Wall clock time and date at job start Tue Mar 31 2020 00:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99879 * 2 1 4 4 H 1.48501 * 109.47055 * 270.00232 * 3 2 1 5 5 H 1.48506 * 109.46936 * 29.99874 * 3 2 1 6 6 H 1.48498 * 109.47100 * 149.99697 * 3 2 1 7 7 C 1.37875 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99770 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00057 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47000 * 180.02562 * 9 7 2 11 11 O 1.45203 * 109.46655 * 180.02562 * 10 9 7 12 12 C 1.34755 * 116.99512 * 180.02562 * 11 10 9 13 13 O 1.21505 * 120.00034 * 359.97438 * 12 11 10 14 14 C 1.47406 * 119.99874 * 179.97438 * 12 11 10 15 15 C 1.39829 * 120.14609 * 359.97438 * 14 12 11 16 16 C 1.37723 * 119.94719 * 179.97438 * 15 14 12 17 17 C 1.38511 * 120.33609 * 0.07732 * 16 15 14 18 18 C 1.38582 * 120.42126 * 0.27942 * 17 16 15 19 19 C 1.38996 * 119.91298 * 359.32155 * 18 17 16 20 20 O 1.35802 * 120.87369 * 180.56901 * 19 18 17 21 21 C 1.43172 * 116.74257 * 342.99566 * 20 19 18 22 22 C 1.53470 * 108.25202 * 46.15890 * 21 20 19 23 23 O 1.36149 * 119.36407 * 179.97438 * 18 17 16 24 24 H 0.97000 * 120.00126 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47059 * 60.00259 * 9 7 2 26 26 H 1.08995 * 109.46998 * 300.00314 * 9 7 2 27 27 H 1.09000 * 109.47071 * 60.00183 * 10 9 7 28 28 H 1.09006 * 109.47013 * 300.00136 * 10 9 7 29 29 H 1.07997 * 120.02592 * 359.97000 * 15 14 12 30 30 H 1.07996 * 119.83632 * 180.02562 * 16 15 14 31 31 H 1.08002 * 119.78500 * 179.97438 * 17 16 15 32 32 H 1.08994 * 109.70990 * 165.85235 * 21 20 19 33 33 H 1.09003 * 109.70658 * 286.47258 * 21 20 19 34 34 H 1.08997 * 109.70835 * 60.02229 * 22 21 20 35 35 H 1.09006 * 109.70866 * 180.60047 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 8 5.4737 -2.6364 0.0001 12 6 6.0854 -3.8371 -0.0003 13 8 5.4237 -4.8561 -0.0002 14 6 7.5575 -3.9142 -0.0009 15 6 8.3220 -2.7434 -0.0015 16 6 9.6971 -2.8202 -0.0014 17 6 10.3289 -4.0529 -0.0024 18 6 9.5855 -5.2224 -0.0093 19 6 8.1969 -5.1612 -0.0009 20 8 7.4494 -6.2950 0.0042 21 6 8.1133 -7.5061 -0.3731 22 6 9.4570 -7.5679 0.3657 23 8 10.2288 -6.4224 -0.0106 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6796 0.8895 26 1 3.8746 -0.6807 -0.8905 27 1 3.6580 -3.1505 -0.8897 28 1 3.6586 -3.1502 0.8904 29 1 7.8346 -1.7797 -0.0020 30 1 10.2858 -1.9149 -0.0015 31 1 11.4078 -4.1027 -0.0028 32 1 7.5007 -8.3633 -0.0942 33 1 8.2852 -7.5110 -1.4495 34 1 9.2855 -7.5577 1.4420 35 1 9.9884 -8.4779 0.0868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064168537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:58 Heat of formation + Delta-G solvation = -154.365039 kcal Electronic energy + Delta-G solvation = -20972.195845 eV Core-core repulsion = 17514.331977 eV Total energy + Delta-G solvation = -3457.863869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.46899 -41.21831 -38.69088 -38.41381 -37.51693 -35.39508 -32.99267 -32.22583 -32.02995 -29.51711 -27.51406 -25.84040 -25.26307 -22.76004 -22.12284 -21.98997 -19.99156 -19.18584 -18.64422 -18.35330 -17.87013 -17.56382 -16.98370 -16.44345 -16.29735 -16.06603 -15.67625 -15.33684 -15.14163 -14.99832 -14.88598 -14.40059 -14.02205 -13.37254 -13.23715 -13.11275 -12.90175 -12.49345 -12.44318 -12.24574 -12.07686 -11.86653 -11.80144 -11.55267 -11.45384 -11.28829 -10.81088 -9.86739 -9.21284 -8.34329 -6.43087 -0.45670 0.20444 1.39195 1.41305 1.46093 1.54096 1.58580 1.97152 2.19434 2.35398 2.63064 3.00453 3.16365 3.52872 3.70358 3.86225 3.89907 4.13233 4.14840 4.18228 4.19447 4.31622 4.45184 4.54480 4.60648 4.64010 4.90038 5.03877 5.06936 5.28221 5.30021 5.46604 5.51709 5.55913 5.81416 6.15372 6.26841 6.62713 6.70175 7.21976 8.81938 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.033374 B = 0.003671 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.776187 B = 7626.118239 C = 8419.659864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.241 1.241 7 C -0.545 4.545 8 H 0.033 0.967 9 C -0.001 4.001 10 C 0.095 3.905 11 O -0.353 6.353 12 C 0.498 3.502 13 O -0.528 6.528 14 C -0.153 4.153 15 C -0.058 4.058 16 C -0.116 4.116 17 C -0.068 4.068 18 C 0.025 3.975 19 C 0.093 3.907 20 O -0.310 6.310 21 C 0.004 3.996 22 C 0.020 3.980 23 O -0.310 6.310 24 H 0.271 0.729 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.155 0.845 30 H 0.182 0.818 31 H 0.173 0.827 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.109 -10.514 0.019 30.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.165 1.165 7 C -0.582 4.582 8 H 0.051 0.949 9 C -0.038 4.038 10 C 0.022 3.978 11 O -0.270 6.270 12 C 0.344 3.656 13 O -0.419 6.419 14 C -0.155 4.155 15 C -0.077 4.077 16 C -0.134 4.134 17 C -0.086 4.086 18 C -0.020 4.020 19 C 0.046 3.954 20 O -0.223 6.223 21 C -0.070 4.070 22 C -0.054 4.054 23 O -0.225 6.225 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.173 0.827 30 H 0.199 0.801 31 H 0.191 0.809 32 H 0.163 0.837 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 27.700 -10.787 0.022 29.726 hybrid contribution -1.071 -0.035 -0.024 1.071 sum 26.630 -10.822 -0.002 28.745 Atomic orbital electron populations 1.70049 1.08413 1.28690 1.51350 1.25991 0.95705 1.03721 0.93302 0.85566 0.79591 0.77361 0.79627 1.18664 1.20581 1.16461 1.21115 0.90741 0.93798 1.52584 0.94906 1.19457 0.94099 0.91571 0.98701 1.22968 0.73821 1.00112 1.00935 1.86495 1.24497 1.32240 1.83760 1.21456 0.89839 0.81463 0.72860 1.90821 1.67565 1.36867 1.46628 1.18615 0.88466 0.93228 1.15191 1.21601 0.94884 0.96790 0.94384 1.21335 0.93047 0.98737 1.00260 1.21164 1.02043 0.88591 0.96845 1.18920 0.88210 0.88362 1.06529 1.19109 0.89928 0.86598 0.99734 1.86542 1.37885 1.14973 1.82945 1.24094 0.95929 0.86216 1.00785 1.23928 0.92379 0.88918 1.00202 1.86301 1.37969 1.13366 1.84872 0.92014 0.94342 0.94452 0.92687 0.92719 0.82686 0.80067 0.80925 0.83747 0.89925 0.90161 0.82028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.19 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.96 43.57 27.47 68.60 1.88 45.45 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 7 C -0.54 -32.21 9.66 25.60 0.25 -31.96 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C 0.00 -0.04 4.42 29.85 0.13 0.09 16 10 C 0.10 4.33 5.41 71.98 0.39 4.72 16 11 O -0.35 -14.18 9.47 -56.66 -0.54 -14.71 16 12 C 0.50 19.49 7.89 70.24 0.55 20.04 16 13 O -0.53 -23.83 14.89 26.90 0.40 -23.43 16 14 C -0.15 -4.71 5.88 -20.02 -0.12 -4.82 16 15 C -0.06 -1.32 9.61 22.53 0.22 -1.10 16 16 C -0.12 -1.74 10.02 22.21 0.22 -1.52 16 17 C -0.07 -1.06 9.95 22.42 0.22 -0.84 16 18 C 0.02 0.54 6.49 22.53 0.15 0.68 16 19 C 0.09 2.66 6.51 22.91 0.15 2.81 16 20 O -0.31 -9.30 8.42 -64.33 -0.54 -9.85 16 21 C 0.00 0.08 7.26 72.14 0.52 0.60 16 22 C 0.02 0.26 7.26 72.14 0.52 0.79 16 23 O -0.31 -5.70 10.42 -82.99 -0.86 -6.57 16 24 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 25 H 0.04 1.80 7.20 -2.39 -0.02 1.78 16 26 H 0.04 1.72 7.57 -2.39 -0.02 1.71 16 27 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.05 2.57 8.14 -2.38 -0.02 2.55 16 29 H 0.16 3.27 7.61 -2.91 -0.02 3.24 16 30 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 31 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.16 0.77 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -78.35 304.85 5.37 -72.99 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.05 Total: 4.73 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 3.67 Total: -9.42 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.30 Total: -59.19 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -1.54 Total: -54.56 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.88 Total: 45.45 kcal Total: -78.35 5.37 -72.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064168537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.379 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds