Wall clock time and date at job start Tue Mar 31 2020 00:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47027 * 103.89486 * 3 2 1 5 5 C 1.37104 * 119.99769 * 263.94800 * 4 3 2 6 6 H 1.07996 * 120.00346 * 200.21784 * 5 4 3 7 7 C 1.38951 * 119.99737 * 20.21882 * 5 4 3 8 8 N 1.31411 * 120.00340 * 21.42290 * 7 5 4 9 9 Si 1.86805 * 119.99841 * 201.42345 * 7 5 4 10 10 H 1.48497 * 109.47250 * 59.99927 * 9 7 5 11 11 H 1.48497 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46883 * 299.99630 * 9 7 5 13 13 C 1.34776 * 120.00276 * 83.94963 * 4 3 2 14 14 O 1.21291 * 119.99622 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00022 * 359.97438 * 13 4 3 16 16 O 1.42899 * 109.47512 * 180.02562 * 15 13 4 17 17 C 1.35954 * 117.00257 * 180.02562 * 16 15 13 18 18 C 1.38653 * 120.06339 * 359.97438 * 17 16 15 19 19 C 1.38188 * 119.97060 * 180.02562 * 18 17 16 20 20 C 1.38262 * 120.08997 * 0.02562 * 19 18 17 21 21 C 1.38255 * 120.13094 * 359.97438 * 20 19 18 22 22 C 1.38330 * 120.02876 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.04996 * 180.02562 * 22 21 20 24 24 H 1.08997 * 109.47221 * 343.89447 * 3 2 1 25 25 H 1.09002 * 109.46708 * 223.88766 * 3 2 1 26 26 H 0.96995 * 120.00177 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.47278 * 60.00117 * 15 13 4 28 28 H 1.08998 * 109.47211 * 300.00330 * 15 13 4 29 29 H 1.08000 * 120.01966 * 0.04465 * 18 17 16 30 30 H 1.07998 * 119.95144 * 180.27683 * 19 18 17 31 31 H 1.08003 * 119.92908 * 179.97438 * 20 19 18 32 32 H 1.08001 * 119.98724 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.3326 -1.3408 5 6 3.4431 -0.6683 -2.2112 6 1 4.0923 -0.4556 -3.0477 7 6 2.9595 -1.9564 -2.0171 8 7 1.8770 -2.1504 -1.2978 9 14 3.8482 -3.4124 -2.7786 10 1 5.2388 -3.4695 -2.2609 11 1 3.1361 -4.6667 -2.4256 12 1 3.8757 -3.2582 -4.2554 13 6 3.2043 1.6217 -1.7187 14 8 3.6080 1.8964 -2.8290 15 6 2.8224 2.7218 -0.7622 16 8 3.0230 3.9898 -1.3899 17 6 2.7244 5.0954 -0.6572 18 6 2.2481 4.9624 0.6381 19 6 1.9447 6.0875 1.3810 20 6 2.1150 7.3459 0.8341 21 6 2.5897 7.4831 -0.4571 22 6 2.8950 6.3604 -1.2053 23 9 3.3594 6.4940 -2.4670 24 1 2.9718 -0.9865 0.2851 25 1 2.9710 0.7415 0.7125 26 1 1.5396 -3.0496 -1.1620 27 1 3.4419 2.6568 0.1323 28 1 1.7734 2.6154 -0.4862 29 1 2.1144 3.9801 1.0665 30 1 1.5779 5.9837 2.3914 31 1 1.8767 8.2234 1.4169 32 1 2.7223 8.4672 -0.8818 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060859862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:43 Heat of formation + Delta-G solvation = -64.115401 kcal Electronic energy + Delta-G solvation = -20784.384955 eV Core-core repulsion = 17239.267050 eV Total energy + Delta-G solvation = -3545.117905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.81162 -41.36121 -40.29502 -38.36112 -37.56401 -36.20527 -33.89841 -31.66320 -31.30367 -29.66900 -28.98671 -26.42337 -23.82663 -23.39258 -21.18926 -19.86627 -19.62218 -18.33685 -18.08257 -17.92073 -17.42824 -17.30628 -16.55465 -16.35155 -16.10544 -15.69855 -15.34551 -15.13129 -14.92537 -14.74349 -14.06490 -13.89786 -13.63826 -13.47409 -13.29120 -13.13740 -12.90265 -12.62835 -12.40130 -12.32174 -12.13951 -12.09360 -12.02700 -11.17532 -10.55069 -10.00199 -9.91783 -9.22055 -8.46475 -6.04851 0.15667 0.28850 1.35603 1.46040 1.54248 1.64873 1.80872 2.09553 2.20341 2.36395 2.63998 2.93969 3.06152 3.29816 3.49941 3.67322 3.82376 3.91819 4.03705 4.09689 4.31321 4.37059 4.50814 4.56398 4.82820 5.02382 5.12767 5.29241 5.44227 5.45012 5.69413 5.93625 6.23342 6.37402 6.96209 7.03250 7.22465 7.78109 8.57243 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.004486 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.574257 B = 6240.122177 C = 6977.745903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.253 3.747 3 C 0.216 3.784 4 N -0.443 5.443 5 C -0.346 4.346 6 H 0.081 0.919 7 C 0.012 3.988 8 N -0.887 5.887 9 Si 0.989 3.011 10 H -0.257 1.257 11 H -0.277 1.277 12 H -0.285 1.285 13 C 0.443 3.557 14 O -0.607 6.607 15 C 0.058 3.942 16 O -0.320 6.320 17 C 0.068 3.932 18 C -0.189 4.189 19 C -0.080 4.080 20 C -0.123 4.123 21 C -0.114 4.114 22 C 0.026 3.974 23 F -0.156 7.156 24 H 0.130 0.870 25 H 0.147 0.853 26 H 0.277 0.723 27 H 0.130 0.870 28 H 0.093 0.907 29 H 0.156 0.844 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 12.911 12.909 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.065 4.065 3 C 0.090 3.910 4 N -0.164 5.164 5 C -0.473 4.473 6 H 0.099 0.901 7 C -0.191 4.191 8 N -0.525 5.525 9 Si 0.813 3.187 10 H -0.181 1.181 11 H -0.202 1.202 12 H -0.211 1.211 13 C 0.233 3.767 14 O -0.492 6.492 15 C -0.020 4.020 16 O -0.233 6.233 17 C 0.022 3.978 18 C -0.207 4.207 19 C -0.097 4.097 20 C -0.141 4.141 21 C -0.132 4.132 22 C 0.006 3.994 23 F -0.135 7.135 24 H 0.147 0.853 25 H 0.165 0.835 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.110 0.890 29 H 0.173 0.827 30 H 0.187 0.813 31 H 0.190 0.810 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.607 12.851 12.177 17.714 hybrid contribution 0.583 -1.236 -1.245 1.848 sum 1.190 11.615 10.933 15.995 Atomic orbital electron populations 1.80927 1.14674 1.12684 1.09829 1.29704 0.95773 0.89792 0.91235 1.19209 0.80235 1.06510 0.85041 1.43685 1.56353 1.03658 1.12723 1.19576 1.29059 0.87621 1.11051 0.90147 1.25918 0.94843 1.00763 0.97591 1.69899 1.18205 1.24018 1.40355 0.85053 0.79054 0.76585 0.78015 1.18139 1.20160 1.21109 1.20495 0.83881 0.84162 0.88194 1.90567 1.51231 1.83097 1.24276 1.22591 1.03093 0.80287 0.96024 1.86191 1.82159 1.12993 1.41959 1.19586 0.99530 0.85769 0.92909 1.21553 1.04405 1.02761 0.92015 1.21522 0.96181 0.90946 1.01082 1.21422 0.99453 0.99295 0.93910 1.21359 0.99466 0.96931 0.95452 1.17667 1.07612 0.92730 0.81377 1.91445 1.87060 1.96593 1.38418 0.85261 0.83547 0.91238 0.85212 0.88959 0.82683 0.81258 0.80973 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.30 18.54 20.01 0.37 -21.93 16 2 C 0.25 10.18 12.82 89.44 1.15 11.32 16 3 C 0.22 7.53 4.91 84.57 0.42 7.94 16 4 N -0.44 -20.11 2.60 -645.42 -1.68 -21.79 16 5 C -0.35 -17.82 9.27 84.04 0.78 -17.04 16 6 H 0.08 4.53 7.43 -2.91 -0.02 4.51 16 7 C 0.01 0.58 4.84 84.93 0.41 0.99 16 8 N -0.89 -42.94 9.58 21.66 0.21 -42.73 16 9 Si 0.99 39.18 29.60 68.60 2.03 41.21 16 10 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 11 H -0.28 -10.57 7.11 99.48 0.71 -9.87 16 12 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 13 C 0.44 20.73 7.64 87.65 0.67 21.39 16 14 O -0.61 -35.13 16.17 15.97 0.26 -34.87 16 15 C 0.06 1.99 3.83 71.23 0.27 2.26 16 16 O -0.32 -12.69 9.53 -73.99 -0.71 -13.40 16 17 C 0.07 2.13 6.69 22.53 0.15 2.28 16 18 C -0.19 -4.13 9.04 22.36 0.20 -3.92 16 19 C -0.08 -1.20 10.04 22.26 0.22 -0.98 16 20 C -0.12 -1.75 10.04 22.28 0.22 -1.53 16 21 C -0.11 -2.28 10.02 22.30 0.22 -2.06 16 22 C 0.03 0.78 7.31 22.45 0.16 0.94 16 23 F -0.16 -5.69 17.11 44.97 0.77 -4.92 16 24 H 0.13 4.57 6.63 -2.39 -0.02 4.55 16 25 H 0.15 3.21 6.69 -2.39 -0.02 3.20 16 26 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 27 H 0.13 3.12 6.94 -2.38 -0.02 3.10 16 28 H 0.09 2.90 7.01 -2.39 -0.02 2.89 16 29 H 0.16 2.73 6.30 -2.91 -0.02 2.71 16 30 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -76.20 294.39 7.31 -68.89 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.18 Total: 7.92 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 4.88 Total: 21.61 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.10 Total: -86.45 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -0.45 Total: -48.27 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.77 Total: -4.92 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -76.20 7.31 -68.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.773 kcal (2) G-P(sol) polarization free energy of solvation -76.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds