Wall clock time and date at job start Tue Mar 31 2020 00:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47218 * 239.99449 * 3 2 1 5 5 H 1.48498 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46960 * 119.99806 * 3 2 1 7 7 C 1.38952 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00083 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99556 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99775 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99934 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99912 * 179.97438 * 10 9 7 13 13 H 1.09005 * 109.46392 * 60.01766 * 12 10 9 14 14 C 1.52910 * 109.45361 * 300.04858 * 12 10 9 15 15 C 1.50498 * 109.89730 * 288.59669 * 14 12 10 16 16 O 1.21287 * 119.62124 * 144.81211 * 15 14 12 17 17 N 1.34421 * 120.72688 * 324.56086 * 15 14 12 18 18 C 1.39821 * 120.56517 * 1.28385 * 17 15 14 19 19 C 1.38825 * 120.18256 * 198.30174 * 18 17 15 20 20 C 1.38324 * 119.87806 * 179.69811 * 19 18 17 21 21 F 1.35098 * 119.98021 * 180.02562 * 20 19 18 22 22 C 1.38538 * 120.03586 * 359.97438 * 20 19 18 23 23 C 1.38234 * 120.12012 * 0.02562 * 22 20 19 24 24 C 1.38103 * 120.06168 * 0.03381 * 23 22 20 25 25 H 0.97002 * 119.99989 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00067 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.40577 * 48.72810 * 14 12 10 28 28 H 1.09003 * 109.39996 * 168.47238 * 14 12 10 29 29 H 0.96994 * 119.66584 * 181.04880 * 17 15 14 30 30 H 1.08005 * 120.05839 * 359.67232 * 19 18 17 31 31 H 1.07998 * 119.93497 * 180.02562 * 22 20 19 32 32 H 1.08006 * 119.96850 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 1 0.6170 -4.9209 -0.8888 14 6 0.3644 -4.9427 1.2495 15 6 1.2232 -5.1436 2.4690 16 8 0.9034 -4.6276 3.5190 17 7 2.3378 -5.8925 2.4083 18 6 2.7360 -6.4784 1.2028 19 6 3.6383 -7.5334 1.2041 20 6 4.0231 -8.1125 0.0083 21 9 4.9008 -9.1396 0.0072 22 6 3.5082 -7.6405 -1.1881 23 6 2.6096 -6.5901 -1.1902 24 6 2.2233 -6.0078 0.0010 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 -0.2014 -4.0169 1.3537 28 1 -0.3274 -5.7794 1.1522 29 1 2.8717 -6.0243 3.2073 30 1 4.0395 -7.9010 2.1371 31 1 3.8094 -8.0941 -2.1207 32 1 2.2094 -6.2243 -2.1243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162032363.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:34 Heat of formation + Delta-G solvation = -95.819442 kcal Electronic energy + Delta-G solvation = -21293.381267 eV Core-core repulsion = 17746.888572 eV Total energy + Delta-G solvation = -3546.492695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.90373 -41.07313 -38.50793 -38.02683 -34.99466 -34.11183 -33.58923 -31.27083 -30.01157 -29.17504 -25.82727 -24.26279 -23.06576 -22.73791 -20.34429 -18.77537 -18.21217 -18.03648 -17.26876 -16.45765 -15.83660 -15.64036 -15.55960 -15.37226 -15.14023 -14.54647 -14.00262 -13.92525 -13.61281 -13.49078 -13.15408 -12.83730 -12.67244 -12.01494 -11.68964 -11.62009 -11.27406 -11.25852 -11.06783 -10.53467 -10.47955 -10.26902 -9.89114 -9.57472 -8.83322 -8.47507 -8.05571 -7.97764 -6.48730 -3.89853 1.10891 1.19204 2.65480 3.06783 3.15838 3.23296 3.27362 3.63127 3.71647 4.12950 4.22134 4.52360 4.69309 4.71283 4.83130 4.90806 5.04470 5.22159 5.26156 5.46850 5.51449 5.77105 5.84474 5.90210 5.92515 6.14292 6.27717 6.38435 6.72254 6.87174 7.20427 7.48802 7.95677 8.10351 8.49670 9.09083 9.42490 9.92387 10.68289 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.005145 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.272780 B = 5441.115599 C = 5972.035948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.552 5.552 10 C 0.437 3.563 11 O -0.582 6.582 12 C -0.062 4.062 13 H 0.112 0.888 14 C -0.133 4.133 15 C 0.530 3.470 16 O -0.521 6.521 17 N -0.659 5.659 18 C 0.206 3.794 19 C -0.194 4.194 20 C 0.123 3.877 21 F -0.141 7.141 22 C -0.177 4.177 23 C -0.044 4.044 24 C -0.089 4.089 25 H 0.274 0.726 26 H 0.393 0.607 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.410 0.590 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 -14.633 -1.428 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.187 5.187 10 C 0.222 3.778 11 O -0.466 6.466 12 C -0.084 4.084 13 H 0.130 0.870 14 C -0.173 4.173 15 C 0.318 3.682 16 O -0.396 6.396 17 N -0.302 5.302 18 C 0.109 3.891 19 C -0.216 4.216 20 C 0.103 3.897 21 F -0.119 7.119 22 C -0.197 4.197 23 C -0.063 4.063 24 C -0.092 4.092 25 H 0.084 0.916 26 H 0.227 0.773 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.248 0.752 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.814 -14.105 -0.937 14.160 hybrid contribution 0.349 0.646 0.314 0.799 sum 1.164 -13.459 -0.623 13.524 Atomic orbital electron populations 1.69587 1.05948 1.28531 1.49625 1.25273 0.95644 0.99792 0.96872 0.85910 0.78828 0.80335 0.79131 1.19820 1.20839 1.19842 1.19656 0.93363 0.82084 1.48142 0.87918 1.41838 1.09216 1.04487 1.63209 1.19520 0.88236 0.84233 0.85847 1.90553 1.13459 1.86820 1.55818 1.20190 0.95660 0.93375 0.99192 0.87041 1.21793 0.97873 1.06417 0.91235 1.20603 0.80606 0.76217 0.90728 1.90772 1.70715 1.46302 1.31798 1.43486 1.26132 1.49907 1.10687 1.17189 0.94623 0.91805 0.85517 1.20500 1.03780 0.99109 0.98161 1.17257 0.91099 0.87298 0.94017 1.91485 1.66605 1.56410 1.97412 1.20981 1.01304 1.00399 0.96973 1.20647 0.94932 0.93355 0.97338 1.19073 1.01093 0.97322 0.91710 0.91613 0.77344 0.86466 0.87388 0.75238 0.84477 0.84627 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.83 13.05 55.50 0.72 -23.11 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 3 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.45 5.09 -10.96 -0.06 -13.51 16 10 C 0.44 9.77 6.75 -10.99 -0.07 9.69 16 11 O -0.58 -15.19 15.61 5.55 0.09 -15.10 16 12 C -0.06 -1.00 2.76 -92.99 -0.26 -1.26 16 13 H 0.11 1.45 8.06 -51.93 -0.42 1.03 16 14 C -0.13 -1.99 5.49 -28.03 -0.15 -2.14 16 15 C 0.53 9.21 7.37 -11.24 -0.08 9.13 16 16 O -0.52 -10.75 17.91 5.55 0.10 -10.65 16 17 N -0.66 -10.01 5.35 -10.04 -0.05 -10.07 16 18 C 0.21 3.04 6.51 -83.76 -0.55 2.49 16 19 C -0.19 -2.50 9.90 -39.33 -0.39 -2.89 16 20 C 0.12 1.58 7.30 -39.44 -0.29 1.29 16 21 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 22 C -0.18 -2.13 10.02 -39.47 -0.40 -2.52 16 23 C -0.04 -0.57 9.68 -39.63 -0.38 -0.96 16 24 C -0.09 -1.34 4.15 -104.45 -0.43 -1.78 16 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.39 9.07 7.22 -40.82 -0.29 8.77 16 27 H 0.12 1.86 7.27 -51.93 -0.38 1.48 16 28 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.41 5.43 8.83 -40.82 -0.36 5.06 16 30 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -32.92 289.42 -5.72 -38.64 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -2.65 Total: 12.09 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.24 Total: 3.25 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.61 Total: -46.68 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: 0.19 Total: -25.75 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.92 -5.72 -38.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162032363.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.177 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds