Wall clock time and date at job start Tue Mar 31 2020 00:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47004 * 179.97438 * 10 9 7 12 12 O 1.42108 * 109.46797 * 63.60985 * 11 10 9 13 13 C 1.81393 * 103.00232 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47513 * 179.97438 * 13 11 10 15 15 C 1.35099 * 125.68946 * 269.72213 * 14 13 11 16 16 N 1.36837 * 107.17612 * 179.89772 * 15 14 13 17 17 C 1.36491 * 132.56615 * 180.09788 * 16 15 14 18 18 C 1.34952 * 120.61000 * 180.33143 * 17 16 15 19 19 C 1.40466 * 120.29839 * 359.95570 * 18 17 16 20 20 C 1.36026 * 119.69587 * 0.02562 * 19 18 17 21 21 C 1.37074 * 107.00408 * 0.35604 * 16 15 14 22 22 N 1.32561 * 108.03516 * 359.77826 * 21 16 15 23 23 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09001 * 109.47259 * 300.00509 * 13 11 10 29 29 H 1.09010 * 109.47052 * 60.00011 * 13 11 10 30 30 H 1.07995 * 126.40975 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.69568 * 0.32695 * 17 16 15 32 32 H 1.07998 * 119.84522 * 179.97438 * 18 17 16 33 33 H 1.08006 * 120.15119 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.33335 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 16 5.8355 -2.6366 -0.0014 12 8 6.3101 -2.0406 1.1982 13 6 6.2436 -4.4040 -0.0003 14 6 7.7410 -4.5739 -0.0020 15 6 8.5222 -4.6691 -1.1001 16 7 9.8125 -4.8106 -0.6671 17 6 10.9987 -4.9463 -1.3285 18 6 12.1551 -5.0783 -0.6456 19 6 12.1527 -5.0767 0.7591 20 6 10.9775 -4.9418 1.4308 21 6 9.7783 -4.8054 0.7032 22 7 8.5161 -4.6612 1.0817 23 1 -0.4850 0.8401 0.0004 24 1 3.8753 -0.6796 0.8894 25 1 3.8746 -0.6807 -0.8905 26 1 3.6585 -3.1502 0.8903 27 1 3.6578 -3.1505 -0.8897 28 1 5.8253 -4.8730 0.8904 29 1 5.8239 -4.8744 -0.8896 30 1 8.1905 -4.6372 -2.1274 31 1 11.0119 -4.9482 -2.4084 32 1 13.0866 -5.1853 -1.1815 33 1 13.0795 -5.1829 1.3033 34 1 10.9638 -4.9388 2.5107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190817702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:40 Heat of formation + Delta-G solvation = 19.404615 kcal Electronic energy + Delta-G solvation = -18047.975727 eV Core-core repulsion = 15072.692698 eV Total energy + Delta-G solvation = -2975.283029 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.74340 -38.41699 -36.75878 -35.70708 -34.60983 -33.24890 -32.74760 -30.16007 -28.47567 -27.47574 -24.18174 -23.64332 -22.90248 -21.60314 -19.20540 -18.74057 -18.25002 -17.70268 -17.03940 -16.67436 -16.42607 -15.99056 -15.79242 -15.54794 -15.40527 -15.00720 -14.68956 -14.36823 -14.05187 -13.58495 -13.29605 -12.98532 -12.90925 -12.67724 -12.58041 -12.39197 -12.06719 -12.00110 -11.77825 -11.55465 -11.11825 -10.97417 -10.79043 -9.70469 -9.10836 -8.78532 -8.32579 -6.37278 -0.16113 0.31623 0.59897 1.32838 1.37323 1.49273 1.70220 1.76756 2.02809 2.34146 2.60678 2.89773 3.02204 3.21421 3.49486 3.86553 4.01095 4.20039 4.22732 4.24625 4.31661 4.40454 4.54595 4.73926 4.82199 4.84760 4.97655 5.16296 5.30072 5.31586 5.33347 5.57713 5.59880 5.63005 6.19054 6.24088 6.69417 6.92137 7.27209 8.83773 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.044765 B = 0.003262 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.341420 B = 8581.319576 C = 8716.705558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.940 3.060 4 H -0.243 1.243 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.001 4.001 10 C -0.418 4.418 11 S 1.291 4.709 12 O -0.915 6.915 13 C -0.361 4.361 14 C 0.042 3.958 15 C -0.074 4.074 16 N -0.368 5.368 17 C 0.051 3.949 18 C -0.143 4.143 19 C -0.079 4.079 20 C -0.124 4.124 21 C 0.197 3.803 22 N -0.555 5.555 23 H 0.268 0.732 24 H -0.004 1.004 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.146 0.854 28 H 0.077 0.923 29 H 0.184 0.816 30 H 0.241 0.759 31 H 0.207 0.793 32 H 0.194 0.806 33 H 0.174 0.826 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.376 -12.341 -11.033 33.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.762 3.238 4 H -0.166 1.166 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.057 0.943 9 C -0.039 4.039 10 C -0.556 4.556 11 S 1.493 4.507 12 O -0.911 6.911 13 C -0.498 4.498 14 C -0.090 4.090 15 C -0.207 4.207 16 N -0.039 5.039 17 C -0.070 4.070 18 C -0.163 4.163 19 C -0.102 4.102 20 C -0.145 4.145 21 C -0.047 4.047 22 N -0.277 5.277 23 H 0.077 0.923 24 H 0.014 0.986 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.096 0.904 29 H 0.201 0.799 30 H 0.258 0.742 31 H 0.224 0.776 32 H 0.211 0.789 33 H 0.192 0.808 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 29.503 -11.414 -10.264 33.257 hybrid contribution -1.331 -0.380 1.965 2.403 sum 28.172 -11.794 -8.299 31.649 Atomic orbital electron populations 1.70046 1.08109 1.28269 1.52380 1.25976 0.95653 1.03376 0.94049 0.85812 0.78985 0.78589 0.80380 1.16640 1.20917 1.18699 1.21406 0.91394 0.93404 1.50686 0.94341 1.19189 0.95097 0.92552 0.97067 1.27507 1.17853 1.02855 1.07401 1.69405 0.85633 0.85605 1.10055 1.92996 1.75392 1.69350 1.53337 1.26099 0.93370 1.20504 1.09861 1.20128 0.94763 1.04778 0.89298 1.23094 0.80326 1.15208 1.02053 1.43090 1.07836 1.44909 1.08087 1.22556 0.82146 1.01324 1.01008 1.21423 0.98824 1.01809 0.94249 1.21536 0.97903 0.95660 0.95131 1.20513 0.88615 1.04386 1.00959 1.21360 0.94493 1.06440 0.82371 1.70569 1.00730 1.24553 1.31886 0.92317 0.98556 0.92876 0.92679 0.83606 0.90423 0.79887 0.74243 0.77579 0.78851 0.80814 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 2 C 0.01 0.41 5.47 84.65 0.46 0.87 16 3 Si 0.94 45.40 27.47 68.60 1.88 47.28 16 4 H -0.24 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.26 -12.62 6.54 99.48 0.65 -11.97 16 7 C -0.53 -31.36 9.66 25.60 0.25 -31.11 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 9 C 0.00 -0.03 4.05 29.85 0.12 0.09 16 10 C -0.42 -15.97 5.86 71.98 0.42 -15.55 16 11 S 1.29 41.13 13.14 -56.49 -0.74 40.39 16 12 O -0.92 -43.98 18.14 -148.98 -2.70 -46.68 16 13 C -0.36 -9.40 6.45 71.24 0.46 -8.94 16 14 C 0.04 1.21 6.32 41.58 0.26 1.47 16 15 C -0.07 -1.42 11.66 83.19 0.97 -0.45 16 16 N -0.37 -7.30 2.95 -352.17 -1.04 -8.34 16 17 C 0.05 0.49 10.95 83.21 0.91 1.40 16 18 C -0.14 -0.98 9.99 22.06 0.22 -0.76 16 19 C -0.08 -0.87 10.07 22.30 0.22 -0.64 16 20 C -0.12 -2.59 10.11 22.41 0.23 -2.36 16 21 C 0.20 5.53 7.81 134.11 1.05 6.58 16 22 N -0.56 -19.99 11.32 -182.41 -2.06 -22.05 16 23 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 24 H 0.00 -0.21 7.20 -2.39 -0.02 -0.23 16 25 H 0.05 2.26 7.57 -2.39 -0.02 2.24 16 26 H 0.05 2.33 8.14 -2.39 -0.02 2.32 16 27 H 0.15 4.44 8.14 -2.39 -0.02 4.42 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.18 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.24 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.21 0.11 8.06 -2.91 -0.02 0.09 16 32 H 0.19 -0.36 8.06 -2.91 -0.02 -0.38 16 33 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -99.45 310.03 2.25 -97.19 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.04 Total: 1.64 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 5.57 Total: -49.40 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -2.80 Total: -90.42 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -2.70 Total: -46.68 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Atomic # 16 Polarization: 41.13 SS G_CDS: -0.74 Total: 40.39 kcal Total: -99.45 2.25 -97.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190817702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.597 kcal (2) G-P(sol) polarization free energy of solvation -99.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds