Wall clock time and date at job start Mon Mar 30 2020 23:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 O 1.45194 * 109.46979 * 120.00212 * 2 1 3 13 13 C 1.34854 * 117.00133 * 270.00048 * 12 2 1 14 14 O 1.21575 * 120.00292 * 0.02562 * 13 12 2 15 15 C 1.46817 * 120.00346 * 180.02562 * 13 12 2 16 16 C 1.35894 * 125.14750 * 179.97438 * 15 13 12 17 17 C 1.46226 * 106.08076 * 180.02562 * 16 15 13 18 18 C 1.39772 * 134.16598 * 180.02562 * 17 16 15 19 19 C 1.36592 * 119.75624 * 180.02562 * 18 17 16 20 20 C 1.38842 * 120.46758 * 359.96188 * 19 18 17 21 21 C 1.37976 * 120.71778 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.09612 * 180.02562 * 21 20 19 23 23 C 1.39237 * 119.81298 * 0.02562 * 21 20 19 24 24 O 1.34755 * 133.22765 * 180.34085 * 23 21 20 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 29 29 H 1.07997 * 126.96212 * 359.97438 * 16 15 13 30 30 H 1.08005 * 120.12281 * 359.95157 * 18 17 16 31 31 H 1.08002 * 119.76726 * 179.97438 * 19 18 17 32 32 H 1.08003 * 119.64477 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 8 2.0140 -0.6845 1.1855 13 6 2.2181 0.0674 2.2862 14 8 1.9969 1.2625 2.2556 15 6 2.7073 -0.5571 3.5216 16 6 2.9488 0.0985 4.6871 17 6 3.4182 -0.9141 5.6318 18 6 3.8230 -0.8851 6.9693 19 6 4.2168 -2.0397 7.5836 20 6 4.2171 -3.2419 6.8891 21 6 3.8211 -3.2930 5.5684 22 9 3.8257 -4.4698 4.9048 23 6 3.4165 -2.1283 4.9215 24 8 2.9815 -1.8698 3.6725 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1620 -3.4843 29 1 2.8209 1.1540 4.8770 30 1 3.8255 0.0472 7.5147 31 1 4.5301 -2.0173 8.6170 32 1 4.5307 -4.1470 7.3881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124275828.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:58 Heat of formation + Delta-G solvation = -118.163778 kcal Electronic energy + Delta-G solvation = -20509.541631 eV Core-core repulsion = 16929.787262 eV Total energy + Delta-G solvation = -3579.754369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.079 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.03120 -43.74580 -41.29967 -38.91052 -37.86978 -35.42654 -33.90719 -32.03446 -31.30652 -30.74389 -27.53420 -26.33330 -24.09874 -23.52802 -22.64844 -21.77867 -19.81370 -19.07610 -18.77438 -18.08579 -17.95779 -17.73466 -16.89671 -16.82024 -16.48660 -16.19366 -16.03588 -15.15885 -14.58558 -14.45148 -14.36564 -14.11378 -14.02832 -13.32319 -13.18121 -13.10174 -12.91872 -12.85988 -12.58152 -12.47381 -12.23102 -12.00059 -11.73659 -11.35088 -11.10666 -10.65795 -9.94469 -9.36983 -8.34450 -6.51781 -0.81195 0.05211 0.44812 1.03278 1.39429 1.41545 1.52759 1.64489 1.82884 2.35783 2.45013 2.92339 2.96123 3.26946 3.58565 3.68539 3.78125 4.09731 4.16468 4.39191 4.43205 4.46619 4.70853 4.72593 4.92058 4.93836 5.00207 5.15834 5.26516 5.36739 5.41881 5.51511 5.72863 5.83684 5.93072 6.45976 6.68174 7.18885 8.73542 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.003999 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.227013 B = 6999.835306 C = 7719.721256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.215 3.785 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.062 0.938 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.984 3.016 9 H -0.266 1.266 10 H -0.272 1.272 11 H -0.269 1.269 12 O -0.356 6.356 13 C 0.533 3.467 14 O -0.511 6.511 15 C -0.031 4.031 16 C -0.077 4.077 17 C -0.130 4.130 18 C -0.052 4.052 19 C -0.099 4.099 20 C -0.091 4.091 21 C 0.073 3.927 22 F -0.147 7.147 23 C 0.005 3.995 24 O -0.195 6.195 25 H 0.043 0.957 26 H 0.029 0.971 27 H 0.088 0.912 28 H 0.274 0.726 29 H 0.203 0.797 30 H 0.178 0.822 31 H 0.193 0.807 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.714 -5.002 22.866 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.038 0.962 4 C -0.593 4.593 5 H 0.080 0.920 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.807 3.193 9 H -0.191 1.191 10 H -0.197 1.197 11 H -0.193 1.193 12 O -0.272 6.272 13 C 0.378 3.622 14 O -0.403 6.403 15 C -0.078 4.078 16 C -0.096 4.096 17 C -0.131 4.131 18 C -0.070 4.070 19 C -0.116 4.116 20 C -0.109 4.109 21 C 0.053 3.947 22 F -0.125 7.125 23 C -0.044 4.044 24 O -0.097 6.097 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.220 0.780 30 H 0.196 0.804 31 H 0.210 0.790 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.504 -4.782 22.409 23.818 hybrid contribution -0.129 -0.327 -1.632 1.669 sum 6.375 -5.108 20.777 22.325 Atomic orbital electron populations 1.22021 0.96172 1.00552 1.01415 1.20593 0.92477 0.92478 0.78186 0.96168 1.21254 1.33950 1.14106 0.90011 0.91961 1.25794 0.94548 0.95626 1.01915 1.69987 1.36194 1.23309 1.25505 0.85167 0.78900 0.78218 0.77036 1.19121 1.19660 1.19336 1.86673 1.75794 1.43358 1.21377 1.19777 0.74616 0.84624 0.83200 1.90851 1.49937 1.15267 1.84203 1.20823 1.09980 0.82121 0.94900 1.23163 0.96645 1.01529 0.88302 1.19993 1.06148 0.89901 0.97059 1.20990 0.94498 1.01879 0.89620 1.21254 0.98508 0.89436 1.02442 1.21598 0.97612 1.02780 0.88943 1.17109 1.08216 0.77226 0.92138 1.91500 1.94801 1.45082 1.81150 1.20427 1.02950 0.97350 0.83683 1.84160 1.69421 1.25646 1.30471 0.93781 0.95183 0.89343 0.91674 0.77980 0.80447 0.78976 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.63 9.33 71.98 0.67 -6.96 16 2 C 0.22 12.34 2.56 29.85 0.08 12.41 16 3 H 0.02 1.27 7.16 -2.39 -0.02 1.25 16 4 C -0.56 -32.94 8.90 25.60 0.23 -32.71 16 5 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -52.64 11.32 21.45 0.24 -52.40 16 8 Si 0.98 43.89 29.54 68.60 2.03 45.91 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 O -0.36 -18.99 9.88 -55.92 -0.55 -19.54 16 13 C 0.53 24.80 7.91 70.07 0.55 25.35 16 14 O -0.51 -24.80 16.09 19.59 0.32 -24.49 16 15 C -0.03 -1.16 7.10 23.97 0.17 -0.99 16 16 C -0.08 -2.14 10.81 23.80 0.26 -1.89 16 17 C -0.13 -3.04 6.38 -20.24 -0.13 -3.17 16 18 C -0.05 -0.65 10.06 22.26 0.22 -0.43 16 19 C -0.10 -0.83 9.98 22.03 0.22 -0.61 16 20 C -0.09 -1.20 9.99 22.35 0.22 -0.98 16 21 C 0.07 1.77 7.32 22.45 0.16 1.94 16 22 F -0.15 -4.18 17.27 44.97 0.78 -3.40 16 23 C 0.00 0.14 7.39 23.10 0.17 0.31 16 24 O -0.19 -7.58 10.60 -12.70 -0.13 -7.72 16 25 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 4.93 6.07 -2.39 -0.01 4.92 16 28 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 29 H 0.20 4.39 8.06 -2.91 -0.02 4.36 16 30 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.19 -0.15 8.06 -2.91 -0.02 -0.17 16 32 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -73.89 296.91 7.12 -66.77 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: 1.16 Total: 0.93 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 3.28 Total: -6.07 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.24 Total: -52.40 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.37 Total: -51.75 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.89 7.12 -66.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124275828.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.391 kcal (2) G-P(sol) polarization free energy of solvation -73.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds