Wall clock time and date at job start Tue Mar 31 2020 00:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48500 * 109.47737 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47018 * 299.99938 * 3 2 1 6 6 H 1.48505 * 109.47203 * 59.99579 * 3 2 1 7 7 C 1.38811 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00005 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99983 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.54472 * 323.60872 * 10 9 7 12 12 C 1.54227 * 110.74097 * 200.66683 * 10 9 7 13 13 C 1.51310 * 103.55628 * 241.19986 * 12 10 9 14 14 O 1.21229 * 125.39881 * 180.24763 * 13 12 10 15 15 N 1.33880 * 109.20625 * 0.38192 * 13 12 10 16 16 C 1.40284 * 122.76297 * 179.84440 * 15 13 12 17 17 C 1.38811 * 120.03883 * 292.44068 * 16 15 13 18 18 C 1.38118 * 119.95892 * 179.70275 * 17 16 15 19 19 C 1.38481 * 120.03801 * 0.26925 * 18 17 16 20 20 F 1.35101 * 119.95698 * 179.97438 * 19 18 17 21 21 C 1.38468 * 120.08186 * 0.02562 * 19 18 17 22 22 C 1.38122 * 120.04140 * 359.97438 * 21 19 18 23 23 C 1.33873 * 114.47601 * 359.57793 * 15 13 12 24 24 O 1.21232 * 125.39760 * 180.24689 * 23 15 13 25 25 H 0.97003 * 120.00044 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99994 * 0.02562 * 9 7 2 27 27 H 1.08999 * 110.60479 * 359.93523 * 12 10 9 28 28 H 1.08996 * 110.60549 * 122.74652 * 12 10 9 29 29 H 1.08002 * 120.02096 * 359.97374 * 17 16 15 30 30 H 1.08002 * 119.98009 * 180.26012 * 18 17 16 31 31 H 1.08006 * 119.98133 * 180.02562 * 21 19 18 32 32 H 1.07998 * 120.01583 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 2.9608 -3.5772 -0.6061 12 6 1.1624 -4.8045 -0.5096 13 6 1.0972 -5.7524 0.6680 14 8 0.4904 -6.8016 0.6921 15 7 1.8135 -5.2474 1.6801 16 6 1.9433 -5.8972 2.9166 17 6 0.8416 -6.0311 3.7503 18 6 0.9699 -6.6765 4.9646 19 6 2.1980 -7.1849 5.3531 20 9 2.3218 -7.8155 6.5415 21 6 3.2995 -7.0469 4.5254 22 6 3.1750 -6.4021 3.3103 23 6 2.4002 -4.0741 1.4131 24 8 3.0951 -3.4454 2.1822 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 0.1695 -4.4329 -0.7626 28 1 1.6184 -5.2941 -1.3701 29 1 -0.1164 -5.6347 3.4476 30 1 0.1119 -6.7846 5.6117 31 1 4.2565 -7.4444 4.8298 32 1 4.0343 -6.2950 2.6649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100560596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:30 Heat of formation + Delta-G solvation = -77.030257 kcal Electronic energy + Delta-G solvation = -20946.084442 eV Core-core repulsion = 17400.406507 eV Total energy + Delta-G solvation = -3545.677935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.02223 -43.17785 -39.82444 -39.62795 -37.14986 -36.42039 -34.12618 -32.37376 -31.78436 -29.70691 -26.93328 -25.51410 -24.39326 -24.03492 -22.83870 -20.90074 -19.56932 -18.99677 -18.64621 -18.14919 -17.56206 -16.99215 -16.69035 -16.54528 -16.24047 -15.62600 -15.51743 -15.32993 -15.06422 -14.76948 -14.73217 -14.37019 -14.21996 -13.62286 -13.51327 -12.97808 -12.87448 -12.66256 -12.36837 -12.18223 -11.91043 -11.87450 -11.38810 -11.17441 -10.89618 -10.30388 -9.74599 -9.21283 -8.03618 -5.35592 -0.20483 0.05015 0.50929 1.39536 1.50575 1.52030 1.59854 1.69132 2.31633 2.52797 3.07694 3.22091 3.25593 3.53621 3.57253 3.64451 3.72139 3.87868 3.99129 4.07970 4.19135 4.34664 4.72218 4.81937 4.84299 4.90473 4.91536 4.97940 5.11814 5.51958 5.66571 5.74038 6.15437 6.29980 6.82715 7.25621 7.82301 8.08885 9.17995 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.004651 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.948787 B = 6019.270834 C = 6574.626111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.058 4.058 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.299 1.299 7 C -0.250 4.250 8 H 0.081 0.919 9 N -0.701 5.701 10 C 0.151 3.849 11 H 0.126 0.874 12 C -0.142 4.142 13 C 0.538 3.462 14 O -0.507 6.507 15 N -0.532 5.532 16 C 0.077 3.923 17 C -0.089 4.089 18 C -0.139 4.139 19 C 0.097 3.903 20 F -0.136 7.136 21 C -0.136 4.136 22 C -0.082 4.082 23 C 0.496 3.504 24 O -0.507 6.507 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.132 0.868 28 H 0.165 0.835 29 H 0.135 0.865 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.330 -15.141 3.850 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.252 4.252 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.226 1.226 7 C -0.381 4.381 8 H 0.099 0.901 9 N -0.340 5.340 10 C 0.037 3.963 11 H 0.143 0.857 12 C -0.182 4.182 13 C 0.330 3.670 14 O -0.381 6.381 15 N -0.273 5.273 16 C -0.012 4.012 17 C -0.108 4.108 18 C -0.158 4.158 19 C 0.078 3.922 20 F -0.114 7.114 21 C -0.155 4.155 22 C -0.101 4.101 23 C 0.284 3.716 24 O -0.377 6.377 25 H 0.064 0.936 26 H 0.219 0.781 27 H 0.150 0.850 28 H 0.183 0.817 29 H 0.153 0.847 30 H 0.183 0.817 31 H 0.188 0.812 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.521 -15.199 4.290 16.427 hybrid contribution -0.192 1.043 0.663 1.251 sum 4.330 -14.155 4.953 15.609 Atomic orbital electron populations 1.69776 1.06461 1.26532 1.58054 1.25517 0.96308 1.01017 1.02345 0.85148 0.78476 0.79874 0.76667 1.19079 1.21278 1.22596 1.19611 0.91739 0.84428 1.42312 0.90102 1.42473 1.05689 0.99749 1.86122 1.21307 0.98494 0.87005 0.89535 0.85693 1.22861 1.04808 0.93300 0.97197 1.21332 0.75254 0.85587 0.84853 1.90732 1.41180 1.23496 1.82646 1.44962 1.47633 1.21878 1.12864 1.18220 0.95848 0.99668 0.87445 1.21145 0.98593 0.97962 0.93137 1.21225 0.97858 0.99535 0.97144 1.17835 0.95065 0.96782 0.82554 1.91512 1.96676 1.79707 1.43551 1.21268 0.99695 1.01037 0.93471 1.21156 0.96466 0.95476 0.97001 1.23928 0.76125 0.77663 0.93897 1.90656 1.36210 1.55315 1.55507 0.93609 0.78076 0.85026 0.81704 0.84748 0.81710 0.81189 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.88 13.06 21.65 0.28 -54.59 16 2 C -0.06 -3.15 5.50 84.86 0.47 -2.68 16 3 Si 0.97 44.23 29.55 68.60 2.03 46.26 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.25 -12.82 9.97 84.03 0.84 -11.98 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 9 N -0.70 -31.07 5.20 -323.59 -1.68 -32.75 16 10 C 0.15 4.98 3.72 44.86 0.17 5.15 16 11 H 0.13 3.67 8.12 -2.39 -0.02 3.65 16 12 C -0.14 -3.43 6.79 30.46 0.21 -3.22 16 13 C 0.54 15.59 7.96 87.99 0.70 16.29 16 14 O -0.51 -16.60 17.61 -2.87 -0.05 -16.65 16 15 N -0.53 -16.83 2.61 -579.66 -1.52 -18.34 16 16 C 0.08 2.34 4.95 38.06 0.19 2.53 16 17 C -0.09 -2.49 9.81 22.38 0.22 -2.27 16 18 C -0.14 -3.22 10.02 22.30 0.22 -2.99 16 19 C 0.10 2.22 7.30 22.38 0.16 2.38 16 20 F -0.14 -3.02 17.27 44.97 0.78 -2.25 16 21 C -0.14 -2.94 10.02 22.30 0.22 -2.72 16 22 C -0.08 -2.11 9.79 22.38 0.22 -1.89 16 23 C 0.50 18.13 7.59 87.99 0.67 18.80 16 24 O -0.51 -22.49 17.59 -2.88 -0.05 -22.54 16 25 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.38 18.04 7.52 -92.71 -0.70 17.34 16 27 H 0.13 3.17 7.67 -2.39 -0.02 3.15 16 28 H 0.17 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 30 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -67.52 297.43 4.55 -62.97 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.48 Total: 20.51 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 4.28 Total: 17.39 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -2.92 Total: -105.69 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.10 Total: -39.19 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -67.52 4.55 -62.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100560596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.062 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds