Wall clock time and date at job start Tue Mar 31 2020 00:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48500 * 109.47178 * 270.00497 * 3 2 1 5 5 H 1.48497 * 109.47109 * 30.00222 * 3 2 1 6 6 H 1.48500 * 109.46955 * 150.00205 * 3 2 1 7 7 C 1.37876 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00398 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99749 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46812 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99702 * 190.00015 * 10 9 7 12 12 C 1.50696 * 109.47174 * 75.52138 * 11 10 9 13 13 C 1.34521 * 125.79276 * 84.87122 * 12 11 10 14 14 C 1.41381 * 106.84160 * 179.97438 * 13 12 11 15 15 C 1.34510 * 106.84025 * 0.02562 * 14 13 12 16 16 O 1.34302 * 108.42458 * 0.02562 * 15 14 13 17 17 C 1.46896 * 111.00357 * 66.04617 * 10 9 7 18 18 C 1.50700 * 109.47554 * 199.76263 * 17 10 9 19 19 C 1.33635 * 126.03927 * 84.46230 * 18 17 10 20 20 N 1.31779 * 114.50462 * 179.79397 * 19 18 17 21 21 C 1.29026 * 117.12223 * 0.51681 * 20 19 18 22 22 S 1.70986 * 110.16861 * 359.71707 * 21 20 19 23 23 H 0.96997 * 120.00250 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47231 * 60.00472 * 9 7 2 25 25 H 1.08998 * 109.47115 * 300.00265 * 9 7 2 26 26 H 1.08991 * 109.47080 * 315.51758 * 11 10 9 27 27 H 1.09003 * 109.47027 * 195.51923 * 11 10 9 28 28 H 1.07999 * 126.57289 * 0.02562 * 13 12 11 29 29 H 1.08000 * 126.57486 * 180.02562 * 14 13 12 30 30 H 1.08005 * 125.78563 * 180.26254 * 15 14 13 31 31 H 1.09005 * 109.47046 * 319.76475 * 17 10 9 32 32 H 1.09000 * 109.47069 * 79.76062 * 17 10 9 33 33 H 1.08007 * 122.74441 * 359.97438 * 19 18 17 34 34 H 1.07997 * 124.92200 * 179.68473 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5213 -4.8935 -0.2387 12 6 1.1580 -5.0046 -1.6970 13 6 1.9648 -5.4498 -2.6770 14 6 1.2229 -5.3860 -3.8789 15 6 0.0075 -4.9051 -3.5616 16 8 -0.0259 -4.6750 -2.2388 17 6 2.9711 -3.6540 1.2527 18 6 4.2299 -4.4569 1.0484 19 6 5.3824 -3.9991 0.5505 20 7 6.3413 -4.8998 0.4748 21 6 6.0587 -6.0946 0.8715 22 16 4.4396 -6.1673 1.4165 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 0.6155 -4.9387 0.3659 27 1 2.1821 -5.7161 0.0348 28 1 2.9834 -5.7913 -2.5667 29 1 1.5663 -5.6692 -4.8629 30 1 -0.8052 -4.7366 -4.2527 31 1 3.2323 -2.6383 1.5502 32 1 2.3673 -4.1172 2.0331 33 1 5.5178 -2.9739 0.2387 34 1 6.7451 -6.9283 0.8605 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159558683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:16 Heat of formation + Delta-G solvation = 71.244467 kcal Electronic energy + Delta-G solvation = -19092.603335 eV Core-core repulsion = 16119.568250 eV Total energy + Delta-G solvation = -2973.035084 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06073 -39.38492 -36.96112 -32.78943 -32.48678 -31.38079 -29.76669 -27.26937 -26.31742 -24.50147 -23.36002 -21.37754 -20.97336 -20.05542 -19.43788 -17.81691 -16.94702 -16.49623 -15.72167 -15.35528 -14.93074 -14.49757 -14.35865 -13.77457 -13.66736 -13.58717 -13.20600 -12.42933 -12.35421 -12.17563 -11.99628 -11.79367 -11.52117 -11.25675 -10.81610 -10.72073 -10.55947 -10.03455 -9.49371 -9.47370 -9.35306 -9.05154 -8.68803 -8.49132 -8.01507 -7.50743 -6.08072 -4.10565 0.93274 1.54829 1.92700 2.19811 3.03860 3.12872 3.29552 3.36015 3.38474 3.47647 4.38068 4.52936 4.91390 5.12943 5.27918 5.29680 5.38833 5.43848 5.44725 5.55938 5.72971 5.80647 6.15409 6.21899 6.28698 6.35432 6.47197 6.53803 6.93368 7.10039 7.17967 7.61480 7.69749 7.90070 7.93042 8.03618 8.37882 8.95874 9.53900 11.02494 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.011375 B = 0.007487 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.872818 B = 3738.691772 C = 5527.227109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.525 5.525 11 C 0.126 3.874 12 C 0.020 3.980 13 C -0.203 4.203 14 C -0.218 4.218 15 C -0.048 4.048 16 O -0.171 6.171 17 C 0.132 3.868 18 C -0.178 4.178 19 C 0.039 3.961 20 N -0.468 5.468 21 C 0.005 3.995 22 S 0.085 5.915 23 H 0.262 0.738 24 H 0.039 0.961 25 H -0.005 1.005 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.196 0.804 31 H 0.116 0.884 32 H 0.040 0.960 33 H 0.179 0.821 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -13.299 0.125 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.250 5.250 11 C -0.002 4.002 12 C -0.031 4.031 13 C -0.223 4.223 14 C -0.237 4.237 15 C -0.116 4.116 16 O -0.066 6.066 17 C 0.002 3.998 18 C -0.300 4.300 19 C -0.110 4.110 20 N -0.181 5.181 21 C -0.293 4.293 22 S 0.336 5.664 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.013 0.987 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.213 0.787 31 H 0.134 0.866 32 H 0.058 0.942 33 H 0.196 0.804 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 4.765 -13.662 0.121 14.470 hybrid contribution 0.154 1.570 -0.073 1.579 sum 4.918 -12.092 0.048 13.054 Atomic orbital electron populations 1.69960 1.06067 1.26895 1.50433 1.24971 0.94837 0.99290 0.95237 0.86517 0.79728 0.83093 0.78214 1.20616 1.21289 1.19731 1.21101 0.93457 0.89736 1.50772 0.91718 1.19840 0.89774 0.86714 0.96776 1.62088 1.28069 1.02310 1.32545 1.20511 0.97702 0.94667 0.87296 1.22248 0.83732 1.00927 0.96236 1.21380 1.00644 1.08380 0.91885 1.21719 0.94837 1.07693 0.99444 1.23880 1.00265 1.04923 0.82513 1.84064 1.34989 1.66124 1.21417 1.20476 0.88405 0.99820 0.91079 1.26242 1.01738 0.95165 1.06824 1.21779 0.87578 1.00731 1.00961 1.66323 1.34070 1.00657 1.17078 1.28206 0.98302 0.98731 1.04017 1.83910 1.12027 1.09508 1.60968 0.92826 0.94285 0.98683 0.93560 0.89430 0.84236 0.84088 0.78727 0.86590 0.94236 0.80425 0.79066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.81 8.23 -34.44 -0.28 -14.09 16 8 H 0.06 1.70 7.31 -52.49 -0.38 1.32 16 9 C 0.19 4.85 4.55 -4.98 -0.02 4.83 16 10 N -0.53 -10.74 4.34 -238.97 -1.04 -11.78 16 11 C 0.13 2.28 5.34 -4.97 -0.03 2.25 16 12 C 0.02 0.37 6.15 -35.62 -0.22 0.15 16 13 C -0.20 -3.51 10.81 -39.70 -0.43 -3.94 16 14 C -0.22 -3.39 10.91 -39.70 -0.43 -3.82 16 15 C -0.05 -0.75 12.09 29.41 0.36 -0.40 16 16 O -0.17 -3.30 10.30 5.71 0.06 -3.25 16 17 C 0.13 2.35 5.33 -4.98 -0.03 2.33 16 18 C -0.18 -2.80 5.56 -35.92 -0.20 -3.00 16 19 C 0.04 0.64 11.25 -19.19 -0.22 0.42 16 20 N -0.47 -7.22 10.54 -15.75 -0.17 -7.39 16 21 C 0.01 0.07 12.23 51.58 0.63 0.70 16 22 S 0.09 1.06 22.07 -107.50 -2.37 -1.32 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.04 1.09 7.13 -51.93 -0.37 0.72 16 25 H 0.00 -0.12 8.12 -51.93 -0.42 -0.54 16 26 H 0.05 0.83 8.00 -51.93 -0.42 0.41 16 27 H 0.09 1.37 6.25 -51.93 -0.32 1.04 16 28 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.20 2.27 8.06 -52.48 -0.42 1.84 16 31 H 0.12 2.24 6.58 -51.93 -0.34 1.90 16 32 H 0.04 0.65 8.00 -51.93 -0.42 0.24 16 33 H 0.18 2.90 8.06 -52.48 -0.42 2.48 16 34 H 0.19 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -30.98 309.27 -8.03 -39.01 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -3.92 Total: 2.25 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.97 Total: -13.04 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.47 Total: -44.55 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: 0.06 Total: -3.25 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.37 Total: -1.32 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.98 -8.03 -39.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159558683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.257 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds