Wall clock time and date at job start Tue Mar 31 2020 00:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42108 * 109.46797 * 63.60985 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.35099 * 125.68946 * 269.72213 * 14 13 11 16 16 N 1.36837 * 107.17612 * 179.89772 * 15 14 13 17 17 C 1.36491 * 132.56615 * 180.09788 * 16 15 14 18 18 C 1.34952 * 120.61000 * 180.33143 * 17 16 15 19 19 C 1.40466 * 120.29839 * 359.95570 * 18 17 16 20 20 C 1.36026 * 119.69587 * 0.02562 * 19 18 17 21 21 C 1.37074 * 107.00408 * 0.35604 * 16 15 14 22 22 N 1.32561 * 108.03516 * 359.77826 * 21 16 15 23 23 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 29 29 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 30 30 H 1.07995 * 126.40975 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.69568 * 0.32695 * 17 16 15 32 32 H 1.07998 * 119.84522 * 179.97438 * 18 17 16 33 33 H 1.08006 * 120.15119 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.33335 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 16 5.8355 -2.6366 -0.0014 12 8 6.3101 -2.0406 1.1982 13 6 6.2436 -4.4040 -0.0003 14 6 7.7410 -4.5739 -0.0020 15 6 8.5222 -4.6691 -1.1001 16 7 9.8125 -4.8106 -0.6671 17 6 10.9987 -4.9463 -1.3285 18 6 12.1551 -5.0783 -0.6456 19 6 12.1527 -5.0767 0.7591 20 6 10.9775 -4.9418 1.4308 21 6 9.7783 -4.8054 0.7032 22 7 8.5161 -4.6612 1.0817 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.6796 0.8894 25 1 3.8746 -0.6807 -0.8905 26 1 3.6585 -3.1502 0.8903 27 1 3.6578 -3.1505 -0.8897 28 1 5.8253 -4.8730 0.8904 29 1 5.8239 -4.8744 -0.8896 30 1 8.1905 -4.6372 -2.1274 31 1 11.0119 -4.9482 -2.4084 32 1 13.0866 -5.1853 -1.1815 33 1 13.0795 -5.1829 1.3033 34 1 10.9638 -4.9388 2.5107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190817702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:40 Heat of formation + Delta-G solvation = 50.241725 kcal Electronic energy + Delta-G solvation = -18046.638529 eV Core-core repulsion = 15072.692698 eV Total energy + Delta-G solvation = -2973.945831 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.95254 -37.72776 -35.14204 -33.86695 -33.65857 -31.87284 -31.20511 -29.40405 -27.57328 -25.54801 -23.49990 -22.89646 -21.25998 -20.41055 -18.01084 -17.23005 -17.04160 -16.75610 -16.10021 -15.95540 -14.93779 -14.75375 -14.48626 -14.29615 -14.03382 -14.00491 -13.10625 -12.92908 -12.62063 -12.55968 -12.05839 -11.98192 -11.73143 -11.42701 -11.26236 -11.01594 -10.59678 -10.23299 -10.14789 -9.91435 -9.59954 -9.29725 -8.67653 -8.55800 -8.05533 -7.70022 -6.06208 -4.05362 0.48326 1.03618 1.82184 2.39104 2.80874 3.13104 3.31031 3.37501 3.39709 3.46600 3.97497 4.11889 4.28786 4.45031 4.45239 4.56117 4.79401 5.03147 5.09448 5.18880 5.27154 5.53446 5.55578 5.73150 5.78820 5.88798 5.90305 6.01687 6.22754 6.47201 6.64523 6.87222 7.09516 7.24231 7.71908 7.77785 8.50488 8.97142 9.55108 11.06809 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.044765 B = 0.003262 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.341420 B = 8581.319576 C = 8716.705558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.004 3.996 10 C -0.412 4.412 11 S 1.223 4.777 12 O -0.838 6.838 13 C -0.378 4.378 14 C 0.092 3.908 15 C -0.095 4.095 16 N -0.363 5.363 17 C 0.058 3.942 18 C -0.147 4.147 19 C -0.107 4.107 20 C -0.076 4.076 21 C 0.221 3.779 22 N -0.481 5.481 23 H 0.264 0.736 24 H 0.022 0.978 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.191 0.809 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.587 -11.914 -7.671 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.556 4.556 8 H 0.092 0.908 9 C -0.035 4.035 10 C -0.551 4.551 11 S 1.423 4.577 12 O -0.833 6.833 13 C -0.512 4.512 14 C -0.042 4.042 15 C -0.227 4.227 16 N -0.035 5.035 17 C -0.065 4.065 18 C -0.169 4.169 19 C -0.131 4.131 20 C -0.097 4.097 21 C -0.022 4.022 22 N -0.202 5.202 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.148 0.852 30 H 0.208 0.792 31 H 0.181 0.819 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 25.734 -11.012 -6.888 28.826 hybrid contribution -0.366 -0.277 0.951 1.056 sum 25.368 -11.288 -5.936 28.394 Atomic orbital electron populations 1.69902 1.06273 1.27013 1.50848 1.25013 0.94771 0.99180 0.94420 0.86861 0.80736 0.83628 0.78788 1.19825 1.21156 1.18707 1.21040 0.88757 0.94606 1.51233 0.90829 1.19240 0.98116 0.89090 0.97076 1.27479 1.14827 1.05952 1.06872 1.70456 0.89770 0.84471 1.13023 1.93133 1.74541 1.64999 1.50604 1.26255 0.92733 1.23896 1.08357 1.19901 0.94511 1.01498 0.88259 1.22441 0.80867 1.18290 1.01141 1.42833 1.06526 1.45269 1.08881 1.21631 0.83342 1.02600 0.98890 1.20791 0.97363 1.03915 0.94782 1.21012 0.98130 0.99914 0.94014 1.20312 0.88062 1.00522 1.00753 1.21001 0.94662 1.06088 0.80482 1.70711 0.98514 1.21526 1.29426 0.92619 0.95953 0.95903 0.90218 0.87035 0.88047 0.85158 0.79167 0.81882 0.83289 0.84111 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C 0.00 0.09 4.05 -27.88 -0.11 -0.03 16 10 C -0.41 -7.83 5.86 37.16 0.22 -7.62 16 11 S 1.22 19.66 13.14 -107.50 -1.41 18.25 16 12 O -0.84 -19.37 18.14 -35.23 -0.64 -20.01 16 13 C -0.38 -5.08 6.45 36.01 0.23 -4.85 16 14 C 0.09 1.34 6.32 -82.97 -0.52 0.82 16 15 C -0.10 -1.05 11.66 -16.43 -0.19 -1.24 16 16 N -0.36 -4.06 2.95 -62.66 -0.18 -4.25 16 17 C 0.06 0.41 10.95 -16.65 -0.18 0.23 16 18 C -0.15 -0.87 9.99 -39.91 -0.40 -1.27 16 19 C -0.11 -0.75 10.07 -39.54 -0.40 -1.15 16 20 C -0.08 -0.79 10.11 -39.36 -0.40 -1.19 16 21 C 0.22 3.08 7.81 -156.05 -1.22 1.86 16 22 N -0.48 -8.30 11.32 -9.01 -0.10 -8.41 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.08 1.62 8.14 -51.92 -0.42 1.20 16 27 H 0.11 1.78 8.14 -51.92 -0.42 1.36 16 28 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 29 H 0.13 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.19 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 33 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 34 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -41.45 310.03 -9.12 -50.57 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.16 Total: -3.15 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: -3.40 Total: -27.76 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.49 Total: -39.87 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.64 Total: -20.01 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 16 Polarization: 19.66 SS G_CDS: -1.41 Total: 18.25 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -41.45 -9.12 -50.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190817702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.811 kcal (2) G-P(sol) polarization free energy of solvation -41.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds