Wall clock time and date at job start Tue Mar 31 2020 01:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50699 * 109.47220 * 2 1 4 4 S 1.70612 * 124.51556 * 269.97872 * 3 2 1 5 5 C 1.75822 * 91.56895 * 180.02562 * 4 3 2 6 6 C 1.46460 * 125.46214 * 179.97438 * 5 4 3 7 7 O 1.21745 * 119.99784 * 172.79565 * 6 5 4 8 8 N 1.34772 * 120.00210 * 352.79943 * 6 5 4 9 9 C 1.36887 * 119.99754 * 3.83183 * 8 6 5 10 10 H 1.08001 * 119.99930 * 307.88827 * 9 8 6 11 11 C 1.39005 * 120.00189 * 127.89313 * 9 8 6 12 12 N 1.31402 * 120.00161 * 4.06202 * 11 9 8 13 13 Si 1.86802 * 120.00215 * 184.06050 * 11 9 8 14 14 H 1.48504 * 109.46608 * 59.99780 * 13 11 9 15 15 H 1.48491 * 109.47356 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47062 * 300.00213 * 13 11 9 17 17 C 1.46501 * 120.00203 * 183.82326 * 8 6 5 18 18 C 1.47205 * 109.46653 * 84.65552 * 17 8 6 19 19 N 8.60417 * 126.46666 * 337.18430 * 2 1 3 20 20 C 1.36771 * 109.07589 * 359.76025 * 5 4 3 21 21 C 1.33846 * 124.51431 * 89.99839 * 3 2 1 22 22 C 1.50694 * 122.44589 * 359.96393 * 21 3 2 23 23 H 1.08996 * 109.47022 * 299.99717 * 1 2 3 24 24 H 1.09001 * 109.47027 * 59.99933 * 1 2 3 25 25 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46722 * 240.00012 * 2 1 3 27 27 H 1.08996 * 109.47312 * 120.00419 * 2 1 3 28 28 H 0.96998 * 120.00312 * 180.02562 * 12 11 9 29 29 H 1.08999 * 109.47459 * 204.65575 * 17 8 6 30 30 H 1.09000 * 109.47335 * 324.65963 * 17 8 6 31 31 H 1.07994 * 123.36210 * 180.24412 * 20 5 4 32 32 H 1.08994 * 109.47794 * 89.99208 * 22 21 3 33 33 H 1.09008 * 109.47126 * 329.99345 * 22 21 3 34 34 H 1.09000 * 109.47084 * 209.99580 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3552 2.3321 -1.4058 5 6 2.8474 3.7230 -0.4496 6 6 3.3024 5.0066 -0.9885 7 8 3.4950 5.9472 -0.2399 8 7 3.5079 5.1465 -2.3131 9 6 3.2167 4.1142 -3.1637 10 1 3.6169 3.1292 -2.9742 11 6 2.4061 4.3338 -4.2713 12 7 1.9845 5.5475 -4.5467 13 14 1.9159 2.9036 -5.3683 14 1 1.1673 1.9006 -4.5689 15 1 1.0548 3.3987 -6.4721 16 1 3.1355 2.2741 -5.9355 17 6 4.0427 6.4034 -2.8427 18 6 5.5119 6.3883 -2.7521 19 7 6.6440 6.3781 -2.6832 20 6 2.7328 3.4158 0.8782 21 6 2.2852 2.1358 1.1029 22 6 2.0878 1.5801 2.4896 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.4185 5.7007 -5.3194 29 1 3.7441 6.5148 -3.8851 30 1 3.6514 7.2383 -2.2614 31 1 2.9727 4.1087 1.6710 32 1 3.0088 1.1029 2.8244 33 1 1.2825 0.8456 2.4755 34 1 1.8292 2.3897 3.1721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060859922.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:49 Heat of formation + Delta-G solvation = 9.778931 kcal Electronic energy + Delta-G solvation = -19176.709681 eV Core-core repulsion = 16201.009251 eV Total energy + Delta-G solvation = -2975.700430 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.99388 -37.83291 -35.82618 -34.82822 -33.31907 -31.94405 -30.00752 -28.13411 -26.66837 -25.29380 -23.48300 -21.81566 -19.81750 -18.64295 -17.36644 -17.31157 -16.07015 -15.52093 -15.07446 -14.73531 -14.10547 -14.05209 -13.84208 -13.40599 -13.14212 -12.93640 -12.63806 -12.30489 -12.17137 -12.08016 -11.88328 -11.68722 -11.49036 -11.42318 -11.24876 -11.04170 -10.92993 -10.79162 -10.64041 -10.51336 -9.88360 -9.21071 -8.94069 -8.01982 -7.70906 -7.56798 -6.78887 -4.69849 1.35617 2.43622 2.88592 3.00324 3.02897 3.04726 3.05778 3.36209 3.60922 3.83652 4.16037 4.57602 4.64918 5.09772 5.15704 5.24308 5.47467 5.55605 5.66693 5.82167 5.89824 5.94890 6.00304 6.07632 6.16937 6.26099 6.34460 6.39345 6.66835 6.72776 6.98967 7.05422 7.15677 7.57439 7.91487 8.33677 8.63160 9.03777 9.49155 10.23518 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.008054 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.160550 B = 3475.904516 C = 4822.548767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C -0.281 4.281 4 S 0.290 5.710 5 C -0.227 4.227 6 C 0.559 3.441 7 O -0.581 6.581 8 N -0.439 5.439 9 C -0.351 4.351 10 H 0.100 0.900 11 C 0.069 3.931 12 N -0.848 5.848 13 Si 0.906 3.094 14 H -0.256 1.256 15 H -0.275 1.275 16 H -0.264 1.264 17 C 0.203 3.797 18 C 0.216 3.784 19 N -0.472 5.472 20 C -0.087 4.087 21 C -0.129 4.129 22 C -0.089 4.089 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.282 0.718 29 H 0.148 0.852 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 -8.736 3.272 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.399 4.399 4 S 0.566 5.434 5 C -0.349 4.349 6 C 0.349 3.651 7 O -0.466 6.466 8 N -0.159 5.159 9 C -0.484 4.484 10 H 0.117 0.883 11 C -0.142 4.142 12 N -0.480 5.480 13 Si 0.730 3.270 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.189 1.189 17 C 0.077 3.923 18 C -0.102 4.102 19 N -0.151 5.151 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.147 4.147 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.165 0.835 30 H 0.121 0.879 31 H 0.154 0.846 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.671 -8.505 2.050 9.488 hybrid contribution -0.582 -0.288 0.956 1.156 sum -4.253 -8.793 3.006 10.220 Atomic orbital electron populations 1.21774 0.95048 1.01132 1.02455 1.19933 0.95603 0.90869 1.02107 1.25322 1.08943 1.02293 1.03332 1.84393 1.56352 1.00258 1.02391 1.24414 1.13618 0.99696 0.97123 1.17412 0.78858 0.86027 0.82808 1.90699 1.56592 1.40422 1.58852 1.42975 1.55612 1.13036 1.04310 1.19285 1.31346 0.89826 1.07972 0.88293 1.25657 0.93390 0.97488 0.97693 1.69610 1.30788 1.20321 1.27313 0.86269 0.79757 0.81241 0.79767 1.17994 1.19975 1.18858 1.19162 0.78069 0.89833 1.05281 1.30549 0.96350 0.92053 0.91297 1.80908 1.13932 1.09288 1.11012 1.20350 1.00750 0.95806 0.95154 1.18376 1.05955 0.94245 0.95570 1.20424 1.01032 1.00312 0.92980 0.92560 0.92382 0.92755 0.91494 0.91219 0.90687 0.83465 0.87857 0.84558 0.92305 0.92273 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.90 37.16 0.37 -1.34 16 2 C -0.05 -0.60 5.72 -27.88 -0.16 -0.76 16 3 C -0.28 -4.61 5.53 -35.85 -0.20 -4.81 16 4 S 0.29 5.45 18.36 -107.50 -1.97 3.48 16 5 C -0.23 -4.89 6.30 -36.80 -0.23 -5.12 16 6 C 0.56 13.43 7.54 -12.95 -0.10 13.33 16 7 O -0.58 -15.02 16.49 5.15 0.08 -14.93 16 8 N -0.44 -10.23 2.44 -119.50 -0.29 -10.52 16 9 C -0.35 -7.92 6.69 -15.01 -0.10 -8.02 16 10 H 0.10 2.19 5.54 -34.33 -0.19 2.00 16 11 C 0.07 1.51 5.34 -17.45 -0.09 1.42 16 12 N -0.85 -19.09 11.27 55.50 0.63 -18.47 16 13 Si 0.91 16.95 29.56 -169.99 -5.02 11.92 16 14 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 15 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 16 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 17 C 0.20 4.35 5.35 -6.83 -0.04 4.32 16 18 C 0.22 4.75 15.71 -20.81 -0.33 4.42 16 19 N -0.47 -10.87 18.53 42.09 0.78 -10.09 16 20 C -0.09 -1.69 9.81 -40.40 -0.40 -2.09 16 21 C -0.13 -2.17 5.78 -106.46 -0.62 -2.78 16 22 C -0.09 -1.17 9.55 36.00 0.34 -0.82 16 23 H 0.06 0.66 7.80 -51.93 -0.41 0.25 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 27 H 0.07 0.81 7.25 -51.93 -0.38 0.44 16 28 H 0.28 5.98 8.31 -40.82 -0.34 5.64 16 29 H 0.15 3.13 5.85 -51.93 -0.30 2.83 16 30 H 0.10 2.14 7.53 -51.93 -0.39 1.75 16 31 H 0.14 2.58 8.06 -52.49 -0.42 2.16 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.69 6.86 -51.92 -0.36 0.34 16 34 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -26.45 309.05 -6.38 -32.82 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.69 Total: 3.39 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.54 Total: -2.26 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 1.11 Total: -39.08 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.08 Total: -14.93 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.02 Total: 11.92 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.97 Total: 3.48 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.45 -6.38 -32.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859922.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.603 kcal (2) G-P(sol) polarization free energy of solvation -26.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds