Wall clock time and date at job start Tue Mar 31 2020 01:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50699 * 109.47220 * 2 1 4 4 S 1.70612 * 124.51556 * 269.97872 * 3 2 1 5 5 C 1.75822 * 91.56895 * 180.02562 * 4 3 2 6 6 C 1.46460 * 125.46214 * 179.97438 * 5 4 3 7 7 O 1.21745 * 119.99784 * 172.79565 * 6 5 4 8 8 N 1.34772 * 120.00210 * 352.79943 * 6 5 4 9 9 C 1.36887 * 119.99754 * 3.83183 * 8 6 5 10 10 H 1.08001 * 119.99930 * 307.88827 * 9 8 6 11 11 C 1.39005 * 120.00189 * 127.89313 * 9 8 6 12 12 N 1.31402 * 120.00161 * 4.06202 * 11 9 8 13 13 Si 1.86802 * 120.00215 * 184.06050 * 11 9 8 14 14 H 1.48504 * 109.46608 * 59.99780 * 13 11 9 15 15 H 1.48491 * 109.47356 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47062 * 300.00213 * 13 11 9 17 17 C 1.46501 * 120.00203 * 183.82326 * 8 6 5 18 18 C 1.47205 * 109.46653 * 84.65552 * 17 8 6 19 19 N 8.60417 * 126.46666 * 337.18430 * 2 1 3 20 20 C 1.36771 * 109.07589 * 359.76025 * 5 4 3 21 21 C 1.33846 * 124.51431 * 89.99839 * 3 2 1 22 22 C 1.50694 * 122.44589 * 359.96393 * 21 3 2 23 23 H 1.08996 * 109.47022 * 299.99717 * 1 2 3 24 24 H 1.09001 * 109.47027 * 59.99933 * 1 2 3 25 25 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46722 * 240.00012 * 2 1 3 27 27 H 1.08996 * 109.47312 * 120.00419 * 2 1 3 28 28 H 0.96998 * 120.00312 * 180.02562 * 12 11 9 29 29 H 1.08999 * 109.47459 * 204.65575 * 17 8 6 30 30 H 1.09000 * 109.47335 * 324.65963 * 17 8 6 31 31 H 1.07994 * 123.36210 * 180.24412 * 20 5 4 32 32 H 1.08994 * 109.47794 * 89.99208 * 22 21 3 33 33 H 1.09008 * 109.47126 * 329.99345 * 22 21 3 34 34 H 1.09000 * 109.47084 * 209.99580 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3552 2.3321 -1.4058 5 6 2.8474 3.7230 -0.4496 6 6 3.3024 5.0066 -0.9885 7 8 3.4950 5.9472 -0.2399 8 7 3.5079 5.1465 -2.3131 9 6 3.2167 4.1142 -3.1637 10 1 3.6169 3.1292 -2.9742 11 6 2.4061 4.3338 -4.2713 12 7 1.9845 5.5475 -4.5467 13 14 1.9159 2.9036 -5.3683 14 1 1.1673 1.9006 -4.5689 15 1 1.0548 3.3987 -6.4721 16 1 3.1355 2.2741 -5.9355 17 6 4.0427 6.4034 -2.8427 18 6 5.5119 6.3883 -2.7521 19 7 6.6440 6.3781 -2.6832 20 6 2.7328 3.4158 0.8782 21 6 2.2852 2.1358 1.1029 22 6 2.0878 1.5801 2.4896 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.4185 5.7007 -5.3194 29 1 3.7441 6.5148 -3.8851 30 1 3.6514 7.2383 -2.2614 31 1 2.9727 4.1087 1.6710 32 1 3.0088 1.1029 2.8244 33 1 1.2825 0.8456 2.4755 34 1 1.8292 2.3897 3.1721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060859922.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:47 Heat of formation + Delta-G solvation = -2.976926 kcal Electronic energy + Delta-G solvation = -19177.262816 eV Core-core repulsion = 16201.009251 eV Total energy + Delta-G solvation = -2976.253565 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.73952 -39.23077 -37.63870 -36.61853 -34.49827 -33.67820 -31.33313 -29.70248 -27.92702 -26.99088 -24.88679 -23.05067 -21.47434 -20.23567 -18.99747 -18.79520 -17.73864 -17.13334 -16.71549 -16.26834 -15.68661 -15.47961 -15.07832 -14.89414 -14.72122 -14.36688 -13.94551 -13.87470 -13.78872 -13.33731 -13.28340 -13.10136 -12.91963 -12.90079 -12.78432 -12.38082 -12.31861 -12.11361 -12.00315 -11.83726 -11.38655 -10.87580 -10.66140 -9.73059 -9.23258 -9.00075 -8.46422 -6.43885 -0.15164 0.95098 1.41302 1.46395 1.53009 1.56759 1.60625 1.68923 1.79502 2.26849 2.43560 2.87891 2.95720 3.38201 3.96908 4.20605 4.27657 4.45026 4.52558 4.60295 4.63540 4.66634 4.91741 4.96370 4.98466 5.07959 5.14079 5.14747 5.26845 5.34221 5.42918 5.64508 5.80989 5.83208 6.20607 6.52760 6.91731 7.25884 7.72766 8.57635 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.008054 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.160550 B = 3475.904516 C = 4822.548767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.259 4.259 4 S 0.286 5.714 5 C -0.276 4.276 6 C 0.546 3.454 7 O -0.616 6.616 8 N -0.445 5.445 9 C -0.368 4.368 10 H 0.103 0.897 11 C 0.040 3.960 12 N -0.871 5.871 13 Si 0.953 3.047 14 H -0.242 1.242 15 H -0.273 1.273 16 H -0.261 1.261 17 C 0.207 3.793 18 C 0.227 3.773 19 N -0.489 5.489 20 C -0.082 4.082 21 C -0.140 4.140 22 C -0.086 4.086 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.286 0.714 29 H 0.151 0.849 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -11.537 3.683 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.378 4.378 4 S 0.561 5.439 5 C -0.396 4.396 6 C 0.337 3.663 7 O -0.504 6.504 8 N -0.164 5.164 9 C -0.500 4.500 10 H 0.120 0.880 11 C -0.169 4.169 12 N -0.505 5.505 13 Si 0.773 3.227 14 H -0.166 1.166 15 H -0.197 1.197 16 H -0.186 1.186 17 C 0.081 3.919 18 C -0.091 4.091 19 N -0.169 5.169 20 C -0.117 4.117 21 C -0.151 4.151 22 C -0.144 4.144 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.168 0.832 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.788 -11.299 2.436 12.511 hybrid contribution -0.257 0.524 0.914 1.085 sum -5.045 -10.775 3.350 12.360 Atomic orbital electron populations 1.21770 0.93786 1.02785 1.01887 1.20141 0.96558 0.88369 1.03755 1.25650 1.06814 1.03677 1.01655 1.84098 1.56679 0.99580 1.03523 1.24363 1.16785 1.00035 0.98433 1.17881 0.78640 0.86824 0.82929 1.90645 1.58387 1.41779 1.59551 1.43169 1.55273 1.13531 1.04427 1.19516 1.32204 0.89995 1.08273 0.88045 1.26281 0.92911 0.99393 0.98295 1.69664 1.31232 1.21669 1.27899 0.85561 0.79641 0.79058 0.78403 1.16567 1.19714 1.18572 1.19191 0.77638 0.89755 1.05365 1.30626 0.96335 0.91471 0.90692 1.80898 1.14358 1.09921 1.11692 1.20604 0.99741 0.96988 0.94379 1.18691 1.05490 0.93140 0.97792 1.20487 1.02474 1.00960 0.90487 0.92549 0.93607 0.90042 0.90480 0.88966 0.90320 0.83161 0.87574 0.84972 0.90965 0.90220 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.90 71.99 0.71 -2.10 16 2 C -0.05 -1.09 5.72 29.85 0.17 -0.91 16 3 C -0.26 -7.86 5.53 24.69 0.14 -7.73 16 4 S 0.29 10.48 18.36 -56.49 -1.04 9.44 16 5 C -0.28 -12.01 6.30 24.07 0.15 -11.86 16 6 C 0.55 27.05 7.54 86.39 0.65 27.70 16 7 O -0.62 -33.10 16.49 -4.49 -0.07 -33.18 16 8 N -0.44 -21.22 2.44 -650.17 -1.59 -22.80 16 9 C -0.37 -16.73 6.69 84.09 0.56 -16.17 16 10 H 0.10 4.50 5.54 -14.45 -0.08 4.42 16 11 C 0.04 1.75 5.34 84.94 0.45 2.20 16 12 N -0.87 -39.40 11.27 21.67 0.24 -39.15 16 13 Si 0.95 33.61 29.56 68.60 2.03 35.63 16 14 H -0.24 -7.96 7.11 99.48 0.71 -7.25 16 15 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 16 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 17 C 0.21 9.12 5.35 84.58 0.45 9.57 16 18 C 0.23 10.18 15.71 89.46 1.41 11.58 16 19 N -0.49 -22.79 18.53 19.99 0.37 -22.42 16 20 C -0.08 -3.18 9.81 21.74 0.21 -2.97 16 21 C -0.14 -4.41 5.78 -21.05 -0.12 -4.53 16 22 C -0.09 -1.96 9.55 71.23 0.68 -1.28 16 23 H 0.06 1.10 7.80 -2.39 -0.02 1.08 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.09 1.69 7.25 -2.39 -0.02 1.67 16 28 H 0.29 12.10 8.31 -92.71 -0.77 11.33 16 29 H 0.15 6.55 5.85 -2.39 -0.01 6.54 16 30 H 0.11 4.58 7.53 -2.39 -0.02 4.56 16 31 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.51 6.86 -2.38 -0.02 1.49 16 34 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 Total: -1.00 -57.08 309.05 6.48 -50.60 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.07 Total: 18.37 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.47 Total: 3.50 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -0.97 Total: -84.38 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.07 Total: -33.18 kcal Atomic # 14 Polarization: 33.61 SS G_CDS: 2.03 Total: 35.63 kcal Atomic # 16 Polarization: 10.48 SS G_CDS: -1.04 Total: 9.44 kcal Total: -57.08 6.48 -50.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859922.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.627 kcal (2) G-P(sol) polarization free energy of solvation -57.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds