Wall clock time and date at job start Tue Mar 31 2020 00:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47218 * 239.99449 * 3 2 1 5 5 H 1.48498 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46960 * 119.99806 * 3 2 1 7 7 C 1.38952 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00083 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99556 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99775 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99934 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99912 * 179.97438 * 10 9 7 13 13 H 1.09005 * 109.46392 * 60.01766 * 12 10 9 14 14 C 1.52910 * 109.45361 * 300.04858 * 12 10 9 15 15 C 1.50498 * 109.89730 * 288.59669 * 14 12 10 16 16 O 1.21287 * 119.62124 * 144.81211 * 15 14 12 17 17 N 1.34421 * 120.72688 * 324.56086 * 15 14 12 18 18 C 1.39821 * 120.56517 * 1.28385 * 17 15 14 19 19 C 1.38825 * 120.18256 * 198.30174 * 18 17 15 20 20 C 1.38324 * 119.87806 * 179.69811 * 19 18 17 21 21 F 1.35098 * 119.98021 * 180.02562 * 20 19 18 22 22 C 1.38538 * 120.03586 * 359.97438 * 20 19 18 23 23 C 1.38234 * 120.12012 * 0.02562 * 22 20 19 24 24 C 1.38103 * 120.06168 * 0.03381 * 23 22 20 25 25 H 0.97002 * 119.99989 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00067 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.40577 * 48.72810 * 14 12 10 28 28 H 1.09003 * 109.39996 * 168.47238 * 14 12 10 29 29 H 0.96994 * 119.66584 * 181.04880 * 17 15 14 30 30 H 1.08005 * 120.05839 * 359.67232 * 19 18 17 31 31 H 1.07998 * 119.93497 * 180.02562 * 22 20 19 32 32 H 1.08006 * 119.96850 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 1 0.6170 -4.9209 -0.8888 14 6 0.3644 -4.9427 1.2495 15 6 1.2232 -5.1436 2.4690 16 8 0.9034 -4.6276 3.5190 17 7 2.3378 -5.8925 2.4083 18 6 2.7360 -6.4784 1.2028 19 6 3.6383 -7.5334 1.2041 20 6 4.0231 -8.1125 0.0083 21 9 4.9008 -9.1396 0.0072 22 6 3.5082 -7.6405 -1.1881 23 6 2.6096 -6.5901 -1.1902 24 6 2.2233 -6.0078 0.0010 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 -0.2014 -4.0169 1.3537 28 1 -0.3274 -5.7794 1.1522 29 1 2.8717 -6.0243 3.2073 30 1 4.0395 -7.9010 2.1371 31 1 3.8094 -8.0941 -2.1207 32 1 2.2094 -6.2243 -2.1243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162032363.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:31 Heat of formation + Delta-G solvation = -119.248915 kcal Electronic energy + Delta-G solvation = -21294.397245 eV Core-core repulsion = 17746.888572 eV Total energy + Delta-G solvation = -3547.508673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.90039 -42.32889 -39.98969 -39.50872 -36.21690 -36.00716 -34.97197 -33.17625 -31.09745 -30.30506 -27.55169 -25.79334 -24.16613 -23.87369 -21.88229 -20.26086 -19.85911 -19.31850 -18.56142 -17.86324 -17.11235 -16.88763 -16.80467 -16.57209 -16.37565 -16.31639 -15.68900 -15.36733 -14.94861 -14.68864 -14.36884 -14.27749 -13.81532 -13.50403 -13.39071 -13.04534 -12.88220 -12.56759 -12.35210 -12.24966 -12.12393 -11.68406 -11.52207 -11.24122 -10.38503 -10.02816 -9.77697 -9.11898 -8.48006 -5.96558 0.01415 0.16654 1.37481 1.39367 1.40831 1.50929 1.89974 1.99222 2.27271 2.55125 3.11207 3.17001 3.27321 3.42369 3.53469 3.67007 3.81276 4.07959 4.19129 4.24661 4.43265 4.50881 4.64401 4.81025 4.87455 4.98594 5.15655 5.33200 5.39889 5.61745 5.78605 5.96341 6.03412 6.55884 6.83941 7.10181 7.52532 8.07009 8.68484 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.005145 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.272780 B = 5441.115599 C = 5972.035948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.988 3.012 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.278 1.278 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.564 5.564 10 C 0.438 3.562 11 O -0.622 6.622 12 C -0.049 4.049 13 H 0.150 0.850 14 C -0.129 4.129 15 C 0.520 3.480 16 O -0.567 6.567 17 N -0.654 5.654 18 C 0.186 3.814 19 C -0.191 4.191 20 C 0.118 3.882 21 F -0.139 7.139 22 C -0.168 4.168 23 C -0.045 4.045 24 C -0.110 4.110 25 H 0.279 0.721 26 H 0.397 0.603 27 H 0.105 0.895 28 H 0.156 0.844 29 H 0.415 0.585 30 H 0.156 0.844 31 H 0.164 0.836 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.338 -15.884 -2.660 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.812 3.188 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.203 1.203 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.201 5.201 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.071 4.071 13 H 0.168 0.832 14 C -0.169 4.169 15 C 0.310 3.690 16 O -0.446 6.446 17 N -0.297 5.297 18 C 0.089 3.911 19 C -0.212 4.212 20 C 0.098 3.902 21 F -0.118 7.118 22 C -0.187 4.187 23 C -0.063 4.063 24 C -0.113 4.113 25 H 0.088 0.912 26 H 0.232 0.768 27 H 0.123 0.877 28 H 0.174 0.826 29 H 0.254 0.746 30 H 0.174 0.826 31 H 0.182 0.818 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.687 -15.395 -2.196 15.566 hybrid contribution 0.492 0.890 0.663 1.214 sum 1.178 -14.505 -1.533 14.633 Atomic orbital electron populations 1.69641 1.06689 1.29440 1.49715 1.25975 0.96514 1.02249 0.96129 0.85061 0.77882 0.77012 0.78833 1.19367 1.19356 1.20323 1.19588 0.92622 0.84044 1.50252 0.90475 1.41893 1.09373 1.04561 1.64230 1.20648 0.88127 0.85749 0.82948 1.90519 1.15666 1.87867 1.56830 1.20132 0.95836 0.89773 1.01325 0.83230 1.21842 0.97841 1.07803 0.89417 1.21108 0.81166 0.75791 0.90935 1.90745 1.72002 1.48367 1.33439 1.43428 1.25594 1.49266 1.11400 1.17369 0.95748 0.92800 0.85138 1.20690 1.02848 0.98324 0.99321 1.17415 0.91108 0.87329 0.94350 1.91495 1.66540 1.56310 1.97415 1.21312 1.00010 0.99543 0.97852 1.20947 0.94703 0.93204 0.97446 1.19186 1.01836 0.97566 0.92734 0.91191 0.76803 0.87655 0.82647 0.74614 0.82623 0.81833 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.61 13.05 21.66 0.28 -48.33 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.34 -18.77 9.68 84.04 0.81 -17.96 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.56 -27.88 5.09 -306.99 -1.56 -29.44 16 10 C 0.44 19.58 6.75 87.66 0.59 20.17 16 11 O -0.62 -32.87 15.61 -3.04 -0.05 -32.92 16 12 C -0.05 -1.49 2.76 -12.33 -0.03 -1.53 16 13 H 0.15 3.38 8.06 -2.38 -0.02 3.36 16 14 C -0.13 -3.67 5.49 29.75 0.16 -3.51 16 15 C 0.52 18.02 7.37 87.65 0.65 18.67 16 16 O -0.57 -23.94 17.91 -3.05 -0.05 -24.00 16 17 N -0.65 -19.59 5.35 -304.27 -1.63 -21.22 16 18 C 0.19 5.20 6.51 38.16 0.25 5.45 16 19 C -0.19 -4.53 9.90 22.43 0.22 -4.31 16 20 C 0.12 2.70 7.30 22.36 0.16 2.86 16 21 F -0.14 -3.15 17.27 44.97 0.78 -2.38 16 22 C -0.17 -3.47 10.02 22.34 0.22 -3.24 16 23 C -0.04 -1.02 9.68 22.24 0.22 -0.80 16 24 C -0.11 -3.10 4.15 -19.75 -0.08 -3.18 16 25 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.40 18.52 7.22 -92.71 -0.67 17.85 16 27 H 0.11 3.29 7.27 -2.39 -0.02 3.28 16 28 H 0.16 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.42 11.01 8.83 -92.71 -0.82 10.19 16 30 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -72.70 289.42 3.15 -69.56 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.28 Total: 31.18 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 3.64 Total: 12.66 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -2.91 Total: -98.98 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -0.10 Total: -56.92 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.78 Total: -2.38 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -72.70 3.15 -69.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162032363.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.692 kcal (2) G-P(sol) polarization free energy of solvation -72.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds