Wall clock time and date at job start Tue Mar 31 2020 00:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86804 * 120.00276 * 2 1 4 4 H 1.48494 * 109.47165 * 273.60402 * 3 2 1 5 5 H 1.48499 * 109.46782 * 33.60166 * 3 2 1 6 6 H 1.48502 * 109.47331 * 153.59912 * 3 2 1 7 7 C 1.38949 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00066 * 341.35679 * 7 2 1 9 9 N 1.37097 * 120.00680 * 161.35658 * 7 2 1 10 10 C 1.34783 * 119.99280 * 320.25689 * 9 7 2 11 11 O 1.21286 * 120.00524 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99663 * 179.97438 * 10 9 7 13 13 S 1.81397 * 109.47019 * 180.02562 * 12 10 9 14 14 C 1.76197 * 103.00177 * 180.02562 * 13 12 10 15 15 C 1.39556 * 120.86708 * 359.72305 * 14 13 12 16 16 C 1.37869 * 119.05623 * 179.75676 * 15 14 13 17 17 N 1.32012 * 120.84786 * 0.52455 * 16 15 14 18 18 C 1.32014 * 121.92617 * 359.72585 * 17 16 15 19 19 C 1.37870 * 120.84983 * 0.02562 * 18 17 16 20 20 C 1.46497 * 120.00345 * 140.25758 * 9 7 2 21 21 C 1.52996 * 117.49821 * 2.39753 * 20 9 7 22 22 C 1.52997 * 117.49773 * 293.73337 * 20 9 7 23 23 H 0.97000 * 120.00141 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46688 * 60.00764 * 12 10 9 25 25 H 1.08998 * 109.47164 * 300.00560 * 12 10 9 26 26 H 1.07993 * 120.46980 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.57387 * 180.25042 * 16 15 14 28 28 H 1.08005 * 119.57818 * 179.97438 * 18 17 16 29 29 H 1.07996 * 120.46807 * 179.97438 * 19 18 17 30 30 H 1.09000 * 115.54766 * 148.06898 * 20 9 7 31 31 H 1.08993 * 117.49893 * 0.02562 * 21 20 9 32 32 H 1.09001 * 117.49410 * 145.02400 * 21 20 9 33 33 H 1.09001 * 117.50034 * 214.97840 * 22 20 9 34 34 H 1.08993 * 117.49855 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4194 2.0904 -1.3972 5 1 1.4857 2.6294 0.7748 6 1 3.5817 1.4194 0.6225 7 6 2.0088 -1.2033 0.0005 8 1 1.5113 -2.1140 0.3000 9 7 3.3258 -1.2347 -0.3790 10 6 3.7461 -0.4841 -1.4165 11 8 2.9594 0.2196 -2.0140 12 6 5.1940 -0.5181 -1.8334 13 16 5.4423 0.5910 -3.2472 14 6 7.1628 0.4205 -3.5873 15 6 7.9648 -0.4228 -2.8171 16 6 9.3055 -0.5318 -3.1193 17 7 9.8331 0.1562 -4.1148 18 6 9.1094 0.9680 -4.8631 19 6 7.7602 1.1297 -4.6300 20 6 4.2762 -2.0842 0.3431 21 6 3.7270 -2.9547 1.4751 22 6 4.5796 -1.7253 1.7991 23 1 -0.4850 0.8400 -0.0004 24 1 5.4667 -1.5348 -2.1165 25 1 5.8192 -0.1922 -1.0021 26 1 7.5405 -0.9846 -1.9982 27 1 9.9330 -1.1851 -2.5313 28 1 9.5804 1.5130 -5.6679 29 1 7.1741 1.7958 -5.2458 30 1 5.0912 -2.4916 -0.2552 31 1 2.6586 -2.8957 1.6823 32 1 4.1810 -3.9347 1.6218 33 1 5.5941 -1.8971 2.1589 34 1 4.0725 -0.8569 2.2196 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:12 Heat of formation + Delta-G solvation = 52.665885 kcal Electronic energy + Delta-G solvation = -18939.797161 eV Core-core repulsion = 15965.956449 eV Total energy + Delta-G solvation = -2973.840712 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.94742 -39.30112 -36.60824 -33.09689 -32.64585 -31.78522 -31.42438 -29.62033 -24.85759 -23.81930 -23.45021 -22.12733 -21.61088 -19.62055 -18.28216 -17.15228 -16.44803 -16.33487 -15.91833 -15.67462 -15.13026 -14.57693 -14.32371 -14.02345 -13.82158 -13.64047 -13.36993 -12.78007 -12.70370 -12.37495 -11.92544 -11.75960 -11.27555 -10.90000 -10.66937 -10.45943 -10.30968 -10.17215 -10.09010 -9.74823 -9.50296 -9.33358 -8.79862 -8.59982 -7.69565 -7.51555 -6.30620 -4.09208 0.99307 1.02905 1.39001 2.42762 3.09458 3.39763 3.59769 3.65837 3.66596 4.12948 4.32940 4.34581 4.51576 4.66105 4.87891 4.91912 5.05119 5.12021 5.24388 5.27871 5.33532 5.42374 5.45406 5.59416 5.62407 5.67971 5.90340 6.03290 6.12019 6.51682 6.51878 6.71899 7.69084 7.74998 7.85706 8.57460 8.68145 9.26966 9.56756 10.72761 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.005589 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.334261 B = 5008.494845 C = 5831.876216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.091 3.909 3 Si 0.914 3.086 4 H -0.244 1.244 5 H -0.310 1.310 6 H -0.284 1.284 7 C -0.351 4.351 8 H 0.101 0.899 9 N -0.422 5.422 10 C 0.455 3.545 11 O -0.524 6.524 12 C -0.139 4.139 13 S -0.009 6.009 14 C -0.057 4.057 15 C -0.194 4.194 16 C 0.117 3.883 17 N -0.501 5.501 18 C 0.114 3.886 19 C -0.159 4.159 20 C 0.056 3.944 21 C -0.168 4.168 22 C -0.197 4.197 23 H 0.275 0.725 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.134 0.866 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.952 -1.763 -2.914 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.119 4.119 3 Si 0.745 3.255 4 H -0.170 1.170 5 H -0.240 1.240 6 H -0.210 1.210 7 C -0.476 4.476 8 H 0.119 0.881 9 N -0.142 5.142 10 C 0.244 3.756 11 O -0.407 6.407 12 C -0.291 4.291 13 S 0.236 5.764 14 C -0.179 4.179 15 C -0.221 4.221 16 C -0.041 4.041 17 N -0.212 5.212 18 C -0.044 4.044 19 C -0.186 4.186 20 C -0.050 4.050 21 C -0.206 4.206 22 C -0.236 4.236 23 H 0.085 0.915 24 H 0.126 0.874 25 H 0.123 0.877 26 H 0.152 0.848 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.279 -0.778 -3.883 15.784 hybrid contribution 0.478 -0.040 1.077 1.179 sum 15.757 -0.818 -2.807 16.026 Atomic orbital electron populations 1.69721 1.06853 1.28509 1.44264 1.25320 0.95014 0.99649 0.91900 0.86332 0.78637 0.81873 0.78635 1.17027 1.24013 1.20959 1.18808 0.82889 0.96255 1.49688 0.88147 1.42998 1.07984 1.38503 1.24681 1.19199 0.87379 0.86385 0.82637 1.90590 1.54494 1.41137 1.54486 1.23944 1.02102 1.02985 1.00062 1.86457 0.97725 1.54849 1.37397 1.22906 1.00247 0.97383 0.97365 1.22166 0.95947 1.01901 1.02112 1.22612 0.92391 0.95649 0.93434 1.67735 1.39759 1.07610 1.06103 1.22657 0.90354 0.94327 0.97046 1.21735 0.96489 1.01820 0.98559 1.21864 0.95758 0.99248 0.88098 1.23145 1.01782 0.93930 1.01729 1.23303 1.00126 1.00473 0.99669 0.91548 0.87438 0.87688 0.84773 0.82698 0.82494 0.84328 0.87196 0.86925 0.89237 0.89335 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.63 13.96 55.50 0.77 -24.85 16 2 C 0.09 2.62 4.89 -17.47 -0.09 2.53 16 3 Si 0.91 24.03 24.58 -169.99 -4.18 19.85 16 4 H -0.24 -6.75 6.09 56.52 0.34 -6.41 16 5 H -0.31 -8.07 7.11 56.52 0.40 -7.66 16 6 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.35 -9.43 8.77 -14.93 -0.13 -9.56 16 8 H 0.10 2.80 6.95 -52.48 -0.36 2.44 16 9 N -0.42 -9.59 2.56 -107.73 -0.28 -9.86 16 10 C 0.46 10.34 5.90 -10.98 -0.06 10.27 16 11 O -0.52 -14.02 10.74 5.55 0.06 -13.96 16 12 C -0.14 -2.34 3.49 36.01 0.13 -2.22 16 13 S -0.01 -0.15 21.10 -107.50 -2.27 -2.42 16 14 C -0.06 -0.79 6.17 -38.60 -0.24 -1.03 16 15 C -0.19 -2.35 9.44 -39.23 -0.37 -2.72 16 16 C 0.12 1.33 11.17 -17.61 -0.20 1.13 16 17 N -0.50 -6.25 10.36 -13.36 -0.14 -6.38 16 18 C 0.11 1.27 11.17 -17.61 -0.20 1.07 16 19 C -0.16 -1.93 9.90 -39.23 -0.39 -2.31 16 20 C 0.06 0.97 5.85 -67.94 -0.40 0.57 16 21 C -0.17 -2.67 9.80 -26.69 -0.26 -2.93 16 22 C -0.20 -3.10 10.37 -26.69 -0.28 -3.38 16 23 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 24 H 0.11 1.50 7.23 -51.92 -0.38 1.12 16 25 H 0.10 1.57 7.75 -51.92 -0.40 1.17 16 26 H 0.13 1.41 6.08 -52.49 -0.32 1.09 16 27 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 29 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.11 1.51 6.99 -51.93 -0.36 1.15 16 31 H 0.11 2.08 6.48 -51.93 -0.34 1.74 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -33.04 298.90 -7.89 -40.93 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.89 Total: 0.77 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.48 Total: -8.57 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.36 Total: -41.10 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.06 Total: -13.96 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -4.18 Total: 19.85 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.27 Total: -2.42 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.04 -7.89 -40.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.595 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds