Wall clock time and date at job start Tue Mar 31 2020 00:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48500 * 109.47317 * 269.99795 * 3 2 1 5 5 H 1.48507 * 109.47110 * 29.99710 * 3 2 1 6 6 H 1.48504 * 109.47456 * 149.99618 * 3 2 1 7 7 C 1.38952 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99756 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99696 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00003 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99872 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47141 * 180.02562 * 12 10 9 14 14 C 1.45610 * 110.99863 * 291.91271 * 13 12 10 15 15 C 1.53738 * 109.10374 * 190.87837 * 14 13 12 16 16 S 1.81936 * 106.76958 * 289.32747 * 15 14 13 17 17 C 1.76632 * 101.85980 * 43.49035 * 16 15 14 18 18 C 1.39084 * 118.30503 * 168.43903 * 17 16 15 19 19 C 1.38040 * 120.47268 * 179.27981 * 18 17 16 20 20 C 1.38277 * 119.63675 * 359.90507 * 19 18 17 21 21 C 1.37813 * 120.21148 * 0.29212 * 20 19 18 22 22 C 1.38930 * 121.44010 * 348.16068 * 17 16 15 23 23 H 0.97002 * 120.00187 * 0.02562 * 1 2 3 24 24 H 0.96998 * 120.00496 * 0.02562 * 9 7 2 25 25 H 1.08998 * 109.47143 * 59.99610 * 12 10 9 26 26 H 1.09007 * 109.46935 * 299.99911 * 12 10 9 27 27 H 1.09003 * 109.53362 * 310.77104 * 14 13 12 28 28 H 1.09005 * 109.53449 * 70.99259 * 14 13 12 29 29 H 1.09000 * 109.99223 * 48.64264 * 15 14 13 30 30 H 1.09004 * 109.99559 * 169.92065 * 15 14 13 31 31 H 1.07997 * 119.76081 * 359.18225 * 18 17 16 32 32 H 1.08007 * 120.18423 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.89489 * 180.30562 * 20 19 18 34 34 H 1.08000 * 119.57670 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9794 0.0007 14 6 2.9240 -6.0463 -1.2599 15 6 3.7016 -7.3711 -1.3232 16 16 5.0585 -7.2413 -0.1182 17 6 4.2431 -6.5142 1.2698 18 6 4.9149 -6.4826 2.4872 19 6 4.3257 -5.9117 3.5973 20 6 3.0591 -5.3664 3.4948 21 6 2.3858 -5.3977 2.2928 22 6 2.9658 -5.9785 1.1610 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3907 -0.0002 25 1 0.6174 -4.9204 -0.8902 26 1 0.6168 -4.9208 0.8898 27 1 2.2186 -5.9978 -2.0895 28 1 3.6214 -5.2110 -1.3238 29 1 3.0463 -8.2009 -1.0585 30 1 4.1042 -7.5195 -2.3252 31 1 5.9041 -6.9092 2.5649 32 1 4.8515 -5.8901 4.5405 33 1 2.5962 -4.9143 4.3595 34 1 1.3972 -4.9684 2.2242 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066472313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:18 Heat of formation + Delta-G solvation = -9.010760 kcal Electronic energy + Delta-G solvation = -19594.900294 eV Core-core repulsion = 16618.385082 eV Total energy + Delta-G solvation = -2976.515212 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.64600 -39.54241 -37.65340 -35.88784 -33.45835 -32.92189 -31.69421 -30.77107 -28.13967 -26.14922 -24.67070 -23.51793 -22.12642 -20.99440 -19.95142 -18.90952 -18.04082 -17.50889 -17.10824 -16.72978 -16.28189 -15.94228 -15.75397 -15.29715 -14.86175 -14.85521 -14.34023 -14.09410 -13.76892 -13.58901 -13.48600 -13.25132 -13.02449 -12.67025 -12.46158 -12.31529 -12.16301 -11.92174 -11.57106 -11.31930 -11.00019 -10.61393 -10.30715 -10.02261 -8.99634 -8.50209 -8.11593 -5.98045 0.33715 0.45965 0.67087 1.33627 1.39045 1.40792 1.50694 1.98016 2.26119 2.44454 2.94943 3.16132 3.17066 3.65867 3.72248 4.09440 4.11531 4.14621 4.31281 4.37317 4.40215 4.45879 4.53914 4.59402 4.69691 4.89131 4.96182 5.06841 5.37235 5.38154 5.60321 5.67692 5.88444 5.96521 6.24960 6.54948 7.09111 7.50563 8.05789 8.66618 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.005478 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.328005 B = 5110.128824 C = 5498.447208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.277 1.277 7 C -0.330 4.330 8 H 0.074 0.926 9 N -0.564 5.564 10 C 0.413 3.587 11 O -0.616 6.616 12 C 0.049 3.951 13 N -0.481 5.481 14 C 0.047 3.953 15 C -0.085 4.085 16 S -0.159 6.159 17 C -0.138 4.138 18 C -0.088 4.088 19 C -0.145 4.145 20 C -0.100 4.100 21 C -0.172 4.172 22 C 0.144 3.856 23 H 0.278 0.722 24 H 0.397 0.603 25 H 0.129 0.871 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -13.110 1.366 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.202 1.202 7 C -0.460 4.460 8 H 0.092 0.908 9 N -0.201 5.201 10 C 0.199 3.801 11 O -0.503 6.503 12 C -0.080 4.080 13 N -0.193 5.193 14 C -0.081 4.081 15 C -0.233 4.233 16 S 0.081 5.919 17 C -0.253 4.253 18 C -0.111 4.111 19 C -0.165 4.165 20 C -0.121 4.121 21 C -0.194 4.194 22 C 0.040 3.960 23 H 0.088 0.912 24 H 0.231 0.769 25 H 0.147 0.853 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.066 0.934 29 H 0.129 0.871 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.275 -13.738 1.024 14.160 hybrid contribution -1.050 2.066 0.117 2.320 sum 2.226 -11.672 1.141 11.937 Atomic orbital electron populations 1.69649 1.06651 1.29322 1.50015 1.25941 0.96469 1.02143 0.96253 0.85021 0.77889 0.77367 0.78646 1.19643 1.19398 1.20193 1.19565 0.92453 0.84068 1.49890 0.90785 1.41925 1.09298 1.04608 1.64298 1.21544 0.88710 0.86796 0.83009 1.90551 1.15471 1.87478 1.56761 1.22335 0.94420 0.84269 1.06957 1.57109 1.20442 1.40076 1.01692 1.22292 0.98563 0.96771 0.90430 1.23946 0.97493 1.00206 1.01653 1.85184 1.19411 1.77232 1.10098 1.21190 0.95934 1.09428 0.98715 1.20936 0.99743 0.99592 0.90826 1.21216 0.95845 1.00358 0.99070 1.21232 0.95378 0.98039 0.97422 1.21479 1.01770 1.02843 0.93337 1.18417 0.90950 0.95444 0.91155 0.91227 0.76877 0.85305 0.86130 0.86469 0.93426 0.87123 0.83927 0.84466 0.82929 0.83973 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.15 13.05 21.66 0.28 -47.87 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 0.99 42.57 29.55 68.60 2.03 44.59 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.33 -18.32 9.68 84.04 0.81 -17.50 16 8 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 9 N -0.56 -27.69 5.29 -306.98 -1.62 -29.32 16 10 C 0.41 18.55 6.54 87.66 0.57 19.13 16 11 O -0.62 -32.59 12.74 -3.07 -0.04 -32.63 16 12 C 0.05 1.62 5.27 85.56 0.45 2.07 16 13 N -0.48 -15.70 4.36 -701.01 -3.06 -18.76 16 14 C 0.05 1.42 4.96 86.80 0.43 1.85 16 15 C -0.08 -2.08 6.76 72.23 0.49 -1.60 16 16 S -0.16 -4.92 22.13 -56.49 -1.25 -6.17 16 17 C -0.14 -4.88 6.05 22.64 0.14 -4.74 16 18 C -0.09 -2.78 9.68 22.43 0.22 -2.57 16 19 C -0.14 -4.19 10.06 22.23 0.22 -3.96 16 20 C -0.10 -3.12 10.02 22.18 0.22 -2.90 16 21 C -0.17 -6.05 8.21 22.55 0.19 -5.87 16 22 C 0.14 5.24 4.42 38.53 0.17 5.41 16 23 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 24 H 0.40 18.41 7.90 -92.71 -0.73 17.68 16 25 H 0.13 3.43 7.95 -2.39 -0.02 3.41 16 26 H 0.12 3.52 5.82 -2.38 -0.01 3.51 16 27 H 0.12 2.87 7.92 -2.39 -0.02 2.85 16 28 H 0.05 1.88 6.19 -2.38 -0.01 1.86 16 29 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.14 2.64 8.14 -2.38 -0.02 2.62 16 31 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 34 H 0.13 4.25 5.38 -2.91 -0.02 4.23 16 Total: -1.00 -67.68 292.68 1.13 -66.56 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.41 Total: 34.21 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 4.38 Total: -10.62 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -4.40 Total: -95.94 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.04 Total: -32.63 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -1.25 Total: -6.17 kcal Total: -67.68 1.13 -66.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066472313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.546 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds