Wall clock time and date at job start Tue Mar 31 2020 00:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31394 * 1 3 3 Si 1.86795 * 120.00047 * 2 1 4 4 H 1.48503 * 109.47271 * 269.99664 * 3 2 1 5 5 H 1.48500 * 109.47486 * 29.99377 * 3 2 1 6 6 H 1.48498 * 109.47335 * 149.99958 * 3 2 1 7 7 C 1.39019 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99876 * 0.02562 * 7 2 1 9 9 N 1.36906 * 119.99741 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99915 * 180.02562 * 9 7 2 11 11 O 1.21637 * 120.00098 * 359.97438 * 10 9 7 12 12 C 1.47347 * 120.00284 * 179.97438 * 10 9 7 13 13 C 1.39897 * 120.10795 * 0.02562 * 12 10 9 14 14 C 1.37528 * 119.95199 * 180.02562 * 13 12 10 15 15 C 1.39301 * 120.18356 * 359.97438 * 14 13 12 16 16 C 1.39011 * 120.13865 * 359.97134 * 15 14 13 17 17 C 1.37989 * 120.08778 * 0.02943 * 16 15 14 18 18 F 1.35099 * 120.07417 * 180.02562 * 17 16 15 19 19 N 1.39401 * 119.86956 * 180.02562 * 15 14 13 20 20 C 1.34520 * 120.55664 * 18.60702 * 19 15 14 21 21 O 1.21274 * 119.59280 * 180.72442 * 20 19 15 22 22 C 1.50490 * 120.81681 * 0.69163 * 20 19 15 23 23 C 1.50713 * 120.03351 * 180.02562 * 14 13 12 24 24 H 0.96996 * 119.99609 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00476 * 359.97438 * 9 7 2 26 26 H 1.08002 * 120.02258 * 0.04721 * 13 12 10 27 27 H 1.08000 * 119.95496 * 180.02562 * 16 15 14 28 28 H 0.97006 * 119.72185 * 198.62114 * 19 15 14 29 29 H 1.08996 * 109.40318 * 204.69441 * 22 20 19 30 30 H 1.08997 * 109.39996 * 84.93991 * 22 20 19 31 31 H 1.09002 * 109.46897 * 266.00325 * 23 14 13 32 32 H 1.09001 * 109.46843 * 25.99985 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5455 1.4402 0.7000 7 6 2.0090 -1.2039 0.0005 8 1 1.4690 -2.1392 0.0005 9 7 3.3781 -1.2039 0.0011 10 6 4.0520 -2.3711 0.0011 11 8 3.4438 -3.4245 0.0011 12 6 5.5254 -2.3711 0.0011 13 6 6.2273 -1.1609 0.0016 14 6 7.6025 -1.1647 0.0011 15 6 8.2996 -2.3708 0.0005 16 6 7.6080 -3.5767 0.0011 17 6 6.2281 -3.5827 0.0017 18 9 5.5563 -4.7548 0.0028 19 7 9.6936 -2.3670 0.0005 20 6 10.3745 -1.2675 0.3706 21 8 11.5870 -1.2792 0.3515 22 6 9.6502 -0.0228 0.8074 23 6 8.3605 0.1380 0.0022 24 1 -0.4849 0.8400 -0.0004 25 1 3.8631 -0.3638 0.0007 26 1 5.6894 -0.2244 0.0028 27 1 8.1514 -4.5100 0.0011 28 1 10.1767 -3.1639 -0.2688 29 1 10.2897 0.8446 0.6439 30 1 9.4080 -0.0980 1.8675 31 1 8.6047 0.4171 -1.0227 32 1 7.7449 0.9160 0.4539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156180858.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:18 Heat of formation + Delta-G solvation = -117.221329 kcal Electronic energy + Delta-G solvation = -20909.498125 eV Core-core repulsion = 17362.077374 eV Total energy + Delta-G solvation = -3547.420750 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.88972 -42.09490 -40.58220 -39.30654 -36.21900 -36.12385 -34.96142 -33.86856 -31.37907 -30.55085 -27.20722 -25.46248 -24.78693 -23.84588 -21.83794 -20.96785 -20.07138 -19.15091 -18.64370 -17.88011 -17.21050 -17.05696 -16.79847 -16.69765 -16.36848 -15.91536 -15.45290 -15.26251 -15.12649 -14.68998 -14.53628 -14.36372 -14.20645 -13.83690 -13.46939 -13.01777 -12.85534 -12.59707 -12.44140 -12.07900 -11.96334 -11.74606 -11.54047 -11.16199 -10.62164 -10.33691 -9.92050 -9.21259 -8.47484 -6.06110 -0.44308 0.03115 1.23900 1.29286 1.40970 1.46134 1.85393 1.95492 2.21566 2.59881 2.71393 3.12893 3.19016 3.37880 3.48828 3.62074 3.78501 4.06071 4.10208 4.27499 4.32304 4.61374 4.69722 4.86880 4.91998 4.99890 5.11926 5.13097 5.45689 5.52383 5.65519 5.87629 5.99549 6.49158 6.77553 6.85955 7.26251 7.83455 8.69210 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.005390 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.108300 B = 5193.411490 C = 6483.934373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.958 3.042 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.220 1.220 7 C -0.333 4.333 8 H 0.056 0.944 9 N -0.564 5.564 10 C 0.477 3.523 11 O -0.623 6.623 12 C -0.183 4.183 13 C -0.031 4.031 14 C -0.125 4.125 15 C 0.208 3.792 16 C -0.181 4.181 17 C 0.152 3.848 18 F -0.136 7.136 19 N -0.651 5.651 20 C 0.523 3.477 21 O -0.563 6.563 22 C -0.135 4.135 23 C -0.074 4.074 24 H 0.284 0.716 25 H 0.391 0.609 26 H 0.157 0.843 27 H 0.170 0.830 28 H 0.420 0.580 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.329 5.838 0.574 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.776 3.224 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.143 1.143 7 C -0.462 4.462 8 H 0.074 0.926 9 N -0.204 5.204 10 C 0.267 3.733 11 O -0.510 6.510 12 C -0.188 4.188 13 C -0.050 4.050 14 C -0.128 4.128 15 C 0.110 3.890 16 C -0.202 4.202 17 C 0.130 3.870 18 F -0.114 7.114 19 N -0.295 5.295 20 C 0.313 3.687 21 O -0.441 6.441 22 C -0.174 4.174 23 C -0.111 4.111 24 H 0.093 0.907 25 H 0.229 0.771 26 H 0.175 0.825 27 H 0.187 0.813 28 H 0.259 0.741 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.120 0.880 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 22.320 5.411 0.634 22.975 hybrid contribution -0.639 -0.487 -0.168 0.821 sum 21.681 4.924 0.465 22.238 Atomic orbital electron populations 1.69785 1.08334 1.29809 1.48166 1.26239 0.96547 1.02973 0.95315 0.85481 0.80124 0.76182 0.80623 1.17386 1.19480 1.14293 1.19058 0.81105 0.95375 1.50675 0.92551 1.41834 1.05997 1.07144 1.65420 1.18186 0.87565 0.83936 0.83617 1.90683 1.70870 1.32512 1.56954 1.20059 0.92412 0.94705 1.11619 1.21023 0.93306 0.96246 0.94458 1.19704 0.92700 0.95102 1.05276 1.17305 0.82845 0.92840 0.96053 1.20650 0.90625 0.99682 1.09280 1.17618 0.89979 0.80234 0.99124 1.91535 1.81133 1.45665 1.93079 1.43505 1.04178 1.17204 1.64595 1.21415 0.87173 0.85534 0.74529 1.90781 1.15557 1.84116 1.53683 1.21812 0.97354 0.94810 1.03434 1.20602 0.94344 0.93244 1.02902 0.90667 0.77139 0.82509 0.81269 0.74071 0.85139 0.86096 0.88022 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.80 13.96 21.68 0.30 -53.50 16 2 C -0.01 -0.56 5.50 84.95 0.47 -0.09 16 3 Si 0.96 35.43 27.74 68.60 1.90 37.33 16 4 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.22 -6.39 6.52 99.48 0.65 -5.75 16 7 C -0.33 -19.29 10.16 84.09 0.85 -18.43 16 8 H 0.06 3.92 7.38 -2.91 -0.02 3.90 16 9 N -0.56 -26.59 5.03 -310.05 -1.56 -28.15 16 10 C 0.48 22.95 7.71 86.64 0.67 23.62 16 11 O -0.62 -36.88 14.90 -4.15 -0.06 -36.94 16 12 C -0.18 -6.35 5.88 -20.04 -0.12 -6.47 16 13 C -0.03 -0.72 9.16 22.50 0.21 -0.52 16 14 C -0.12 -2.16 5.65 -19.77 -0.11 -2.27 16 15 C 0.21 3.74 6.51 38.38 0.25 3.99 16 16 C -0.18 -3.95 9.87 22.40 0.22 -3.73 16 17 C 0.15 4.94 7.28 22.65 0.16 5.11 16 18 F -0.14 -5.43 15.54 44.97 0.70 -4.73 16 19 N -0.65 -9.79 5.34 -304.03 -1.62 -11.42 16 20 C 0.52 8.69 7.71 87.63 0.68 9.37 16 21 O -0.56 -13.59 17.91 -3.01 -0.05 -13.64 16 22 C -0.13 -1.30 6.08 29.75 0.18 -1.12 16 23 C -0.07 -0.70 5.99 29.82 0.18 -0.52 16 24 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 25 H 0.39 14.59 3.78 -92.70 -0.35 14.24 16 26 H 0.16 3.04 6.39 -2.91 -0.02 3.02 16 27 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.42 5.13 8.82 -92.70 -0.82 4.31 16 29 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.12 0.64 8.06 -2.39 -0.02 0.62 16 Total: -1.00 -82.74 283.87 3.23 -79.52 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.02 Total: 22.59 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 3.64 Total: 8.93 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -2.88 Total: -93.06 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.12 Total: -50.58 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.70 Total: -4.73 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 1.90 Total: 37.33 kcal Total: -82.74 3.23 -79.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156180858.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.706 kcal (2) G-P(sol) polarization free energy of solvation -82.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds