Wall clock time and date at job start Tue Mar 31 2020 01:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32767 * 123.45937 * 2 1 4 4 S 1.75502 * 110.57626 * 179.73322 * 3 2 1 5 5 C 1.70446 * 92.44386 * 0.02562 * 4 3 2 6 6 C 1.36007 * 110.81833 * 359.97438 * 5 4 3 7 7 C 1.47196 * 123.46314 * 180.02562 * 6 5 4 8 8 O 1.21629 * 120.00415 * 234.76518 * 7 6 5 9 9 N 1.34775 * 119.99322 * 54.76616 * 7 6 5 10 10 C 1.46501 * 119.99917 * 185.51881 * 9 7 6 11 11 C 1.50707 * 109.47067 * 90.00025 * 10 9 7 12 12 H 1.07995 * 119.99650 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00165 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00113 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00039 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47169 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47327 * 120.00106 * 15 13 11 18 18 H 1.48501 * 109.47215 * 239.99781 * 15 13 11 19 19 C 1.46503 * 120.00612 * 5.52176 * 9 7 6 20 20 C 1.52997 * 109.46957 * 94.92626 * 19 9 7 21 21 C 1.47206 * 109.47030 * 180.02562 * 20 19 9 22 22 N 5.94015 * 110.68091 * 109.54276 * 2 1 3 23 23 H 1.08994 * 109.47495 * 90.01807 * 1 2 3 24 24 H 1.09000 * 109.47180 * 210.02563 * 1 2 3 25 25 H 1.09006 * 109.46995 * 330.02108 * 1 2 3 26 26 H 1.08000 * 124.71474 * 359.76342 * 3 2 1 27 27 H 1.08004 * 124.59082 * 179.97438 * 5 4 3 28 28 H 1.08991 * 109.47469 * 209.99991 * 10 9 7 29 29 H 1.09002 * 109.47185 * 330.00353 * 10 9 7 30 30 H 0.96999 * 120.00172 * 180.02562 * 14 13 11 31 31 H 1.08995 * 109.47461 * 214.93300 * 19 9 7 32 32 H 1.09001 * 109.46789 * 334.92976 * 19 9 7 33 33 H 1.08999 * 109.47567 * 300.00075 * 20 19 9 34 34 H 1.09001 * 109.47085 * 60.00532 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2391 1.1076 0.0000 4 16 3.9499 0.7163 0.0077 5 6 3.6410 -0.9599 0.0100 6 6 2.3032 -1.2049 0.0058 7 6 1.7261 -2.5590 0.0070 8 8 0.9317 -2.8824 -0.8554 9 7 2.0780 -3.4405 0.9639 10 6 1.5991 -4.8234 0.8978 11 6 2.5831 -5.6591 0.1200 12 1 3.4759 -5.2054 -0.2841 13 6 2.3434 -7.0026 -0.0756 14 7 1.2558 -7.5550 0.4162 15 14 3.5633 -8.0385 -1.0390 16 1 4.6953 -7.1856 -1.4824 17 1 4.0756 -9.1319 -0.1745 18 1 2.8885 -8.6214 -2.2265 19 6 2.9392 -3.0158 2.0704 20 6 2.0730 -2.6167 3.2667 21 6 2.9384 -2.1894 4.3782 22 7 3.6049 -1.8590 5.2372 23 1 -0.3634 -0.0003 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 1.8375 2.1102 -0.0037 27 1 4.4043 -1.7240 0.0143 28 1 1.5014 -5.2228 1.9072 29 1 0.6290 -4.8487 0.4015 30 1 1.0874 -8.5004 0.2789 31 1 3.5963 -3.8373 2.3554 32 1 3.5401 -2.1623 1.7561 33 1 1.4160 -1.7951 2.9817 34 1 1.4722 -3.4702 3.5810 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176128352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:29 Heat of formation + Delta-G solvation = 20.002407 kcal Electronic energy + Delta-G solvation = -19104.151744 eV Core-core repulsion = 16128.894637 eV Total energy + Delta-G solvation = -2975.257107 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70680 -37.12476 -36.70852 -35.22217 -32.89994 -31.14372 -30.79990 -28.05272 -26.98791 -24.54766 -23.75921 -22.44434 -19.90674 -18.12181 -17.47669 -17.41794 -16.44549 -16.31209 -15.68352 -14.74467 -14.49560 -14.10023 -13.95810 -13.82919 -13.50882 -13.11488 -12.77995 -12.61291 -12.39153 -12.22727 -12.13077 -12.01675 -11.72804 -11.60939 -11.29664 -10.97647 -10.92355 -10.82550 -10.66071 -10.22501 -9.72185 -9.18276 -8.77082 -8.50342 -8.24507 -7.84801 -6.11699 -4.16659 0.96358 1.62282 1.96526 2.30512 2.76649 2.85956 3.26190 3.34353 3.37202 3.45547 3.72547 4.23717 4.39886 4.78987 5.01554 5.10286 5.21624 5.22489 5.27811 5.41373 5.51460 5.53896 5.75264 5.85202 5.89865 5.99724 6.10039 6.30223 6.46770 6.93064 7.33191 7.40485 7.61879 7.84474 8.13711 8.21745 8.78542 8.94012 9.49132 10.96395 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.005872 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.701904 B = 4767.180825 C = 5445.637538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.060 4.060 3 C -0.241 4.241 4 S 0.154 5.846 5 C -0.216 4.216 6 C -0.133 4.133 7 C 0.572 3.428 8 O -0.523 6.523 9 N -0.589 5.589 10 C 0.244 3.756 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.110 3.890 20 C -0.048 4.048 21 C 0.219 3.781 22 N -0.447 5.447 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.165 0.835 27 H 0.172 0.828 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 15.724 1.979 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 C -0.376 4.376 4 S 0.421 5.579 5 C -0.353 4.353 6 C -0.151 4.151 7 C 0.356 3.644 8 O -0.400 6.400 9 N -0.320 5.320 10 C 0.125 3.875 11 C -0.569 4.569 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.016 4.016 20 C -0.090 4.090 21 C -0.099 4.099 22 N -0.124 5.124 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.182 0.818 27 H 0.189 0.811 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.534 16.709 2.816 17.309 hybrid contribution -0.752 -1.788 -0.873 2.127 sum 2.783 14.921 1.943 15.303 Atomic orbital electron populations 1.20478 0.89013 1.02590 1.03068 1.19853 0.97188 0.90107 1.00098 1.25192 0.96324 1.02301 1.13743 1.82901 1.05904 0.97788 1.71292 1.25533 0.99663 1.01878 1.08273 1.20462 0.92384 0.95123 1.07115 1.17545 0.81566 0.83026 0.82248 1.90794 1.33919 1.78369 1.36918 1.48120 1.49040 1.12694 1.22149 1.19394 0.96492 0.73686 0.97897 1.21449 1.07077 0.93628 1.34762 0.92339 1.24910 0.95551 0.97782 0.95668 1.69926 1.25404 1.12486 1.45279 0.86465 0.81125 0.80131 0.79844 1.19813 1.20926 1.20836 1.21481 0.92660 1.01763 0.85733 1.19836 0.96217 1.03751 0.89156 1.29110 0.93845 0.92844 0.94094 1.81204 1.09983 1.09893 1.11332 0.90536 0.90972 0.91599 0.81769 0.81101 0.94529 0.93290 0.92668 0.89026 0.89968 0.87585 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.81 36.01 0.35 -0.74 16 2 C -0.06 -0.79 6.01 -104.06 -0.63 -1.42 16 3 C -0.24 -2.60 10.91 28.86 0.31 -2.29 16 4 S 0.15 1.62 23.02 -107.50 -2.48 -0.85 16 5 C -0.22 -2.87 8.56 29.93 0.26 -2.61 16 6 C -0.13 -2.04 4.97 -104.63 -0.52 -2.56 16 7 C 0.57 11.10 6.65 -12.62 -0.08 11.02 16 8 O -0.52 -12.42 16.47 5.25 0.09 -12.33 16 9 N -0.59 -11.09 2.46 -176.41 -0.43 -11.52 16 10 C 0.24 5.77 5.23 -5.19 -0.03 5.74 16 11 C -0.53 -14.09 9.39 -34.44 -0.32 -14.41 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 15 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.11 1.57 5.27 -4.04 -0.02 1.55 16 20 C -0.05 -0.56 6.02 -29.52 -0.18 -0.74 16 21 C 0.22 2.84 15.43 -20.75 -0.32 2.52 16 22 N -0.45 -6.84 18.54 42.17 0.78 -6.06 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 25 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 26 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 27 H 0.17 2.17 7.70 -52.48 -0.40 1.76 16 28 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 31 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 32 H 0.08 1.06 4.55 -51.93 -0.24 0.82 16 33 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -31.92 318.55 -6.72 -38.64 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.92 Total: -1.89 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.27 Total: -2.31 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 1.08 Total: -42.15 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.48 Total: -0.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.92 -6.72 -38.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176128352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.638 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds