Wall clock time and date at job start Tue Mar 31 2020 00:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48500 * 109.47317 * 269.99795 * 3 2 1 5 5 H 1.48507 * 109.47110 * 29.99710 * 3 2 1 6 6 H 1.48504 * 109.47456 * 149.99618 * 3 2 1 7 7 C 1.38952 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99756 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99696 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00003 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99872 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47141 * 180.02562 * 12 10 9 14 14 C 1.45610 * 110.99863 * 291.91271 * 13 12 10 15 15 C 1.53738 * 109.10374 * 190.87837 * 14 13 12 16 16 S 1.81936 * 106.76958 * 289.32747 * 15 14 13 17 17 C 1.76632 * 101.85980 * 43.49035 * 16 15 14 18 18 C 1.39084 * 118.30503 * 168.43903 * 17 16 15 19 19 C 1.38040 * 120.47268 * 179.27981 * 18 17 16 20 20 C 1.38277 * 119.63675 * 359.90507 * 19 18 17 21 21 C 1.37813 * 120.21148 * 0.29212 * 20 19 18 22 22 C 1.38930 * 121.44010 * 348.16068 * 17 16 15 23 23 H 0.97002 * 120.00187 * 0.02562 * 1 2 3 24 24 H 0.96998 * 120.00496 * 0.02562 * 9 7 2 25 25 H 1.08998 * 109.47143 * 59.99610 * 12 10 9 26 26 H 1.09007 * 109.46935 * 299.99911 * 12 10 9 27 27 H 1.09003 * 109.53362 * 310.77104 * 14 13 12 28 28 H 1.09005 * 109.53449 * 70.99259 * 14 13 12 29 29 H 1.09000 * 109.99223 * 48.64264 * 15 14 13 30 30 H 1.09004 * 109.99559 * 169.92065 * 15 14 13 31 31 H 1.07997 * 119.76081 * 359.18225 * 18 17 16 32 32 H 1.08007 * 120.18423 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.89489 * 180.30562 * 20 19 18 34 34 H 1.08000 * 119.57670 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9794 0.0007 14 6 2.9240 -6.0463 -1.2599 15 6 3.7016 -7.3711 -1.3232 16 16 5.0585 -7.2413 -0.1182 17 6 4.2431 -6.5142 1.2698 18 6 4.9149 -6.4826 2.4872 19 6 4.3257 -5.9117 3.5973 20 6 3.0591 -5.3664 3.4948 21 6 2.3858 -5.3977 2.2928 22 6 2.9658 -5.9785 1.1610 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3907 -0.0002 25 1 0.6174 -4.9204 -0.8902 26 1 0.6168 -4.9208 0.8898 27 1 2.2186 -5.9978 -2.0895 28 1 3.6214 -5.2110 -1.3238 29 1 3.0463 -8.2009 -1.0585 30 1 4.1042 -7.5195 -2.3252 31 1 5.9041 -6.9092 2.5649 32 1 4.8515 -5.8901 4.5405 33 1 2.5962 -4.9143 4.3595 34 1 1.3972 -4.9684 2.2242 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066472313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:18 Heat of formation + Delta-G solvation = 11.135107 kcal Electronic energy + Delta-G solvation = -19594.026704 eV Core-core repulsion = 16618.385082 eV Total energy + Delta-G solvation = -2975.641622 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23307 -37.93774 -36.26940 -33.95865 -31.90273 -31.27347 -30.46221 -29.44139 -26.59188 -24.39190 -23.46095 -22.21253 -20.75303 -19.32403 -18.06780 -17.59080 -16.41478 -16.25193 -15.71924 -15.22888 -14.57599 -14.56121 -14.15847 -13.80185 -13.39091 -13.34321 -13.04568 -12.77850 -12.50849 -12.29868 -11.93528 -11.60250 -11.44091 -11.13032 -11.05486 -10.71192 -10.45750 -10.31714 -9.98670 -9.78000 -9.54109 -9.33957 -8.63174 -8.06916 -7.66110 -6.84581 -6.50836 -3.92257 1.61394 1.74038 1.85431 2.60007 3.10988 3.21388 3.27413 3.68910 3.75133 4.09680 4.25671 4.71595 4.91316 4.97550 5.17284 5.19617 5.27904 5.32558 5.54416 5.62604 5.63724 5.70664 5.85600 5.94264 6.07520 6.15012 6.25029 6.34620 6.60169 6.86290 6.96680 7.15857 7.46561 7.54534 7.93660 8.47958 9.07063 9.40670 9.90705 10.65540 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.005478 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.328005 B = 5110.128824 C = 5498.447208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.553 5.553 10 C 0.407 3.593 11 O -0.581 6.581 12 C 0.041 3.959 13 N -0.489 5.489 14 C 0.050 3.950 15 C -0.098 4.098 16 S -0.142 6.142 17 C -0.114 4.114 18 C -0.075 4.075 19 C -0.147 4.147 20 C -0.090 4.090 21 C -0.150 4.150 22 C 0.169 3.831 23 H 0.273 0.727 24 H 0.393 0.607 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -12.476 1.330 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.756 3.244 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.189 5.189 10 C 0.191 3.809 11 O -0.466 6.466 12 C -0.088 4.088 13 N -0.201 5.201 14 C -0.078 4.078 15 C -0.247 4.247 16 S 0.098 5.902 17 C -0.229 4.229 18 C -0.098 4.098 19 C -0.168 4.168 20 C -0.110 4.110 21 C -0.172 4.172 22 C 0.065 3.935 23 H 0.083 0.917 24 H 0.226 0.774 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.681 -13.085 0.986 13.629 hybrid contribution -1.231 1.943 0.105 2.303 sum 2.450 -11.142 1.091 11.461 Atomic orbital electron populations 1.69601 1.05956 1.28368 1.49960 1.25273 0.95625 0.99797 0.96996 0.85866 0.79325 0.80722 0.78474 1.20328 1.20795 1.19361 1.19706 0.93384 0.82174 1.47742 0.87926 1.41894 1.09192 1.04656 1.63133 1.20579 0.88928 0.85643 0.85746 1.90564 1.13411 1.86566 1.56033 1.22280 0.94596 0.87404 1.04546 1.56942 1.20506 1.40994 1.01653 1.22265 0.98580 0.96949 0.89972 1.23849 0.98574 1.01207 1.01031 1.85237 1.17755 1.77568 1.09647 1.20833 0.95656 1.08981 0.97454 1.20557 0.98943 0.99503 0.90818 1.20799 0.96113 1.01826 0.98025 1.20853 0.94901 0.98176 0.97116 1.21238 1.01237 1.02158 0.92541 1.18160 0.90265 0.94551 0.90515 0.91719 0.77402 0.88411 0.88021 0.89120 0.89243 0.88650 0.86859 0.86125 0.86132 0.86195 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.78 13.05 55.50 0.72 -23.05 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 9 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 10 C 0.41 9.08 6.54 -10.98 -0.07 9.01 16 11 O -0.58 -15.00 12.74 5.55 0.07 -14.93 16 12 C 0.04 0.70 5.27 -4.98 -0.03 0.67 16 13 N -0.49 -8.27 4.36 -172.92 -0.75 -9.02 16 14 C 0.05 0.78 4.96 -4.14 -0.02 0.76 16 15 C -0.10 -1.30 6.76 37.54 0.25 -1.05 16 16 S -0.14 -2.25 22.13 -107.50 -2.38 -4.63 16 17 C -0.11 -2.04 6.05 -39.01 -0.24 -2.28 16 18 C -0.07 -1.22 9.68 -39.34 -0.38 -1.60 16 19 C -0.15 -2.24 10.06 -39.64 -0.40 -2.63 16 20 C -0.09 -1.45 10.02 -39.72 -0.40 -1.84 16 21 C -0.15 -2.66 8.21 -39.15 -0.32 -2.98 16 22 C 0.17 3.11 4.42 -83.71 -0.37 2.74 16 23 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16 25 H 0.10 1.43 7.95 -51.93 -0.41 1.01 16 26 H 0.10 1.56 5.82 -51.93 -0.30 1.26 16 27 H 0.09 1.22 7.92 -51.93 -0.41 0.81 16 28 H 0.09 1.75 6.19 -51.93 -0.32 1.43 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.13 2.12 5.38 -52.49 -0.28 1.84 16 LS Contribution 292.68 15.07 4.41 4.41 Total: -1.00 -30.86 292.68 -8.90 -39.75 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -3.68 Total: 12.12 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.21 Total: -6.94 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.09 Total: -45.55 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.07 Total: -14.93 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -2.38 Total: -4.63 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.86 -8.90 -39.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066472313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.888 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds