Wall clock time and date at job start Tue Mar 31 2020 00:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99646 * 2 1 4 4 H 1.48501 * 109.47091 * 269.99702 * 3 2 1 5 5 H 1.48500 * 109.47556 * 29.99953 * 3 2 1 6 6 H 1.48500 * 109.47101 * 149.99991 * 3 2 1 7 7 C 1.37876 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99444 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00507 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47395 * 179.97438 * 9 7 2 11 11 O 1.45200 * 109.47283 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00156 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00032 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00308 * 180.02562 * 12 11 10 15 15 O 1.42901 * 109.47297 * 180.02562 * 14 12 11 16 16 C 1.35601 * 116.99687 * 179.97438 * 15 14 12 17 17 C 1.38683 * 120.17278 * 359.95134 * 16 15 14 18 18 C 1.38050 * 120.11330 * 180.02562 * 17 16 15 19 19 C 1.38635 * 120.45286 * 0.02562 * 18 17 16 20 20 C 1.37674 * 120.33597 * 0.02562 * 19 18 17 21 21 C 1.40012 * 119.88240 * 359.97438 * 20 19 18 22 22 C 1.46785 * 120.22034 * 180.02562 * 21 20 19 23 23 O 1.21293 * 120.00523 * 0.02562 * 22 21 20 24 24 H 0.96991 * 119.99954 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47216 * 59.99707 * 9 7 2 26 26 H 1.09005 * 109.47091 * 300.00305 * 9 7 2 27 27 H 1.09005 * 109.46988 * 59.99800 * 10 9 7 28 28 H 1.08998 * 109.47018 * 299.99847 * 10 9 7 29 29 H 1.08995 * 109.47445 * 59.99794 * 14 12 11 30 30 H 1.09009 * 109.46632 * 299.99906 * 14 12 11 31 31 H 1.07999 * 119.94598 * 0.04542 * 17 16 15 32 32 H 1.07994 * 119.77766 * 180.27601 * 18 17 16 33 33 H 1.08000 * 119.82889 * 179.97438 * 19 18 17 34 34 H 1.08006 * 120.05229 * 179.97438 * 20 19 18 35 35 H 1.08005 * 120.00197 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5195 -4.9195 0.0011 12 6 2.2505 -6.0452 0.0007 13 8 3.4571 -5.9820 0.0003 14 6 1.5665 -7.3880 0.0007 15 8 2.5507 -8.4240 0.0008 16 6 2.0987 -9.7025 0.0013 17 6 0.7359 -9.9600 0.0028 18 6 0.2771 -11.2620 0.0039 19 6 1.1707 -12.3219 0.0041 20 6 2.5274 -12.0876 0.0037 21 6 3.0082 -10.7726 0.0026 22 6 4.4531 -10.5143 0.0016 23 8 5.2351 -11.4415 0.0012 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.9434 -7.4784 -0.8890 30 1 0.9440 -7.4786 0.8910 31 1 0.0324 -9.1406 0.0028 32 1 -0.7852 -11.4563 0.0005 33 1 0.8007 -13.3366 0.0053 34 1 3.2195 -12.9168 0.0042 35 1 4.8201 -9.4985 0.0011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058817486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:26 Heat of formation + Delta-G solvation = -154.983704 kcal Electronic energy + Delta-G solvation = -19973.317776 eV Core-core repulsion = 16515.427080 eV Total energy + Delta-G solvation = -3457.890696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.88687 -41.15973 -39.81809 -38.37592 -37.59637 -35.46209 -32.71948 -32.35712 -31.41095 -29.76826 -26.96129 -25.92601 -23.84586 -22.93929 -22.34039 -21.73623 -19.63197 -18.84491 -18.25719 -18.08532 -17.98405 -17.22981 -17.03224 -16.78780 -16.48917 -15.90728 -15.37614 -15.32522 -15.06968 -14.93847 -14.58527 -14.37265 -13.83213 -13.55948 -13.13758 -13.03677 -12.83410 -12.62426 -12.59277 -12.25379 -12.24336 -11.87210 -11.54080 -11.51014 -11.35640 -10.82423 -10.60974 -10.10359 -9.38449 -8.27574 -6.40134 -0.39413 0.35120 1.00476 1.04114 1.42625 1.42643 1.42944 1.54600 2.32008 2.45595 2.75858 3.07419 3.28717 3.46752 3.74578 3.89323 3.99500 3.99805 4.22358 4.24066 4.26066 4.31042 4.41718 4.58403 4.68866 4.85985 5.07769 5.22002 5.34510 5.46020 5.47484 5.49190 5.62824 5.73845 6.06005 6.09760 6.36630 6.62360 6.73835 7.29746 8.84855 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.038468 B = 0.002679 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.695865 B =10449.781514 C =11151.728407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.092 3.908 11 O -0.355 6.355 12 C 0.456 3.544 13 O -0.530 6.530 14 C 0.073 3.927 15 O -0.312 6.312 16 C 0.173 3.827 17 C -0.225 4.225 18 C -0.035 4.035 19 C -0.169 4.169 20 C -0.034 4.034 21 C -0.245 4.245 22 C 0.393 3.607 23 O -0.504 6.504 24 H 0.268 0.732 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 -23.304 -0.003 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.082 0.918 9 C -0.007 4.007 10 C 0.019 3.981 11 O -0.272 6.272 12 C 0.299 3.701 13 O -0.420 6.420 14 C -0.002 4.002 15 O -0.225 6.225 16 C 0.127 3.873 17 C -0.243 4.243 18 C -0.053 4.053 19 C -0.187 4.187 20 C -0.052 4.052 21 C -0.247 4.247 22 C 0.256 3.744 23 O -0.382 6.382 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.184 0.816 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.073 -23.520 0.001 23.611 hybrid contribution 0.393 1.254 -0.009 1.314 sum -1.680 -22.266 -0.008 22.330 Atomic orbital electron populations 1.70076 1.07696 1.28284 1.50404 1.25910 0.95819 1.03250 0.94126 0.85367 0.78559 0.78010 0.78647 1.19603 1.20414 1.18882 1.21378 0.93707 0.91324 1.52458 0.91805 1.18989 0.94338 0.90291 0.97037 1.23232 0.95121 0.78509 1.01265 1.86455 1.42148 1.15367 1.83184 1.23686 0.86324 0.87585 0.72488 1.90680 1.17153 1.88360 1.45769 1.22231 0.89276 0.79692 1.08982 1.85936 1.35829 1.12704 1.88007 1.19313 0.93315 0.81940 0.92755 1.21688 0.93030 1.00494 1.09074 1.21685 1.01947 0.90944 0.90680 1.21442 0.92056 1.01323 1.03846 1.21452 0.97095 0.94520 0.92169 1.20305 0.95345 0.93084 1.15966 1.24066 0.87677 0.94553 0.68136 1.90481 1.59788 1.49970 1.37917 0.92309 0.97151 0.97134 0.92032 0.92001 0.83800 0.83812 0.81764 0.81609 0.82595 0.84466 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.94 13.29 21.45 0.28 -53.66 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.97 42.73 29.54 68.60 2.03 44.75 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.55 -30.34 9.11 25.60 0.23 -30.11 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.56 5.35 29.84 0.16 1.72 16 10 C 0.09 3.87 5.40 71.98 0.39 4.26 16 11 O -0.35 -12.56 10.22 -51.38 -0.53 -13.09 16 12 C 0.46 13.80 8.03 71.24 0.57 14.38 16 13 O -0.53 -20.01 16.25 28.40 0.46 -19.55 16 14 C 0.07 1.31 5.33 71.24 0.38 1.69 16 15 O -0.31 -6.73 8.85 -70.04 -0.62 -7.35 16 16 C 0.17 3.12 6.71 22.91 0.15 3.28 16 17 C -0.22 -2.62 9.03 22.33 0.20 -2.42 16 18 C -0.03 -0.31 10.03 22.32 0.22 -0.09 16 19 C -0.17 -1.83 10.02 22.23 0.22 -1.60 16 20 C -0.03 -0.56 9.59 22.57 0.22 -0.35 16 21 C -0.25 -4.97 5.88 -20.08 -0.12 -5.08 16 22 C 0.39 9.37 11.19 70.06 0.78 10.15 16 23 O -0.50 -14.74 17.16 -3.07 -0.05 -14.79 16 24 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 2.59 8.13 -2.38 -0.02 2.57 16 28 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 29 H 0.14 1.64 7.66 -2.39 -0.02 1.62 16 30 H 0.14 1.64 7.66 -2.38 -0.02 1.62 16 31 H 0.16 1.03 6.30 -2.91 -0.02 1.01 16 32 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 33 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.14 2.23 7.65 -2.91 -0.02 2.20 16 35 H 0.11 2.55 7.64 -2.91 -0.02 2.53 16 Total: -1.00 -72.51 319.39 6.56 -65.95 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.10 Total: 0.99 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 3.88 Total: -3.26 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.28 Total: -53.66 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.74 Total: -54.78 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -72.51 6.56 -65.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.032 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds