Wall clock time and date at job start Tue Mar 31 2020 00:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32813 * 124.75914 * 2 1 4 4 C 1.39814 * 115.67825 * 180.26398 * 3 2 1 5 5 C 1.38309 * 112.97067 * 359.97438 * 4 3 2 6 6 C 1.40587 * 108.04557 * 179.97438 * 5 4 3 7 7 C 1.37620 * 107.56108 * 0.02562 * 6 5 4 8 8 C 1.46307 * 125.81401 * 180.02562 * 7 6 5 9 9 O 1.21785 * 119.99824 * 176.09410 * 8 7 6 10 10 N 1.34769 * 119.99994 * 356.08785 * 8 7 6 11 11 C 1.46504 * 119.99884 * 2.84492 * 10 8 7 12 12 C 1.36865 * 120.00304 * 182.84126 * 10 8 7 13 13 H 1.07995 * 119.99506 * 30.31484 * 12 10 8 14 14 C 1.38992 * 120.00248 * 210.31462 * 12 10 8 15 15 N 1.31407 * 119.99876 * 211.31992 * 14 12 10 16 16 Si 1.86804 * 119.99939 * 31.32214 * 14 12 10 17 17 H 1.48493 * 109.47133 * 94.81126 * 16 14 12 18 18 H 1.48496 * 109.46723 * 214.81003 * 16 14 12 19 19 H 1.48504 * 109.46875 * 334.80553 * 16 14 12 20 20 N 1.37918 * 108.37432 * 359.97438 * 7 6 5 21 21 C 1.46501 * 125.68752 * 180.02562 * 20 7 6 22 22 S 1.75591 * 124.76080 * 180.30333 * 2 1 3 23 23 H 1.09000 * 109.46473 * 179.72178 * 1 2 3 24 24 H 1.09001 * 109.47005 * 299.71639 * 1 2 3 25 25 H 1.08995 * 109.46891 * 59.72463 * 1 2 3 26 26 H 1.07997 * 122.16149 * 0.24595 * 3 2 1 27 27 H 1.08006 * 126.21771 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.47474 * 62.31892 * 11 10 8 29 29 H 1.09004 * 109.46860 * 182.31126 * 11 10 8 30 30 H 1.08995 * 109.47079 * 302.31034 * 11 10 8 31 31 H 0.96994 * 119.99801 * 179.97438 * 15 14 12 32 32 H 1.08994 * 109.47212 * 272.24037 * 21 20 7 33 33 H 1.09000 * 109.47405 * 32.24379 * 21 20 7 34 34 H 1.08998 * 109.46852 * 152.24472 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2643 1.0911 0.0000 4 6 3.6449 0.8705 -0.0058 5 6 3.9769 -0.4722 -0.0100 6 6 5.3791 -0.5740 -0.0162 7 6 5.8883 0.7045 -0.0152 8 6 7.3073 1.0608 -0.0209 9 8 7.6412 2.2299 -0.0911 10 7 8.2448 0.0954 0.0518 11 6 7.8449 -1.3138 0.0736 12 6 9.5705 0.4314 0.1052 13 1 9.8740 1.3600 0.5655 14 6 10.5261 -0.4224 -0.4330 15 7 11.7278 -0.4801 0.0954 16 14 10.1021 -1.4878 -1.9077 17 1 10.5237 -0.7989 -3.1537 18 1 10.8093 -2.7889 -1.7979 19 1 8.6362 -1.7227 -1.9435 20 7 4.8332 1.5927 -0.0090 21 6 4.9457 3.0534 -0.0066 22 16 2.5082 -1.4425 -0.0076 23 1 -0.3632 -1.0277 -0.0050 24 1 -0.3633 0.5094 0.8925 25 1 -0.3633 0.5181 -0.8875 26 1 1.8409 2.0847 0.0039 27 1 5.9524 -1.4894 -0.0210 28 1 7.3303 -1.5599 -0.8553 29 1 8.7304 -1.9412 0.1754 30 1 7.1766 -1.4889 0.9166 31 1 12.3946 -1.0762 -0.2799 32 1 5.0179 3.4105 1.0207 33 1 5.8379 3.3500 -0.5579 34 1 4.0649 3.4864 -0.4806 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064551938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:18 Heat of formation + Delta-G solvation = 73.565933 kcal Electronic energy + Delta-G solvation = -19238.269462 eV Core-core repulsion = 16265.335045 eV Total energy + Delta-G solvation = -2972.934418 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.03612 -38.39940 -35.77879 -35.04922 -32.72376 -31.95021 -30.36511 -27.29797 -26.70032 -25.83246 -24.50246 -22.22577 -21.20813 -19.21504 -18.77688 -17.41362 -16.83815 -15.76952 -15.52382 -15.25361 -15.08012 -14.52126 -14.11350 -13.77035 -13.73365 -13.51787 -12.90772 -12.71180 -12.45985 -12.39740 -12.33021 -12.23792 -12.03177 -11.62885 -11.09098 -10.75720 -10.61935 -10.55852 -10.29738 -9.84690 -9.27042 -9.12417 -8.69828 -7.97305 -7.65553 -7.29999 -6.61958 -4.00367 1.06815 1.71883 2.22400 2.40148 2.98116 2.99659 3.06363 3.17626 3.24522 4.05154 4.09406 4.42311 4.69464 4.91192 5.06305 5.19099 5.24032 5.39593 5.40995 5.45318 5.55717 5.70106 5.84444 5.85832 5.96436 6.06940 6.09574 6.19466 6.29022 6.35088 6.82038 7.17788 7.34221 7.50697 8.10818 8.34923 8.80864 9.15723 9.63197 10.48215 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.029211 B = 0.005170 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.325361 B = 5414.558625 C = 6117.436347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.177 4.177 3 C -0.105 4.105 4 C 0.036 3.964 5 C -0.204 4.204 6 C -0.164 4.164 7 C 0.057 3.943 8 C 0.502 3.498 9 O -0.578 6.578 10 N -0.431 5.431 11 C 0.054 3.946 12 C -0.320 4.320 13 H 0.112 0.888 14 C 0.067 3.933 15 N -0.838 5.838 16 Si 0.853 3.147 17 H -0.277 1.277 18 H -0.279 1.279 19 H -0.245 1.245 20 N -0.417 5.417 21 C 0.076 3.924 22 S 0.106 5.894 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.132 0.868 27 H 0.172 0.828 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.278 0.722 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.939 -2.228 -0.677 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.294 4.294 3 C -0.138 4.138 4 C -0.080 4.080 5 C -0.325 4.325 6 C -0.194 4.194 7 C -0.060 4.060 8 C 0.292 3.708 9 O -0.464 6.464 10 N -0.148 5.148 11 C -0.089 4.089 12 C -0.447 4.447 13 H 0.129 0.871 14 C -0.142 4.142 15 N -0.472 5.472 16 Si 0.677 3.323 17 H -0.203 1.203 18 H -0.205 1.205 19 H -0.169 1.169 20 N -0.096 5.096 21 C -0.065 4.065 22 S 0.366 5.634 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.150 0.850 27 H 0.189 0.811 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.791 -2.862 -0.688 19.021 hybrid contribution 0.385 0.999 -0.793 1.333 sum -18.407 -1.863 -1.482 18.560 Atomic orbital electron populations 1.20264 0.87752 1.02724 1.02646 1.23833 0.99450 0.95507 1.10607 1.18660 0.88955 0.99394 1.06817 1.18230 0.87762 0.89839 1.12149 1.22613 0.98257 0.95480 1.16115 1.21646 0.90361 0.97288 1.10079 1.20594 0.89433 0.87977 1.08011 1.16706 0.82464 0.86376 0.85223 1.90651 1.81593 1.17947 1.56183 1.43353 1.06076 1.03770 1.61640 1.22838 1.00981 0.84542 1.00543 1.19082 0.78054 1.09445 1.38145 0.87074 1.25321 0.94904 0.96749 0.97199 1.69884 1.05444 1.35434 1.36393 0.87449 0.80793 0.79645 0.84379 1.20286 1.20501 1.16916 1.43955 1.02621 1.06068 1.56955 1.22167 1.04544 0.76172 1.03643 1.83590 0.93495 1.06835 1.79522 0.91436 0.90829 0.90843 0.85027 0.81126 0.91676 0.90770 0.91635 0.91185 0.91190 0.87359 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.35 36.01 0.37 -0.24 16 2 C -0.18 -2.15 6.45 -36.17 -0.23 -2.38 16 3 C -0.11 -1.44 10.01 -40.86 -0.41 -1.85 16 4 C 0.04 0.61 7.20 -83.97 -0.60 0.00 16 5 C -0.20 -3.51 7.26 -38.67 -0.28 -3.80 16 6 C -0.16 -3.04 8.76 -38.92 -0.34 -3.38 16 7 C 0.06 1.18 6.81 -82.11 -0.56 0.62 16 8 C 0.50 12.19 7.58 -13.02 -0.10 12.09 16 9 O -0.58 -15.46 14.43 5.11 0.07 -15.39 16 10 N -0.43 -10.52 2.67 -123.83 -0.33 -10.85 16 11 C 0.05 1.07 6.32 59.85 0.38 1.45 16 12 C -0.32 -8.88 9.39 -15.03 -0.14 -9.02 16 13 H 0.11 3.45 7.79 -52.49 -0.41 3.04 16 14 C 0.07 1.79 4.92 -17.45 -0.09 1.71 16 15 N -0.84 -23.15 13.96 55.50 0.77 -22.38 16 16 Si 0.85 19.20 26.37 -169.99 -4.48 14.72 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.25 -5.08 4.59 56.52 0.26 -4.82 16 20 N -0.42 -7.75 3.26 -117.67 -0.38 -8.13 16 21 C 0.08 1.19 10.58 59.85 0.63 1.82 16 22 S 0.11 1.43 23.29 -107.50 -2.50 -1.07 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 27 H 0.17 2.85 3.93 -52.48 -0.21 2.64 16 28 H 0.07 1.20 5.20 -51.93 -0.27 0.93 16 29 H 0.07 1.47 5.41 -51.93 -0.28 1.19 16 30 H 0.07 1.14 6.21 -51.93 -0.32 0.82 16 31 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.11 1.92 6.32 -51.93 -0.33 1.59 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 290.33 15.07 4.38 4.38 Total: -1.00 -31.50 290.33 -7.48 -38.98 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.63 Total: 2.73 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.37 Total: -2.98 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.06 Total: -41.35 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.07 Total: -15.39 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.48 Total: 14.72 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.50 Total: -1.07 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.50 -7.48 -38.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064551938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.542 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds