 1.7253 2.0838 29 1 3.9436 6.8576 -0.4074 30 1 3.3404 6.6583 3.1410 31 1 3.7156 7.7209 1.7631 32 1 5.9885 6.7393 1.6250 33 1 5.6133 5.6767 3.0027 34 1 8.9212 7.0540 3.8363 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057839662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:44 Heat of formation + Delta-G solvation = 2.722086 kcal Electronic energy + Delta-G solvation = -18569.005921 eV Core-core repulsion = 15592.999483 eV Total energy + Delta-G solvation = -2976.006438 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36159 -37.44336 -37.12001 -35.06651 -33.22098 -32.49740 -30.05372 -28.64894 -25.92947 -24.88823 -23.68577 -22.79873 -21.39024 -20.45492 -18.33294 -17.59267 -16.96358 -16.35075 -15.68493 -15.52864 -14.71386 -14.55226 -14.41476 -14.04698 -13.54761 -13.32156 -13.17543 -13.01649 -12.78793 -12.52027 -12.01541 -11.75317 -11.44812 -11.37306 -11.05010 -10.89481 -10.80732 -10.29542 -10.20529 -9.94673 -9.76126 -9.36591 -9.27623 -8.49834 -8.48323 -7.84420 -6.13845 -4.19214 0.40553 1.16606 1.84877 1.85913 2.22093 2.83291 3.26183 3.32746 3.34770 3.78869 4.26791 4.35488 4.42461 4.80513 4.87661 5.00011 5.08162 5.15897 5.22834 5.39340 5.57783 5.65217 5.67236 5.76544 5.96708 6.00590 6.09610 6.28140 6.43246 6.50577 6.78455 7.39977 7.52842 7.80603 7.82926 8.10632 8.19003 8.85929 9.46123 10.97442 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.003758 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.582959 B = 7448.327304 C = 7749.397896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.203 4.203 4 C -0.061 4.061 5 C -0.239 4.239 6 C 0.088 3.912 7 N -0.525 5.525 8 C 0.399 3.601 9 N -0.521 5.521 10 C 0.092 3.908 11 C 0.013 3.987 12 C -0.526 4.526 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.552 3.448 21 O -0.518 6.518 22 S 0.169 5.831 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.147 0.853 29 H 0.211 0.789 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.026 0.974 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 -9.422 -10.780 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.319 4.319 4 C -0.090 4.090 5 C -0.256 4.256 6 C -0.146 4.146 7 N -0.249 5.249 8 C 0.109 3.891 9 N -0.238 5.238 10 C -0.028 4.028 11 C -0.025 4.025 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C 0.346 3.654 21 O -0.394 6.394 22 S 0.432 5.568 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.165 0.835 29 H 0.227 0.773 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.956 -9.955 -12.312 20.458 hybrid contribution 0.629 0.985 2.907 3.134 sum -12.327 -8.970 -9.404 17.912 Atomic orbital electron populations 1.21812 0.94395 1.01888 1.02601 1.20071 0.96096 0.89176 1.03377 1.23886 1.11031 1.01369 0.95627 1.20373 0.98239 0.90764 0.99592 1.20804 1.14487 0.97632 0.92706 1.23872 0.99312 0.97173 0.94195 1.67934 1.22472 1.00095 1.34415 1.25001 0.86788 0.98334 0.78945 1.47037 1.52474 1.15702 1.08596 1.22591 1.01718 0.86162 0.92337 1.19434 0.86635 0.98783 0.97612 1.20964 0.94776 1.13092 1.27670 0.92125 1.25003 0.96512 0.96268 0.96372 1.69968 1.02921 1.35831 1.44087 0.86489 0.77757 0.81925 0.81232 1.20502 1.21114 1.19684 1.16642 0.78522 0.81544 0.88651 1.90911 1.53689 1.79709 1.15051 1.83823 1.65789 1.00701 1.06532 0.92196 0.92426 0.92070 0.90681 0.89803 0.83525 0.77272 0.88940 0.89448 0.95968 0.95573 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.90 37.16 0.37 -0.78 16 2 C -0.05 -0.42 6.37 -27.88 -0.18 -0.59 16 3 C -0.20 -2.46 5.64 -36.23 -0.20 -2.66 16 4 C -0.06 -0.90 10.13 -38.86 -0.39 -1.29 16 5 C -0.24 -4.19 6.08 -105.07 -0.64 -4.83 16 6 C 0.09 1.41 7.70 -15.79 -0.12 1.29 16 7 N -0.53 -8.23 10.42 -12.60 -0.13 -8.36 16 8 C 0.40 5.90 11.48 -90.12 -1.03 4.87 16 9 N -0.52 -9.38 2.59 -120.43 -0.31 -9.69 16 10 C 0.09 1.77 5.30 -4.04 -0.02 1.75 16 11 C 0.01 0.32 5.30 -27.88 -0.15 0.18 16 12 C -0.53 -14.16 9.11 -34.44 -0.31 -14.47 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 16 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C 0.55 11.11 7.51 -14.44 -0.11 11.00 16 21 O -0.52 -12.07 16.68 5.02 0.08 -11.99 16 22 S 0.17 2.10 23.20 -107.50 -2.49 -0.39 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.15 2.07 8.06 -52.48 -0.42 1.64 16 29 H 0.21 2.20 8.02 -52.48 -0.42 1.78 16 30 H 0.09 1.89 7.43 -51.93 -0.39 1.51 16 31 H 0.09 1.38 8.01 -51.93 -0.42 0.96 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -32.89 311.57 -9.48 -42.37 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.15 Total: -3.20 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.89 Total: -3.95 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.29 Total: -43.54 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.49 Total: -0.39 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.89 -9.48 -42.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057839662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.090 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds