Wall clock time and date at job start Tue Mar 31 2020 00:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86804 * 120.00276 * 2 1 4 4 H 1.48494 * 109.47165 * 273.60402 * 3 2 1 5 5 H 1.48499 * 109.46782 * 33.60166 * 3 2 1 6 6 H 1.48502 * 109.47331 * 153.59912 * 3 2 1 7 7 C 1.38949 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00066 * 341.35679 * 7 2 1 9 9 N 1.37097 * 120.00680 * 161.35658 * 7 2 1 10 10 C 1.34783 * 119.99280 * 320.25689 * 9 7 2 11 11 O 1.21286 * 120.00524 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99663 * 179.97438 * 10 9 7 13 13 S 1.81397 * 109.47019 * 180.02562 * 12 10 9 14 14 C 1.76197 * 103.00177 * 180.02562 * 13 12 10 15 15 C 1.39556 * 120.86708 * 359.72305 * 14 13 12 16 16 C 1.37869 * 119.05623 * 179.75676 * 15 14 13 17 17 N 1.32012 * 120.84786 * 0.52455 * 16 15 14 18 18 C 1.32014 * 121.92617 * 359.72585 * 17 16 15 19 19 C 1.37870 * 120.84983 * 0.02562 * 18 17 16 20 20 C 1.46497 * 120.00345 * 140.25758 * 9 7 2 21 21 C 1.52996 * 117.49821 * 2.39753 * 20 9 7 22 22 C 1.52997 * 117.49773 * 293.73337 * 20 9 7 23 23 H 0.97000 * 120.00141 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46688 * 60.00764 * 12 10 9 25 25 H 1.08998 * 109.47164 * 300.00560 * 12 10 9 26 26 H 1.07993 * 120.46980 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.57387 * 180.25042 * 16 15 14 28 28 H 1.08005 * 119.57818 * 179.97438 * 18 17 16 29 29 H 1.07996 * 120.46807 * 179.97438 * 19 18 17 30 30 H 1.09000 * 115.54766 * 148.06898 * 20 9 7 31 31 H 1.08993 * 117.49893 * 0.02562 * 21 20 9 32 32 H 1.09001 * 117.49410 * 145.02400 * 21 20 9 33 33 H 1.09001 * 117.50034 * 214.97840 * 22 20 9 34 34 H 1.08993 * 117.49855 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4194 2.0904 -1.3972 5 1 1.4857 2.6294 0.7748 6 1 3.5817 1.4194 0.6225 7 6 2.0088 -1.2033 0.0005 8 1 1.5113 -2.1140 0.3000 9 7 3.3258 -1.2347 -0.3790 10 6 3.7461 -0.4841 -1.4165 11 8 2.9594 0.2196 -2.0140 12 6 5.1940 -0.5181 -1.8334 13 16 5.4423 0.5910 -3.2472 14 6 7.1628 0.4205 -3.5873 15 6 7.9648 -0.4228 -2.8171 16 6 9.3055 -0.5318 -3.1193 17 7 9.8331 0.1562 -4.1148 18 6 9.1094 0.9680 -4.8631 19 6 7.7602 1.1297 -4.6300 20 6 4.2762 -2.0842 0.3431 21 6 3.7270 -2.9547 1.4751 22 6 4.5796 -1.7253 1.7991 23 1 -0.4850 0.8400 -0.0004 24 1 5.4667 -1.5348 -2.1165 25 1 5.8192 -0.1922 -1.0021 26 1 7.5405 -0.9846 -1.9982 27 1 9.9330 -1.1851 -2.5313 28 1 9.5804 1.5130 -5.6679 29 1 7.1741 1.7958 -5.2458 30 1 5.0912 -2.4916 -0.2552 31 1 2.6586 -2.8957 1.6823 32 1 4.1810 -3.9347 1.6218 33 1 5.5941 -1.8971 2.1589 34 1 4.0725 -0.8569 2.2196 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065895369.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:00 Heat of formation + Delta-G solvation = 30.847584 kcal Electronic energy + Delta-G solvation = -18940.743274 eV Core-core repulsion = 15965.956449 eV Total energy + Delta-G solvation = -2974.786824 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.02843 -40.83189 -38.14740 -35.01007 -33.72791 -33.43429 -32.38931 -31.10047 -26.72865 -24.76770 -24.38238 -23.49612 -22.99922 -21.35475 -19.55565 -18.71984 -17.93925 -17.55790 -17.23826 -16.87408 -16.45730 -16.10388 -15.72350 -15.28338 -15.10158 -14.92137 -14.69562 -14.52779 -14.09049 -13.90282 -13.56672 -12.97328 -12.77645 -12.48465 -12.21955 -12.06016 -11.66887 -11.65412 -11.46467 -11.24639 -10.77209 -10.60622 -10.40258 -10.17934 -9.50422 -8.73691 -8.47299 -6.21990 0.06723 0.16415 0.17708 1.13808 1.26022 1.27631 1.49704 1.77308 2.37725 2.50574 2.79914 2.91686 3.18202 3.57279 3.58715 3.84516 3.92844 3.98527 4.03348 4.10669 4.16318 4.21928 4.29683 4.52547 4.79614 4.84767 4.88408 4.93600 5.03096 5.21409 5.44532 5.62822 5.68028 5.77218 6.62584 6.77344 6.99642 7.24224 7.70571 8.59757 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.005589 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.334261 B = 5008.494845 C = 5831.876216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.044 3.956 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.313 1.313 6 H -0.266 1.266 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.438 5.438 10 C 0.450 3.550 11 O -0.572 6.572 12 C -0.120 4.120 13 S -0.074 6.074 14 C -0.064 4.064 15 C -0.194 4.194 16 C 0.116 3.884 17 N -0.516 5.516 18 C 0.114 3.886 19 C -0.166 4.166 20 C 0.037 3.963 21 C -0.167 4.167 22 C -0.183 4.183 23 H 0.273 0.727 24 H 0.143 0.857 25 H 0.132 0.868 26 H 0.154 0.846 27 H 0.187 0.813 28 H 0.187 0.813 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.285 -2.997 -2.656 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.161 4.161 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.243 1.243 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.159 5.159 10 C 0.240 3.760 11 O -0.458 6.458 12 C -0.271 4.271 13 S 0.170 5.830 14 C -0.185 4.185 15 C -0.220 4.220 16 C -0.042 4.042 17 N -0.227 5.227 18 C -0.043 4.043 19 C -0.192 4.192 20 C -0.067 4.067 21 C -0.204 4.204 22 C -0.221 4.221 23 H 0.082 0.918 24 H 0.161 0.839 25 H 0.150 0.850 26 H 0.172 0.828 27 H 0.204 0.796 28 H 0.204 0.796 29 H 0.164 0.836 30 H 0.175 0.825 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.662 -2.039 -3.595 20.092 hybrid contribution -0.721 0.239 0.912 1.187 sum 18.941 -1.800 -2.683 19.215 Atomic orbital electron populations 1.69806 1.08007 1.28734 1.47884 1.25915 0.95432 1.02059 0.92647 0.85540 0.78527 0.79604 0.77008 1.19685 1.24342 1.19124 1.18704 0.85246 0.94870 1.47767 0.90416 1.43185 1.07529 1.39470 1.25673 1.20164 0.89736 0.84487 0.81596 1.90559 1.56606 1.42883 1.55725 1.23738 0.97614 1.05024 1.00683 1.86718 1.01655 1.56222 1.38450 1.22774 0.97865 0.99099 0.98795 1.22436 0.96115 1.01329 1.02168 1.23140 0.92444 0.95439 0.93132 1.67813 1.40305 1.07982 1.06633 1.23116 0.89840 0.93947 0.97376 1.21963 0.97111 1.01774 0.98352 1.22356 0.96038 0.99260 0.89079 1.23180 1.00170 0.96160 1.00918 1.23355 1.02052 0.98955 0.97769 0.91789 0.83874 0.84992 0.82811 0.79580 0.79632 0.83558 0.82470 0.90668 0.85074 0.84634 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.73 13.96 21.66 0.30 -56.43 16 2 C 0.04 2.61 4.89 84.93 0.41 3.03 16 3 Si 0.96 51.22 24.58 68.60 1.69 52.91 16 4 H -0.27 -15.35 6.09 99.48 0.61 -14.74 16 5 H -0.31 -16.44 7.11 99.48 0.71 -15.74 16 6 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.34 -18.64 8.77 84.04 0.74 -17.90 16 8 H 0.08 4.54 6.95 -2.91 -0.02 4.52 16 9 N -0.44 -19.46 2.56 -613.14 -1.57 -21.03 16 10 C 0.45 19.92 5.90 87.66 0.52 20.43 16 11 O -0.57 -31.07 10.74 -3.05 -0.03 -31.10 16 12 C -0.12 -3.64 3.49 71.24 0.25 -3.40 16 13 S -0.07 -2.41 21.10 -56.49 -1.19 -3.60 16 14 C -0.06 -1.59 6.17 22.90 0.14 -1.45 16 15 C -0.19 -3.89 9.44 22.50 0.21 -3.68 16 16 C 0.12 2.13 11.17 84.58 0.94 3.07 16 17 N -0.52 -10.99 10.36 -196.17 -2.03 -13.02 16 18 C 0.11 2.20 11.17 84.58 0.94 3.14 16 19 C -0.17 -3.63 9.90 22.50 0.22 -3.41 16 20 C 0.04 1.13 5.85 44.99 0.26 1.39 16 21 C -0.17 -4.84 9.80 30.62 0.30 -4.54 16 22 C -0.18 -5.07 10.37 30.62 0.32 -4.76 16 23 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 24 H 0.14 3.30 7.23 -2.39 -0.02 3.28 16 25 H 0.13 3.32 7.75 -2.39 -0.02 3.31 16 26 H 0.15 2.38 6.08 -2.91 -0.02 2.36 16 27 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 28 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.16 3.35 6.99 -2.39 -0.02 3.33 16 31 H 0.07 2.78 6.48 -2.39 -0.02 2.76 16 32 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -76.94 298.90 3.44 -73.50 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.01 Total: 6.83 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 5.26 Total: -8.06 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -3.30 Total: -90.48 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.03 Total: -31.10 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 1.69 Total: 52.91 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -1.19 Total: -3.60 kcal Total: -76.94 3.44 -73.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895369.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.344 kcal (2) G-P(sol) polarization free energy of solvation -76.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds