Wall clock time and date at job start Tue Mar 31 2020 00:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48500 * 109.47737 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47018 * 299.99938 * 3 2 1 6 6 H 1.48505 * 109.47203 * 59.99579 * 3 2 1 7 7 C 1.38811 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00005 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99983 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.54472 * 323.60872 * 10 9 7 12 12 C 1.54227 * 110.74097 * 200.66683 * 10 9 7 13 13 C 1.51310 * 103.55628 * 241.19986 * 12 10 9 14 14 O 1.21229 * 125.39881 * 180.24763 * 13 12 10 15 15 N 1.33880 * 109.20625 * 0.38192 * 13 12 10 16 16 C 1.40284 * 122.76297 * 179.84440 * 15 13 12 17 17 C 1.38811 * 120.03883 * 292.44068 * 16 15 13 18 18 C 1.38118 * 119.95892 * 179.70275 * 17 16 15 19 19 C 1.38481 * 120.03801 * 0.26925 * 18 17 16 20 20 F 1.35101 * 119.95698 * 179.97438 * 19 18 17 21 21 C 1.38468 * 120.08186 * 0.02562 * 19 18 17 22 22 C 1.38122 * 120.04140 * 359.97438 * 21 19 18 23 23 C 1.33873 * 114.47601 * 359.57793 * 15 13 12 24 24 O 1.21232 * 125.39760 * 180.24689 * 23 15 13 25 25 H 0.97003 * 120.00044 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99994 * 0.02562 * 9 7 2 27 27 H 1.08999 * 110.60479 * 359.93523 * 12 10 9 28 28 H 1.08996 * 110.60549 * 122.74652 * 12 10 9 29 29 H 1.08002 * 120.02096 * 359.97374 * 17 16 15 30 30 H 1.08002 * 119.98009 * 180.26012 * 18 17 16 31 31 H 1.08006 * 119.98133 * 180.02562 * 21 19 18 32 32 H 1.07998 * 120.01583 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 2.9608 -3.5772 -0.6061 12 6 1.1624 -4.8045 -0.5096 13 6 1.0972 -5.7524 0.6680 14 8 0.4904 -6.8016 0.6921 15 7 1.8135 -5.2474 1.6801 16 6 1.9433 -5.8972 2.9166 17 6 0.8416 -6.0311 3.7503 18 6 0.9699 -6.6765 4.9646 19 6 2.1980 -7.1849 5.3531 20 9 2.3218 -7.8155 6.5415 21 6 3.2995 -7.0469 4.5254 22 6 3.1750 -6.4021 3.3103 23 6 2.4002 -4.0741 1.4131 24 8 3.0951 -3.4454 2.1822 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 0.1695 -4.4329 -0.7626 28 1 1.6184 -5.2941 -1.3701 29 1 -0.1164 -5.6347 3.4476 30 1 0.1119 -6.7846 5.6117 31 1 4.2565 -7.4444 4.8298 32 1 4.0343 -6.2950 2.6649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100560596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:31 Heat of formation + Delta-G solvation = -57.106706 kcal Electronic energy + Delta-G solvation = -20945.220492 eV Core-core repulsion = 17400.406507 eV Total energy + Delta-G solvation = -3544.813985 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.03607 -41.85992 -38.73991 -38.19296 -35.62076 -34.91317 -32.50629 -31.36261 -30.22991 -28.45248 -25.40688 -23.82468 -23.33770 -22.84383 -21.47930 -19.67460 -17.98669 -17.73402 -17.35103 -16.88114 -16.12311 -15.74316 -15.67509 -15.17342 -14.69317 -14.43043 -13.91716 -13.78131 -13.76173 -13.65475 -13.40279 -13.17874 -13.01893 -12.45716 -12.18706 -11.49599 -11.34385 -11.07469 -11.00985 -10.46113 -10.17770 -10.13131 -9.95288 -9.76386 -9.29717 -9.13659 -8.61641 -7.36402 -6.03166 -3.35987 0.86443 1.05942 1.86921 2.68997 3.01979 3.33577 3.38077 3.40983 3.43267 4.08096 4.36270 4.49936 4.58237 4.66846 4.79027 4.86652 5.02986 5.16918 5.17590 5.29072 5.43518 5.68820 5.69519 5.90952 5.91821 5.95815 6.07661 6.13004 6.18653 6.68804 7.06100 7.54308 7.61792 8.09692 8.22671 9.24361 9.64625 10.00593 11.17660 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.004651 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.948787 B = 6019.270834 C = 6574.626111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.000 4.000 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.081 0.919 9 N -0.686 5.686 10 C 0.156 3.844 11 H 0.106 0.894 12 C -0.161 4.161 13 C 0.534 3.466 14 O -0.493 6.493 15 N -0.536 5.536 16 C 0.111 3.889 17 C -0.073 4.073 18 C -0.143 4.143 19 C 0.099 3.901 20 F -0.139 7.139 21 C -0.144 4.144 22 C -0.074 4.074 23 C 0.490 3.510 24 O -0.466 6.466 25 H 0.260 0.740 26 H 0.392 0.608 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 -13.786 3.903 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.745 3.255 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.387 4.387 8 H 0.099 0.901 9 N -0.326 5.326 10 C 0.039 3.961 11 H 0.124 0.876 12 C -0.201 4.201 13 C 0.324 3.676 14 O -0.365 6.365 15 N -0.279 5.279 16 C 0.022 3.978 17 C -0.093 4.093 18 C -0.162 4.162 19 C 0.080 3.920 20 F -0.118 7.118 21 C -0.163 4.163 22 C -0.093 4.093 23 C 0.276 3.724 24 O -0.332 6.332 25 H 0.070 0.930 26 H 0.228 0.772 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.599 -13.778 4.349 14.890 hybrid contribution 0.039 0.817 0.561 0.992 sum 3.638 -12.961 4.910 14.329 Atomic orbital electron populations 1.69663 1.05326 1.26459 1.55594 1.24840 0.95586 0.98222 1.01099 0.86008 0.79082 0.83100 0.77309 1.20074 1.21491 1.21536 1.19349 0.91594 0.83110 1.44621 0.90075 1.42444 1.05897 0.98832 1.85469 1.21017 0.97277 0.87705 0.90092 0.87645 1.22867 1.04942 0.95446 0.96881 1.21069 0.76000 0.85731 0.84758 1.90732 1.40612 1.22688 1.82431 1.45154 1.48139 1.22477 1.12087 1.17873 0.94481 0.98139 0.87332 1.21057 0.98831 0.97042 0.92341 1.20997 0.96862 1.00663 0.97682 1.17711 0.94845 0.97005 0.82444 1.91499 1.96691 1.79828 1.43750 1.20974 0.98565 1.02292 0.94481 1.20982 0.96871 0.95344 0.96151 1.24101 0.76801 0.77437 0.94055 1.90679 1.34204 1.53964 1.54393 0.92993 0.77197 0.85663 0.86059 0.84526 0.84045 0.84066 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.06 13.06 55.49 0.72 -25.34 16 2 C 0.00 0.00 5.50 -17.43 -0.10 -0.09 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.26 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.69 -15.39 5.20 -53.63 -0.28 -15.67 16 10 C 0.16 2.68 3.72 -68.14 -0.25 2.43 16 11 H 0.11 1.67 8.12 -51.93 -0.42 1.25 16 12 C -0.16 -2.15 6.79 -26.94 -0.18 -2.33 16 13 C 0.53 8.18 7.96 -11.09 -0.09 8.09 16 14 O -0.49 -8.45 17.61 5.60 0.10 -8.35 16 15 N -0.54 -8.72 2.61 -59.39 -0.16 -8.87 16 16 C 0.11 1.73 4.95 -83.56 -0.41 1.31 16 17 C -0.07 -1.05 9.81 -39.41 -0.39 -1.43 16 18 C -0.14 -1.77 10.02 -39.54 -0.40 -2.16 16 19 C 0.10 1.24 7.30 -39.41 -0.29 0.95 16 20 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 21 C -0.14 -1.71 10.02 -39.54 -0.40 -2.11 16 22 C -0.07 -1.01 9.79 -39.41 -0.39 -1.39 16 23 C 0.49 9.12 7.59 -11.08 -0.08 9.03 16 24 O -0.47 -10.33 17.59 5.60 0.10 -10.23 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.39 9.18 7.52 -40.82 -0.31 8.87 16 27 H 0.13 1.65 7.67 -51.93 -0.40 1.25 16 28 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 32 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -31.32 297.43 -5.92 -37.24 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -2.79 Total: 6.49 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -3.12 Total: 5.52 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.29 Total: -49.88 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.20 Total: -18.58 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.32 -5.92 -37.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100560596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.868 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds