Wall clock time and date at job start Mon Mar 30 2020 23:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.07995 * 119.99918 * 119.99713 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.46933 * 90.00038 * 8 6 4 10 10 H 1.48499 * 109.47094 * 209.99977 * 8 6 4 11 11 H 1.48498 * 109.47121 * 330.00074 * 8 6 4 12 12 O 1.45206 * 109.47129 * 239.99943 * 2 1 3 13 13 C 1.34861 * 116.99743 * 90.00073 * 12 2 1 14 14 O 1.21576 * 120.00205 * 0.02562 * 13 12 2 15 15 C 1.46815 * 119.99527 * 179.97438 * 13 12 2 16 16 C 1.35899 * 125.14369 * 180.02562 * 15 13 12 17 17 C 1.46212 * 106.08187 * 180.02562 * 16 15 13 18 18 C 1.39776 * 134.16576 * 180.02562 * 17 16 15 19 19 C 1.36596 * 119.75522 * 180.02562 * 18 17 16 20 20 C 1.38838 * 120.46909 * 359.95831 * 19 18 17 21 21 C 1.37975 * 120.71762 * 0.02562 * 20 19 18 22 22 F 1.35098 * 120.09459 * 180.02562 * 21 20 19 23 23 C 1.39240 * 119.81557 * 359.97438 * 21 20 19 24 24 O 1.34749 * 133.23346 * 180.34566 * 23 21 20 25 25 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 28 28 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 29 29 H 1.08005 * 126.96130 * 0.02562 * 16 15 13 30 30 H 1.08002 * 120.12002 * 359.95677 * 18 17 16 31 31 H 1.07997 * 119.76340 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.64395 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0080 9 1 3.6296 -0.5460 4.4124 10 1 1.3430 -0.9493 5.1120 11 1 2.4858 -2.5662 3.7120 12 8 2.0140 -0.6845 -1.1856 13 6 2.2181 0.0675 -2.2863 14 8 1.9979 1.2628 -2.2553 15 6 2.7074 -0.5570 -3.5216 16 6 2.9489 0.0987 -4.6872 17 6 3.4171 -0.9141 -5.6321 18 6 3.8223 -0.8849 -6.9696 19 6 4.2137 -2.0400 -7.5847 20 6 4.2128 -3.2424 -6.8907 21 6 3.8169 -3.2936 -5.5699 22 9 3.8214 -4.4704 -4.9064 23 6 3.4138 -2.1287 -4.9224 24 8 2.9905 -1.8681 -3.6699 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7089 1.1614 3.4843 29 1 2.8210 1.1542 -4.8771 30 1 3.8247 0.0474 -7.5149 31 1 4.5264 -2.0176 -8.6182 32 1 4.5245 -4.1478 -7.3902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124275618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:56 Heat of formation + Delta-G solvation = -100.228095 kcal Electronic energy + Delta-G solvation = -20508.703068 eV Core-core repulsion = 16929.726448 eV Total energy + Delta-G solvation = -3578.976620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.079 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.07161 -42.63057 -39.53715 -38.04006 -36.00558 -33.33913 -32.81223 -30.62955 -30.07400 -29.39849 -25.42416 -24.96684 -23.18306 -22.14973 -21.28699 -20.15881 -18.32311 -18.04043 -17.10836 -16.80346 -16.59677 -16.11315 -15.66165 -15.53099 -15.22088 -14.76241 -14.60071 -13.76059 -13.46208 -13.19737 -13.00599 -12.41690 -12.32047 -12.17759 -12.04425 -11.79086 -11.32373 -11.11727 -10.92407 -10.44891 -10.38199 -10.29597 -10.18075 -9.69632 -9.01495 -8.98830 -8.54863 -8.42352 -6.23095 -4.30197 0.25135 0.91220 1.57249 2.22085 3.15754 3.21922 3.24728 3.27250 3.30309 3.37977 3.82641 4.26111 4.39620 4.46260 4.57678 4.82976 4.87068 5.10408 5.26089 5.37411 5.45649 5.65516 5.78626 5.98351 6.03665 6.24884 6.50039 6.77593 6.79972 6.83144 6.95082 7.46901 7.62988 7.79545 8.04373 8.37375 8.78458 9.35208 10.84490 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.003999 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.999974 B = 7000.219892 C = 7719.792361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 H 0.051 0.949 4 C -0.523 4.523 5 H 0.071 0.929 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 O -0.338 6.338 13 C 0.534 3.466 14 O -0.487 6.487 15 C 0.025 3.975 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.070 4.070 19 C -0.114 4.114 20 C -0.123 4.123 21 C 0.115 3.885 22 F -0.129 7.129 23 C 0.031 3.969 24 O -0.157 6.157 25 H 0.018 0.982 26 H 0.039 0.961 27 H 0.103 0.897 28 H 0.267 0.733 29 H 0.179 0.821 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.406 -4.518 -19.678 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.561 4.561 5 H 0.089 0.911 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.741 3.259 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.253 6.253 13 C 0.376 3.624 14 O -0.377 6.377 15 C -0.024 4.024 16 C -0.143 4.143 17 C -0.114 4.114 18 C -0.088 4.088 19 C -0.132 4.132 20 C -0.142 4.142 21 C 0.095 3.905 22 F -0.107 7.107 23 C -0.018 4.018 24 O -0.057 6.057 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.196 0.804 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.196 -4.309 -19.189 20.342 hybrid contribution 0.192 -0.442 0.968 1.081 sum 5.389 -4.751 -18.221 19.586 Atomic orbital electron populations 1.22195 0.97100 1.00476 1.01661 1.20854 0.91730 0.94038 0.77168 0.93082 1.21016 1.32755 1.13702 0.88644 0.91087 1.24879 0.94809 0.95089 0.99064 1.69888 1.35914 1.22521 1.24345 0.86231 0.78556 0.79970 0.81177 1.20317 1.20870 1.19500 1.86704 1.74975 1.42816 1.20792 1.19288 0.75428 0.84694 0.82994 1.90900 1.48631 1.14567 1.83632 1.21395 1.04496 0.81135 0.95364 1.22727 1.01350 1.00456 0.89808 1.19768 1.04493 0.91652 0.95530 1.20422 0.97242 0.99433 0.91674 1.20611 1.00935 0.91087 1.00578 1.20986 1.01615 1.00509 0.91103 1.16541 1.05266 0.78147 0.90553 1.91551 1.94337 1.44356 1.80475 1.19786 1.02420 0.95297 0.84331 1.84264 1.67962 1.25754 1.27728 0.96328 0.94144 0.87887 0.92277 0.80409 0.84344 0.84079 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.33 37.16 0.35 -3.62 16 2 C 0.21 5.77 2.57 -27.88 -0.07 5.70 16 3 H 0.05 1.48 7.16 -51.93 -0.37 1.11 16 4 C -0.52 -14.82 8.90 -34.44 -0.31 -15.13 16 5 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.44 16 8 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 O -0.34 -8.37 9.88 -42.77 -0.42 -8.79 16 13 C 0.53 11.59 7.91 34.20 0.27 11.86 16 14 O -0.49 -11.16 16.09 -19.32 -0.31 -11.47 16 15 C 0.02 0.45 7.10 -36.95 -0.26 0.19 16 16 C -0.12 -1.76 10.81 -37.22 -0.40 -2.16 16 17 C -0.11 -1.44 6.38 -105.20 -0.67 -2.11 16 18 C -0.07 -0.62 10.06 -39.60 -0.40 -1.01 16 19 C -0.11 -0.84 9.98 -39.95 -0.40 -1.24 16 20 C -0.12 -1.08 9.99 -39.46 -0.39 -1.47 16 21 C 0.11 1.45 7.32 -39.31 -0.29 1.16 16 22 F -0.13 -1.80 17.27 2.25 0.04 -1.76 16 23 C 0.03 0.47 7.39 -38.29 -0.28 0.19 16 24 O -0.16 -2.85 10.60 1.90 0.02 -2.83 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.10 2.76 6.07 -51.93 -0.32 2.44 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.18 2.09 8.06 -52.48 -0.42 1.67 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 296.91 15.07 4.47 4.47 Total: -1.00 -30.97 296.91 -6.32 -37.28 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -2.77 Total: -2.64 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.95 Total: -5.98 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.63 Total: -24.44 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.71 Total: -23.09 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.97 -6.32 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124275618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.945 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds