Wall clock time and date at job start Tue Mar 31 2020 00:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99879 * 2 1 4 4 H 1.48501 * 109.47055 * 270.00232 * 3 2 1 5 5 H 1.48506 * 109.46936 * 29.99874 * 3 2 1 6 6 H 1.48498 * 109.47100 * 149.99697 * 3 2 1 7 7 C 1.37875 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99770 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00057 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47000 * 180.02562 * 9 7 2 11 11 O 1.45203 * 109.46655 * 180.02562 * 10 9 7 12 12 C 1.34755 * 116.99512 * 180.02562 * 11 10 9 13 13 O 1.21505 * 120.00034 * 359.97438 * 12 11 10 14 14 C 1.47406 * 119.99874 * 179.97438 * 12 11 10 15 15 C 1.39829 * 120.14609 * 359.97438 * 14 12 11 16 16 C 1.37723 * 119.94719 * 179.97438 * 15 14 12 17 17 C 1.38511 * 120.33609 * 0.07732 * 16 15 14 18 18 C 1.38582 * 120.42126 * 0.27942 * 17 16 15 19 19 C 1.38996 * 119.91298 * 359.32155 * 18 17 16 20 20 O 1.35802 * 120.87369 * 180.56901 * 19 18 17 21 21 C 1.43172 * 116.74257 * 342.99566 * 20 19 18 22 22 C 1.53470 * 108.25202 * 46.15890 * 21 20 19 23 23 O 1.36149 * 119.36407 * 179.97438 * 18 17 16 24 24 H 0.97000 * 120.00126 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47059 * 60.00259 * 9 7 2 26 26 H 1.08995 * 109.46998 * 300.00314 * 9 7 2 27 27 H 1.09000 * 109.47071 * 60.00183 * 10 9 7 28 28 H 1.09006 * 109.47013 * 300.00136 * 10 9 7 29 29 H 1.07997 * 120.02592 * 359.97000 * 15 14 12 30 30 H 1.07996 * 119.83632 * 180.02562 * 16 15 14 31 31 H 1.08002 * 119.78500 * 179.97438 * 17 16 15 32 32 H 1.08994 * 109.70990 * 165.85235 * 21 20 19 33 33 H 1.09003 * 109.70658 * 286.47258 * 21 20 19 34 34 H 1.08997 * 109.70835 * 60.02229 * 22 21 20 35 35 H 1.09006 * 109.70866 * 180.60047 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 8 5.4737 -2.6364 0.0001 12 6 6.0854 -3.8371 -0.0003 13 8 5.4237 -4.8561 -0.0002 14 6 7.5575 -3.9142 -0.0009 15 6 8.3220 -2.7434 -0.0015 16 6 9.6971 -2.8202 -0.0014 17 6 10.3289 -4.0529 -0.0024 18 6 9.5855 -5.2224 -0.0093 19 6 8.1969 -5.1612 -0.0009 20 8 7.4494 -6.2950 0.0042 21 6 8.1133 -7.5061 -0.3731 22 6 9.4570 -7.5679 0.3657 23 8 10.2288 -6.4224 -0.0106 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6796 0.8895 26 1 3.8746 -0.6807 -0.8905 27 1 3.6580 -3.1505 -0.8897 28 1 3.6586 -3.1502 0.8904 29 1 7.8346 -1.7797 -0.0020 30 1 10.2858 -1.9149 -0.0015 31 1 11.4078 -4.1027 -0.0028 32 1 7.5007 -8.3633 -0.0942 33 1 8.2852 -7.5110 -1.4495 34 1 9.2855 -7.5577 1.4420 35 1 9.9884 -8.4779 0.0868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064168537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:59 Heat of formation + Delta-G solvation = -132.367089 kcal Electronic energy + Delta-G solvation = -20971.241943 eV Core-core repulsion = 17514.331977 eV Total energy + Delta-G solvation = -3456.909966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58318 -39.77766 -37.78735 -37.50110 -35.95267 -33.28950 -31.56513 -31.39164 -30.50826 -28.70582 -25.78769 -24.89851 -24.01589 -21.24898 -21.06021 -20.52541 -19.01329 -17.86827 -17.38327 -17.07790 -16.42106 -16.01785 -15.71618 -15.57084 -15.18924 -14.90994 -14.48034 -14.23056 -14.11536 -13.62051 -13.26430 -13.05082 -12.54443 -12.29511 -12.10590 -11.54456 -11.42078 -11.33408 -11.24634 -10.95409 -10.65884 -10.48024 -9.93272 -9.84505 -9.65565 -9.32675 -8.94362 -8.60591 -8.34835 -6.11154 -4.12187 0.55852 1.06176 2.63251 2.80185 2.92085 3.07509 3.29324 3.36527 3.40936 3.62076 3.90965 4.36764 4.40191 4.49356 4.58404 4.75204 4.84375 4.95683 5.07584 5.16498 5.22452 5.28021 5.45192 5.79504 5.85415 6.02065 6.02456 6.14004 6.32743 6.48835 6.60529 6.81339 7.10948 7.22311 7.25124 7.64642 8.21664 8.41860 8.90818 9.48410 11.01485 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.033374 B = 0.003671 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.776187 B = 7626.118239 C = 8419.659864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.084 3.916 11 O -0.358 6.358 12 C 0.501 3.499 13 O -0.492 6.492 14 C -0.119 4.119 15 C -0.056 4.056 16 C -0.132 4.132 17 C -0.083 4.083 18 C 0.031 3.969 19 C 0.111 3.889 20 O -0.272 6.272 21 C 0.015 3.985 22 C 0.019 3.981 23 O -0.306 6.306 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.151 0.849 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.026 -11.645 0.017 26.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.012 3.988 11 O -0.275 6.275 12 C 0.344 3.656 13 O -0.380 6.380 14 C -0.121 4.121 15 C -0.074 4.074 16 C -0.150 4.150 17 C -0.101 4.101 18 C -0.014 4.014 19 C 0.064 3.936 20 O -0.184 6.184 21 C -0.061 4.061 22 C -0.056 4.056 23 O -0.221 6.221 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.169 0.831 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.589 -11.893 0.022 26.418 hybrid contribution 0.154 0.488 -0.020 0.512 sum 23.743 -11.406 0.002 26.341 Atomic orbital electron populations 1.69899 1.06294 1.27186 1.50209 1.24941 0.94767 0.99191 0.94152 0.86743 0.80442 0.83251 0.78727 1.20057 1.21203 1.18713 1.20853 0.88307 0.95048 1.52263 0.90649 1.19628 0.96975 0.90165 0.97885 1.23384 0.72043 1.01546 1.01836 1.86517 1.26302 1.31316 1.83388 1.20680 0.88206 0.82510 0.74197 1.90852 1.66484 1.36056 1.44647 1.18629 0.90913 0.91215 1.11304 1.21424 0.93590 0.97806 0.94615 1.20909 0.94239 0.97198 1.02654 1.20654 1.00441 0.89412 0.99635 1.18688 0.89135 0.86940 1.06612 1.18889 0.88769 0.86957 0.99002 1.86611 1.35774 1.13452 1.82597 1.23749 0.94684 0.87430 1.00241 1.23672 0.93100 0.88542 1.00301 1.86310 1.37685 1.13224 1.84871 0.92453 0.95335 0.95775 0.91691 0.91664 0.83127 0.84125 0.84319 0.85698 0.90237 0.90304 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.53 -15.12 9.66 -34.44 -0.33 -15.46 16 8 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.35 16 10 C 0.08 1.86 5.41 37.16 0.20 2.06 16 11 O -0.36 -7.10 9.47 -40.64 -0.38 -7.48 16 12 C 0.50 9.48 7.89 34.46 0.27 9.75 16 13 O -0.49 -10.51 14.89 -26.68 -0.40 -10.91 16 14 C -0.12 -1.82 5.88 -104.86 -0.62 -2.44 16 15 C -0.06 -0.68 9.61 -39.18 -0.38 -1.06 16 16 C -0.13 -1.25 10.02 -39.67 -0.40 -1.65 16 17 C -0.08 -0.81 9.95 -39.35 -0.39 -1.20 16 18 C 0.03 0.37 6.49 -39.17 -0.25 0.11 16 19 C 0.11 1.59 6.51 -38.59 -0.25 1.34 16 20 O -0.27 -3.97 8.42 -47.36 -0.40 -4.37 16 21 C 0.01 0.13 7.26 37.40 0.27 0.40 16 22 C 0.02 0.15 7.26 37.40 0.27 0.42 16 23 O -0.31 -3.20 10.42 -33.04 -0.34 -3.55 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 26 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 27 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.15 1.73 7.61 -52.49 -0.40 1.33 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -34.44 304.85 -6.79 -41.23 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -4.13 Total: -3.43 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.83 Total: -6.08 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.77 Total: -26.79 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.52 Total: -26.31 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.44 -6.79 -41.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064168537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.141 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds