Wall clock time and date at job start Tue Mar 31 2020 00:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32813 * 124.75914 * 2 1 4 4 C 1.39814 * 115.67825 * 180.26398 * 3 2 1 5 5 C 1.38309 * 112.97067 * 359.97438 * 4 3 2 6 6 C 1.40587 * 108.04557 * 179.97438 * 5 4 3 7 7 C 1.37620 * 107.56108 * 0.02562 * 6 5 4 8 8 C 1.46307 * 125.81401 * 180.02562 * 7 6 5 9 9 O 1.21785 * 119.99824 * 176.09410 * 8 7 6 10 10 N 1.34769 * 119.99994 * 356.08785 * 8 7 6 11 11 C 1.46504 * 119.99884 * 2.84492 * 10 8 7 12 12 C 1.36865 * 120.00304 * 182.84126 * 10 8 7 13 13 H 1.07995 * 119.99506 * 30.31484 * 12 10 8 14 14 C 1.38992 * 120.00248 * 210.31462 * 12 10 8 15 15 N 1.31407 * 119.99876 * 211.31992 * 14 12 10 16 16 Si 1.86804 * 119.99939 * 31.32214 * 14 12 10 17 17 H 1.48493 * 109.47133 * 94.81126 * 16 14 12 18 18 H 1.48496 * 109.46723 * 214.81003 * 16 14 12 19 19 H 1.48504 * 109.46875 * 334.80553 * 16 14 12 20 20 N 1.37918 * 108.37432 * 359.97438 * 7 6 5 21 21 C 1.46501 * 125.68752 * 180.02562 * 20 7 6 22 22 S 1.75591 * 124.76080 * 180.30333 * 2 1 3 23 23 H 1.09000 * 109.46473 * 179.72178 * 1 2 3 24 24 H 1.09001 * 109.47005 * 299.71639 * 1 2 3 25 25 H 1.08995 * 109.46891 * 59.72463 * 1 2 3 26 26 H 1.07997 * 122.16149 * 0.24595 * 3 2 1 27 27 H 1.08006 * 126.21771 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.47474 * 62.31892 * 11 10 8 29 29 H 1.09004 * 109.46860 * 182.31126 * 11 10 8 30 30 H 1.08995 * 109.47079 * 302.31034 * 11 10 8 31 31 H 0.96994 * 119.99801 * 179.97438 * 15 14 12 32 32 H 1.08994 * 109.47212 * 272.24037 * 21 20 7 33 33 H 1.09000 * 109.47405 * 32.24379 * 21 20 7 34 34 H 1.08998 * 109.46852 * 152.24472 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2643 1.0911 0.0000 4 6 3.6449 0.8705 -0.0058 5 6 3.9769 -0.4722 -0.0100 6 6 5.3791 -0.5740 -0.0162 7 6 5.8883 0.7045 -0.0152 8 6 7.3073 1.0608 -0.0209 9 8 7.6412 2.2299 -0.0911 10 7 8.2448 0.0954 0.0518 11 6 7.8449 -1.3138 0.0736 12 6 9.5705 0.4314 0.1052 13 1 9.8740 1.3600 0.5655 14 6 10.5261 -0.4224 -0.4330 15 7 11.7278 -0.4801 0.0954 16 14 10.1021 -1.4878 -1.9077 17 1 10.5237 -0.7989 -3.1537 18 1 10.8093 -2.7889 -1.7979 19 1 8.6362 -1.7227 -1.9435 20 7 4.8332 1.5927 -0.0090 21 6 4.9457 3.0534 -0.0066 22 16 2.5082 -1.4425 -0.0076 23 1 -0.3632 -1.0277 -0.0050 24 1 -0.3633 0.5094 0.8925 25 1 -0.3633 0.5181 -0.8875 26 1 1.8409 2.0847 0.0039 27 1 5.9524 -1.4894 -0.0210 28 1 7.3303 -1.5599 -0.8553 29 1 8.7304 -1.9412 0.1754 30 1 7.1766 -1.4889 0.9166 31 1 12.3946 -1.0762 -0.2799 32 1 5.0179 3.4105 1.0207 33 1 5.8379 3.3500 -0.5579 34 1 4.0649 3.4864 -0.4806 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064551938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:17 Heat of formation + Delta-G solvation = 53.432027 kcal Electronic energy + Delta-G solvation = -19239.142534 eV Core-core repulsion = 16265.335045 eV Total energy + Delta-G solvation = -2973.807490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41842 -40.15438 -37.09746 -36.73212 -34.51429 -33.47557 -31.48139 -28.85471 -28.20954 -27.19973 -26.13969 -23.38825 -22.70127 -20.66178 -20.08489 -19.31782 -18.26016 -17.58805 -17.11859 -16.73841 -16.22063 -16.04875 -15.71616 -15.09167 -14.98736 -14.60460 -14.58206 -14.34093 -14.05609 -13.80147 -13.51245 -13.43614 -13.15593 -12.88913 -12.70021 -12.63358 -11.96517 -11.70289 -11.62016 -11.58013 -11.08121 -10.62956 -10.44706 -9.91242 -8.91334 -8.65062 -8.49873 -6.11840 -0.14697 0.61136 0.95037 1.12006 1.26935 1.39410 1.44711 1.64011 1.80959 2.15081 2.31164 2.70302 2.98102 3.62487 3.75654 3.92601 4.12066 4.28801 4.32060 4.39310 4.52731 4.53969 4.57203 4.69315 4.73947 4.85358 4.86177 4.97237 5.15135 5.28395 5.41130 5.57749 5.80892 5.94888 6.19288 6.42896 6.81063 7.15974 7.72180 8.50610 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.029211 B = 0.005170 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.325361 B = 5414.558625 C = 6117.436347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.146 4.146 3 C -0.134 4.134 4 C 0.049 3.951 5 C -0.247 4.247 6 C -0.143 4.143 7 C 0.007 3.993 8 C 0.503 3.497 9 O -0.619 6.619 10 N -0.445 5.445 11 C 0.051 3.949 12 C -0.349 4.349 13 H 0.052 0.948 14 C 0.029 3.971 15 N -0.883 5.883 16 Si 0.922 3.078 17 H -0.289 1.289 18 H -0.260 1.260 19 H -0.215 1.215 20 N -0.427 5.427 21 C 0.076 3.924 22 S 0.139 5.861 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.159 0.841 27 H 0.186 0.814 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.286 0.714 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.492 -4.354 -1.658 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.264 4.264 3 C -0.166 4.166 4 C -0.069 4.069 5 C -0.366 4.366 6 C -0.173 4.173 7 C -0.108 4.108 8 C 0.294 3.706 9 O -0.507 6.507 10 N -0.163 5.163 11 C -0.090 4.090 12 C -0.476 4.476 13 H 0.070 0.930 14 C -0.177 4.177 15 N -0.518 5.518 16 Si 0.742 3.258 17 H -0.216 1.216 18 H -0.184 1.184 19 H -0.138 1.138 20 N -0.106 5.106 21 C -0.065 4.065 22 S 0.398 5.602 23 H 0.099 0.901 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.176 0.824 27 H 0.203 0.797 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -23.333 -5.013 -1.653 23.923 hybrid contribution 1.504 1.716 -0.403 2.317 sum -21.828 -3.297 -2.055 22.172 Atomic orbital electron populations 1.20494 0.84429 1.04292 1.04474 1.24515 1.01413 0.94372 1.06069 1.18931 0.87330 1.01391 1.08996 1.18850 0.88536 0.89743 1.09732 1.22945 0.98908 0.96909 1.17872 1.21817 0.91466 0.96722 1.07295 1.20033 0.87950 0.89645 1.13202 1.17281 0.84222 0.85758 0.83310 1.90608 1.82867 1.19753 1.57510 1.43369 1.04782 1.05688 1.62429 1.23046 1.01583 0.81788 1.02627 1.18633 0.80455 1.08369 1.40156 0.92966 1.26036 0.94357 0.98204 0.99079 1.69946 1.06822 1.37144 1.37862 0.86388 0.82529 0.78097 0.78745 1.21585 1.18420 1.13771 1.44111 1.02753 1.06684 1.57084 1.22217 1.04992 0.75450 1.03858 1.83522 0.91299 1.06590 1.78771 0.90057 0.88903 0.88887 0.82374 0.79692 0.89576 0.90816 0.89210 0.90424 0.90853 0.90267 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.35 71.24 0.74 -0.09 16 2 C -0.15 -2.84 6.45 24.51 0.16 -2.68 16 3 C -0.13 -3.12 10.01 21.47 0.21 -2.90 16 4 C 0.05 1.55 7.20 38.39 0.28 1.82 16 5 C -0.25 -7.87 7.26 22.86 0.17 -7.70 16 6 C -0.14 -5.08 8.76 22.70 0.20 -4.88 16 7 C 0.01 0.28 6.81 40.14 0.27 0.55 16 8 C 0.50 25.54 7.58 86.34 0.65 26.20 16 9 O -0.62 -35.57 14.43 -4.62 -0.07 -35.64 16 10 N -0.44 -22.48 2.67 -663.85 -1.77 -24.26 16 11 C 0.05 1.98 6.32 127.77 0.81 2.78 16 12 C -0.35 -20.61 9.39 84.09 0.79 -19.82 16 13 H 0.05 3.59 7.79 -2.91 -0.02 3.57 16 14 C 0.03 1.61 4.92 84.94 0.42 2.03 16 15 N -0.88 -50.90 13.96 21.67 0.30 -50.60 16 16 Si 0.92 39.79 26.37 68.60 1.81 41.60 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 19 H -0.22 -8.15 4.59 99.48 0.46 -7.70 16 20 N -0.43 -15.66 3.26 -526.19 -1.72 -17.37 16 21 C 0.08 2.38 10.58 127.77 1.35 3.73 16 22 S 0.14 3.19 23.29 -56.49 -1.32 1.88 16 23 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 27 H 0.19 5.73 3.93 -2.91 -0.01 5.72 16 28 H 0.09 2.95 5.20 -2.39 -0.01 2.93 16 29 H 0.07 2.84 5.41 -2.39 -0.01 2.83 16 30 H 0.09 3.00 6.21 -2.39 -0.01 2.99 16 31 H 0.29 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.97 6.32 -2.39 -0.02 2.95 16 34 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -74.48 290.33 4.18 -70.30 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.89 Total: 15.06 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 6.05 Total: -0.96 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -3.19 Total: -92.23 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.07 Total: -35.64 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.81 Total: 41.60 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.32 Total: 1.88 kcal Total: -74.48 4.18 -70.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064551938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.734 kcal (2) G-P(sol) polarization free energy of solvation -74.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds