Wall clock time and date at job start Tue Mar 31 2020 01:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47478 * 2 1 4 4 C 1.32032 * 124.37420 * 89.99886 * 3 2 1 5 5 C 1.44922 * 114.80522 * 180.02562 * 4 3 2 6 6 C 1.39188 * 112.16236 * 0.02562 * 5 4 3 7 7 N 1.35029 * 119.55741 * 180.02562 * 6 5 4 8 8 C 1.29987 * 121.70172 * 359.72984 * 7 6 5 9 9 N 1.35788 * 121.86752 * 0.54038 * 8 7 6 10 10 C 1.46496 * 119.81646 * 179.73989 * 9 8 7 11 11 C 1.52998 * 109.47238 * 269.73050 * 10 9 8 12 12 C 1.50706 * 109.47348 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47154 * 89.99418 * 16 14 12 18 18 H 1.48493 * 109.47010 * 209.99942 * 16 14 12 19 19 H 1.48502 * 109.46736 * 329.99638 * 16 14 12 20 20 C 1.34753 * 120.37225 * 359.46873 * 9 8 7 21 21 O 1.21887 * 120.65081 * 180.27229 * 20 9 8 22 22 S 1.75345 * 124.37728 * 270.02538 * 3 2 1 23 23 H 1.09001 * 109.46774 * 299.99957 * 1 2 3 24 24 H 1.09003 * 109.46756 * 59.99938 * 1 2 3 25 25 H 1.08992 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47215 * 239.99880 * 2 1 3 27 27 H 1.09001 * 109.46668 * 120.00593 * 2 1 3 28 28 H 1.08008 * 122.59773 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.06381 * 180.28475 * 8 7 6 30 30 H 1.09000 * 109.47435 * 149.72954 * 10 9 8 31 31 H 1.09002 * 109.46784 * 29.72590 * 10 9 8 32 32 H 1.09001 * 109.47671 * 59.99927 * 11 10 9 33 33 H 1.08998 * 109.47454 * 299.99925 * 11 10 9 34 34 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2809 2.1235 1.0897 5 6 2.7568 3.4710 0.8488 6 6 2.8570 3.7574 -0.5096 7 7 3.2875 4.9751 -0.9035 8 6 3.6088 5.8968 -0.0450 9 7 3.5401 5.6842 1.2943 10 6 3.9185 6.7532 2.2218 11 6 5.4102 6.6444 2.5441 12 6 5.7997 7.7444 3.4978 13 1 5.0575 8.4507 3.8394 14 6 7.1023 7.8461 3.9381 15 7 8.0048 6.9827 3.5262 16 14 7.5848 9.2091 5.1207 17 1 7.4113 8.7368 6.5178 18 1 9.0052 9.5794 4.8961 19 1 6.7215 10.3948 4.8882 20 6 3.1206 4.4974 1.7752 21 8 3.0524 4.3027 2.9765 22 16 2.3619 2.3543 -1.4472 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.1397 1.7253 2.0838 29 1 3.9436 6.8576 -0.4074 30 1 3.3404 6.6583 3.1410 31 1 3.7156 7.7209 1.7631 32 1 5.9885 6.7393 1.6250 33 1 5.6133 5.6767 3.0027 34 1 8.9212 7.0540 3.8363 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057839662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:44 Heat of formation + Delta-G solvation = -16.405496 kcal Electronic energy + Delta-G solvation = -18569.835355 eV Core-core repulsion = 15592.999483 eV Total energy + Delta-G solvation = -2976.835872 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.72931 -38.81678 -38.38586 -36.44411 -35.01887 -33.63609 -31.88131 -29.76451 -27.61260 -26.06510 -25.19003 -23.90840 -23.00990 -21.64371 -19.55719 -18.99571 -18.73206 -17.65079 -17.22241 -16.93259 -16.44185 -15.93646 -15.38476 -15.14793 -14.93598 -14.67543 -14.50983 -14.32661 -14.18040 -13.88023 -13.61307 -12.94767 -12.89506 -12.55583 -12.44327 -12.27129 -12.10806 -11.90991 -11.73266 -11.52094 -11.37196 -11.03073 -10.82157 -10.62493 -9.61342 -9.07566 -8.25607 -6.38495 -0.80135 0.05868 0.49848 0.76022 1.05443 1.39796 1.42990 1.46733 1.54612 2.38831 2.42850 3.09672 3.10358 3.35294 3.70747 3.83510 3.90772 4.16064 4.24450 4.41977 4.42192 4.44704 4.69905 4.72356 4.82652 5.05403 5.06824 5.12329 5.23311 5.31603 5.38663 5.39241 5.58863 5.72839 6.07112 6.52674 6.66792 6.77874 7.32126 8.86804 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.036140 B = 0.003758 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.582959 B = 7448.327304 C = 7749.397896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C -0.181 4.181 4 C -0.093 4.093 5 C -0.264 4.264 6 C 0.063 3.937 7 N -0.523 5.523 8 C 0.396 3.604 9 N -0.525 5.525 10 C 0.109 3.891 11 C 0.022 3.978 12 C -0.540 4.540 13 H 0.075 0.925 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.971 3.029 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.252 1.252 20 C 0.537 3.463 21 O -0.570 6.570 22 S 0.235 5.765 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.255 0.745 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.012 0.988 33 H -0.027 1.027 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.077 -9.181 -12.565 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.298 4.298 4 C -0.121 4.121 5 C -0.282 4.282 6 C -0.170 4.170 7 N -0.246 5.246 8 C 0.108 3.892 9 N -0.242 5.242 10 C -0.011 4.011 11 C -0.016 4.016 12 C -0.579 4.579 13 H 0.094 0.906 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.795 3.205 17 H -0.206 1.206 18 H -0.208 1.208 19 H -0.176 1.176 20 C 0.333 3.667 21 O -0.450 6.450 22 S 0.498 5.502 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.161 0.839 29 H 0.271 0.729 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.030 0.970 33 H -0.009 1.009 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.084 -9.711 -14.160 22.207 hybrid contribution 0.926 0.756 3.330 3.538 sum -13.158 -8.955 -10.829 19.250 Atomic orbital electron populations 1.21809 0.93283 1.03249 1.02183 1.20298 0.96922 0.86857 1.04930 1.24433 1.07858 1.02538 0.94938 1.20410 1.00751 0.90416 1.00552 1.20923 1.15892 0.98309 0.93040 1.24387 0.99569 0.98432 0.94652 1.68027 1.22138 1.00136 1.34300 1.25925 0.85999 0.99838 0.77389 1.46946 1.52659 1.14876 1.09719 1.22254 0.97445 0.88516 0.92929 1.19231 0.90448 0.95550 0.96370 1.21471 0.95216 1.13507 1.27668 0.90646 1.26009 0.96668 0.98824 0.98254 1.70117 1.03344 1.38027 1.45859 0.85357 0.77631 0.79201 0.78327 1.20577 1.20829 1.17603 1.17194 0.78290 0.82640 0.88558 1.90857 1.56349 1.80784 1.17050 1.83604 1.63702 0.97934 1.04973 0.93270 0.92232 0.89879 0.88490 0.88904 0.83896 0.72897 0.90612 0.84878 0.96952 1.00890 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.90 71.98 0.71 -1.17 16 2 C -0.05 -0.75 6.37 29.85 0.19 -0.56 16 3 C -0.18 -4.11 5.64 24.76 0.14 -3.97 16 4 C -0.09 -2.79 10.13 23.06 0.23 -2.56 16 5 C -0.26 -9.52 6.08 -20.15 -0.12 -9.64 16 6 C 0.06 1.97 7.70 84.43 0.65 2.62 16 7 N -0.52 -15.73 10.42 -193.77 -2.02 -17.75 16 8 C 0.40 11.29 11.48 180.17 2.07 13.35 16 9 N -0.53 -19.21 2.59 -653.07 -1.69 -20.90 16 10 C 0.11 4.23 5.30 86.38 0.46 4.69 16 11 C 0.02 1.12 5.30 29.85 0.16 1.28 16 12 C -0.54 -29.32 9.11 25.60 0.23 -29.08 16 13 H 0.08 3.78 7.74 -2.91 -0.02 3.75 16 14 C 0.00 0.04 5.46 84.65 0.46 0.51 16 15 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 16 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 20 C 0.54 22.69 7.51 85.43 0.64 23.33 16 21 O -0.57 -28.55 16.68 -4.95 -0.08 -28.63 16 22 S 0.23 5.29 23.20 -56.49 -1.31 3.98 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.26 4.58 8.02 -2.91 -0.02 4.56 16 30 H 0.08 3.20 7.43 -2.39 -0.02 3.18 16 31 H 0.13 3.91 8.01 -2.39 -0.02 3.89 16 32 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 33 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -75.36 311.57 4.14 -71.22 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.11 Total: 4.35 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.82 Total: -1.20 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -3.42 Total: -94.90 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.08 Total: -28.63 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -1.31 Total: 3.98 kcal Total: -75.36 4.14 -71.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057839662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.810 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds