Wall clock time and date at job start Tue Mar 31 2020 00:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47027 * 103.89486 * 3 2 1 5 5 C 1.37104 * 119.99769 * 263.94800 * 4 3 2 6 6 H 1.07996 * 120.00346 * 200.21784 * 5 4 3 7 7 C 1.38951 * 119.99737 * 20.21882 * 5 4 3 8 8 N 1.31411 * 120.00340 * 21.42290 * 7 5 4 9 9 Si 1.86805 * 119.99841 * 201.42345 * 7 5 4 10 10 H 1.48497 * 109.47250 * 59.99927 * 9 7 5 11 11 H 1.48497 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46883 * 299.99630 * 9 7 5 13 13 C 1.34776 * 120.00276 * 83.94963 * 4 3 2 14 14 O 1.21291 * 119.99622 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00022 * 359.97438 * 13 4 3 16 16 O 1.42899 * 109.47512 * 180.02562 * 15 13 4 17 17 C 1.35954 * 117.00257 * 180.02562 * 16 15 13 18 18 C 1.38653 * 120.06339 * 359.97438 * 17 16 15 19 19 C 1.38188 * 119.97060 * 180.02562 * 18 17 16 20 20 C 1.38262 * 120.08997 * 0.02562 * 19 18 17 21 21 C 1.38255 * 120.13094 * 359.97438 * 20 19 18 22 22 C 1.38330 * 120.02876 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.04996 * 180.02562 * 22 21 20 24 24 H 1.08997 * 109.47221 * 343.89447 * 3 2 1 25 25 H 1.09002 * 109.46708 * 223.88766 * 3 2 1 26 26 H 0.96995 * 120.00177 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.47278 * 60.00117 * 15 13 4 28 28 H 1.08998 * 109.47211 * 300.00330 * 15 13 4 29 29 H 1.08000 * 120.01966 * 0.04465 * 18 17 16 30 30 H 1.07998 * 119.95144 * 180.27683 * 19 18 17 31 31 H 1.08003 * 119.92908 * 179.97438 * 20 19 18 32 32 H 1.08001 * 119.98724 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.3326 -1.3408 5 6 3.4431 -0.6683 -2.2112 6 1 4.0923 -0.4556 -3.0477 7 6 2.9595 -1.9564 -2.0171 8 7 1.8770 -2.1504 -1.2978 9 14 3.8482 -3.4124 -2.7786 10 1 5.2388 -3.4695 -2.2609 11 1 3.1361 -4.6667 -2.4256 12 1 3.8757 -3.2582 -4.2554 13 6 3.2043 1.6217 -1.7187 14 8 3.6080 1.8964 -2.8290 15 6 2.8224 2.7218 -0.7622 16 8 3.0230 3.9898 -1.3899 17 6 2.7244 5.0954 -0.6572 18 6 2.2481 4.9624 0.6381 19 6 1.9447 6.0875 1.3810 20 6 2.1150 7.3459 0.8341 21 6 2.5897 7.4831 -0.4571 22 6 2.8950 6.3604 -1.2053 23 9 3.3594 6.4940 -2.4670 24 1 2.9718 -0.9865 0.2851 25 1 2.9710 0.7415 0.7125 26 1 1.5396 -3.0496 -1.1620 27 1 3.4419 2.6568 0.1323 28 1 1.7734 2.6154 -0.4862 29 1 2.1144 3.9801 1.0665 30 1 1.5779 5.9837 2.3914 31 1 1.8767 8.2234 1.4169 32 1 2.7223 8.4672 -0.8818 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060859862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:46 Heat of formation + Delta-G solvation = -44.057270 kcal Electronic energy + Delta-G solvation = -20783.515169 eV Core-core repulsion = 17239.267050 eV Total energy + Delta-G solvation = -3544.248119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.64671 -40.09630 -38.79509 -37.21842 -35.82539 -34.42262 -32.05405 -30.76714 -30.21987 -28.23555 -27.43925 -24.71857 -22.80046 -22.41186 -19.57315 -18.51127 -18.06436 -16.98309 -16.79387 -16.57739 -16.08525 -15.94637 -15.09086 -15.01792 -14.82119 -14.42879 -14.21088 -13.60751 -13.37266 -13.13677 -12.85145 -12.49316 -12.32023 -12.01893 -11.76524 -11.71880 -11.42442 -11.22475 -11.17448 -10.98796 -10.68430 -10.49653 -10.43289 -9.35726 -9.02766 -8.72901 -8.18805 -8.15615 -6.60383 -4.12113 1.04523 1.20788 2.91343 3.06596 3.18166 3.23202 3.42661 3.51270 3.68055 3.83365 4.04720 4.23900 4.56954 4.69368 4.76346 4.82829 4.99441 5.04654 5.12070 5.23955 5.29418 5.42883 5.51542 5.89286 5.91193 5.97039 6.09280 6.27618 6.32238 6.58371 7.31708 7.38684 7.77553 8.16447 8.60300 8.86924 9.04983 9.56704 10.45949 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.004486 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.574257 B = 6240.122177 C = 6977.745903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.239 3.761 3 C 0.219 3.781 4 N -0.437 5.437 5 C -0.316 4.316 6 H 0.110 0.890 7 C 0.035 3.965 8 N -0.875 5.875 9 Si 0.931 3.069 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.456 3.544 14 O -0.546 6.546 15 C 0.045 3.955 16 O -0.276 6.276 17 C 0.105 3.895 18 C -0.187 4.187 19 C -0.089 4.089 20 C -0.138 4.138 21 C -0.118 4.118 22 C 0.067 3.933 23 F -0.130 7.130 24 H 0.129 0.871 25 H 0.084 0.916 26 H 0.276 0.724 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 11.989 9.667 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.079 4.079 3 C 0.091 3.909 4 N -0.159 5.159 5 C -0.442 4.442 6 H 0.128 0.872 7 C -0.170 4.170 8 N -0.513 5.513 9 Si 0.757 3.243 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.243 3.757 14 O -0.426 6.426 15 C -0.034 4.034 16 O -0.188 6.188 17 C 0.058 3.942 18 C -0.206 4.206 19 C -0.107 4.107 20 C -0.156 4.156 21 C -0.137 4.137 22 C 0.047 3.953 23 F -0.109 7.109 24 H 0.147 0.853 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.917 11.928 8.881 14.899 hybrid contribution 0.541 -1.051 -0.293 1.218 sum 1.458 10.877 8.588 13.935 Atomic orbital electron populations 1.80921 1.13477 1.11277 1.08719 1.29269 0.95345 0.90982 0.92337 1.18760 0.81774 1.04321 0.86051 1.43523 1.56927 1.03967 1.11480 1.19685 1.28118 0.86086 1.10346 0.87233 1.25325 0.94709 0.99434 0.97496 1.69824 1.17905 1.23550 1.40011 0.85907 0.79350 0.79309 0.79728 1.19544 1.20939 1.19670 1.19531 0.85213 0.82973 0.87948 1.90615 1.48667 1.81955 1.21370 1.22735 1.01821 0.82134 0.96727 1.86273 1.80802 1.11855 1.39855 1.19223 0.96860 0.86815 0.91345 1.21260 1.05116 1.00816 0.93392 1.21007 0.98110 0.91743 0.99839 1.20875 1.02107 0.97803 0.94845 1.20993 1.00529 0.97228 0.94922 1.17032 1.05377 0.91343 0.81554 1.91524 1.86358 1.96424 1.36576 0.85295 0.89828 0.91383 0.89803 0.90129 0.84337 0.85111 0.85070 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.55 18.54 42.16 0.78 -9.77 16 2 C 0.24 4.98 12.82 -20.76 -0.27 4.72 16 3 C 0.22 4.02 4.91 -6.83 -0.03 3.98 16 4 N -0.44 -9.88 2.60 -117.94 -0.31 -10.19 16 5 C -0.32 -7.94 9.27 -14.93 -0.14 -8.08 16 6 H 0.11 2.92 7.43 -52.49 -0.39 2.53 16 7 C 0.03 0.83 4.84 -17.47 -0.08 0.75 16 8 N -0.87 -21.43 9.58 55.50 0.53 -20.89 16 9 Si 0.93 19.13 29.60 -169.99 -5.03 14.09 16 10 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 C 0.46 10.45 7.64 -10.99 -0.08 10.37 16 14 O -0.55 -14.95 16.17 -14.36 -0.23 -15.19 16 15 C 0.04 0.78 3.83 36.00 0.14 0.92 16 16 O -0.28 -5.35 9.53 -39.50 -0.38 -5.73 16 17 C 0.11 1.66 6.69 -39.18 -0.26 1.40 16 18 C -0.19 -2.31 9.04 -39.45 -0.36 -2.67 16 19 C -0.09 -0.88 10.04 -39.59 -0.40 -1.28 16 20 C -0.14 -1.30 10.04 -39.57 -0.40 -1.69 16 21 C -0.12 -1.31 10.02 -39.54 -0.40 -1.71 16 22 C 0.07 1.00 7.31 -39.30 -0.29 0.72 16 23 F -0.13 -2.23 17.11 2.25 0.04 -2.19 16 24 H 0.13 2.40 6.63 -51.93 -0.34 2.05 16 25 H 0.08 1.09 6.69 -51.93 -0.35 0.74 16 26 H 0.28 6.56 8.31 -40.82 -0.34 6.23 16 27 H 0.08 1.14 6.94 -51.93 -0.36 0.78 16 28 H 0.08 1.33 7.01 -51.93 -0.36 0.97 16 29 H 0.14 1.49 6.30 -52.49 -0.33 1.16 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 294.39 15.07 4.44 4.44 Total: -1.00 -32.34 294.39 -5.26 -37.61 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -2.54 Total: 0.40 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -2.57 Total: 7.42 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 1.01 Total: -40.85 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.61 Total: -20.92 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.34 -5.26 -37.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.452 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds